Wall clock time and date at job start Mon Mar 30 2020 03:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47370 * 2 1 4 4 C 1.53004 * 109.46927 * 240.00074 * 2 1 3 5 5 C 1.53004 * 109.47572 * 120.00203 * 2 1 3 6 6 C 1.52997 * 109.47070 * 67.93333 * 5 2 1 7 7 C 1.52995 * 109.62886 * 67.21610 * 6 5 2 8 8 O 1.43371 * 109.63332 * 306.82247 * 6 5 2 9 9 C 1.44193 * 107.29100 * 239.45286 * 8 6 5 10 10 C 1.54907 * 103.07420 * 338.56157 * 9 8 6 11 11 H 1.08998 * 110.98135 * 277.41415 * 10 9 8 12 12 C 1.50699 * 110.97672 * 153.67056 * 10 9 8 13 13 H 1.07999 * 119.99973 * 359.97438 * 12 10 9 14 14 C 1.37881 * 120.00399 * 180.02562 * 12 10 9 15 15 N 1.31522 * 119.99542 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00482 * 179.97438 * 14 12 10 17 17 H 1.48507 * 109.46974 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47278 * 119.99899 * 16 14 12 19 19 H 1.48497 * 109.47092 * 240.00129 * 16 14 12 20 20 O 1.43748 * 109.63254 * 187.45942 * 6 5 2 21 21 H 1.09002 * 109.46729 * 287.22194 * 1 2 3 22 22 H 1.08990 * 109.47421 * 47.22684 * 1 2 3 23 23 H 1.08999 * 109.46822 * 167.23198 * 1 2 3 24 24 H 1.08993 * 109.47530 * 180.02562 * 3 2 1 25 25 H 1.09009 * 109.46953 * 300.00240 * 3 2 1 26 26 H 1.08998 * 109.47102 * 59.99976 * 3 2 1 27 27 H 1.08996 * 109.47096 * 323.65309 * 4 2 1 28 28 H 1.09001 * 109.47024 * 83.64819 * 4 2 1 29 29 H 1.09004 * 109.47142 * 203.64670 * 4 2 1 30 30 H 1.09001 * 109.46790 * 307.93711 * 5 2 1 31 31 H 1.08994 * 109.46881 * 187.93516 * 5 2 1 32 32 H 1.09004 * 109.47526 * 273.59857 * 7 6 5 33 33 H 1.08993 * 109.47232 * 33.60001 * 7 6 5 34 34 H 1.09000 * 109.47225 * 153.60190 * 7 6 5 35 35 H 1.08999 * 110.69288 * 220.16672 * 9 8 6 36 36 H 1.08997 * 110.69089 * 96.96154 * 9 8 6 37 37 H 0.96997 * 119.99625 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0401 -0.7213 1.2492 6 6 1.6992 -2.2097 1.1536 7 6 2.5043 -2.8496 0.0208 8 8 0.2975 -2.3674 0.8971 9 6 -0.2535 -3.1366 1.9852 10 6 0.9868 -3.8606 2.5658 11 1 1.2170 -4.7597 1.9942 12 6 0.7874 -4.1876 4.0233 13 1 -0.1333 -3.9141 4.5170 14 6 1.7809 -4.8351 4.7268 15 7 2.9024 -5.1678 4.1256 16 14 1.5341 -5.2399 6.5336 17 1 0.1971 -4.7625 6.9697 18 1 1.6233 -6.7093 6.7284 19 1 2.5857 -4.5690 7.3393 20 8 2.0185 -2.8591 2.3957 21 1 -0.3633 0.3043 0.9816 22 1 -0.3634 0.6978 -0.7543 23 1 -0.3633 -1.0023 -0.2271 24 1 3.1300 1.4425 -0.0005 25 1 1.6767 1.9564 -0.8900 26 1 1.6767 1.9563 0.8900 27 1 1.3807 -1.5579 -1.4803 28 1 2.0539 -0.0269 -2.0894 29 1 3.0486 -1.0926 -1.0681 30 1 1.5656 -0.2960 2.1335 31 1 3.1208 -0.6000 1.3229 32 1 1.9669 -2.7292 -0.9199 33 1 3.4776 -2.3647 -0.0521 34 1 2.6417 -3.9110 0.2273 35 1 -0.9829 -3.8577 1.6165 36 1 -0.7016 -2.4811 2.7319 37 1 3.6011 -5.6237 4.6204 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258593027.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:53 Heat of formation + Delta-G solvation = -107.803593 kcal Electronic energy + Delta-G solvation = -17440.346420 eV Core-core repulsion = 14796.383837 eV Total energy + Delta-G solvation = -2643.962583 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.43668 -38.35640 -35.64045 -34.73338 -32.56042 -30.22985 -28.74775 -28.01456 -26.89526 -26.59994 -23.10888 -21.84633 -19.78943 -18.80154 -17.85212 -17.12916 -16.56486 -15.88639 -15.61646 -15.12491 -14.96567 -14.71811 -14.60384 -14.25252 -13.82185 -13.56539 -13.20887 -12.93986 -12.86808 -12.76503 -12.50278 -12.40165 -12.26698 -12.05053 -11.87449 -11.49169 -11.31778 -11.25227 -11.02503 -10.82687 -10.50977 -10.08785 -8.26655 -6.48987 1.38892 1.40324 1.53371 2.34976 2.79661 3.05708 3.50011 3.90268 3.98491 4.09416 4.22963 4.26132 4.34075 4.46628 4.59129 4.66058 4.72928 4.77222 4.88036 4.93753 4.97111 5.02159 5.04181 5.15911 5.18025 5.19377 5.37293 5.39609 5.46235 5.48486 5.62118 5.62476 5.80543 6.04382 6.56498 6.80297 7.27738 8.82789 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.045307 B = 0.007368 C = 0.007278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.856575 B = 3799.239245 C = 3846.318100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.058 4.058 3 C -0.135 4.135 4 C -0.153 4.153 5 C -0.103 4.103 6 C 0.235 3.765 7 C -0.176 4.176 8 O -0.378 6.378 9 C 0.030 3.970 10 C 0.179 3.821 11 H 0.009 0.991 12 C -0.555 4.555 13 H 0.073 0.927 14 C 0.023 3.977 15 N -0.903 5.903 16 Si 0.971 3.029 17 H -0.259 1.259 18 H -0.272 1.272 19 H -0.280 1.280 20 O -0.395 6.395 21 H 0.034 0.966 22 H 0.060 0.940 23 H 0.068 0.932 24 H 0.057 0.943 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.069 0.931 32 H 0.106 0.894 33 H 0.077 0.923 34 H 0.027 0.973 35 H 0.098 0.902 36 H 0.061 0.939 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.664 8.956 -8.561 12.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.058 4.058 3 C -0.192 4.192 4 C -0.210 4.210 5 C -0.141 4.141 6 C 0.158 3.842 7 C -0.233 4.233 8 O -0.300 6.300 9 C -0.046 4.046 10 C 0.124 3.876 11 H 0.027 0.973 12 C -0.592 4.592 13 H 0.091 0.909 14 C -0.180 4.180 15 N -0.540 5.540 16 Si 0.794 3.206 17 H -0.183 1.183 18 H -0.197 1.197 19 H -0.206 1.206 20 O -0.317 6.317 21 H 0.054 0.946 22 H 0.079 0.921 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.090 0.910 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.125 0.875 33 H 0.096 0.904 34 H 0.046 0.954 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.423 9.007 -8.591 12.681 hybrid contribution 0.207 -0.674 1.189 1.383 sum -2.216 8.333 -7.401 11.363 Atomic orbital electron populations 1.22018 0.94218 1.02454 1.00482 1.20392 0.96237 0.95550 0.93647 1.21862 1.01044 0.94181 1.02127 1.22587 1.01423 1.00368 0.96595 1.21966 1.00896 0.92331 0.98905 1.23470 0.81298 0.93549 0.85918 1.23159 1.00770 0.99460 0.99867 1.88784 1.21750 1.74098 1.45340 1.24150 0.97355 0.94179 0.88947 1.21263 0.82495 0.87297 0.96529 0.97285 1.21333 1.03170 1.39151 0.95514 0.90934 1.26034 0.94348 0.93941 1.03665 1.70167 1.06587 1.38844 1.38433 0.85329 0.78721 0.78120 0.78393 1.18279 1.19736 1.20601 1.89482 1.52215 1.51367 1.38594 0.94643 0.92101 0.91306 0.92401 0.90994 0.93162 0.91927 0.91557 0.91853 0.93239 0.91232 0.87548 0.90391 0.95370 0.88428 0.92098 0.92546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.76 7.61 71.98 0.55 -3.21 16 2 C -0.06 -1.59 0.79 -52.18 -0.04 -1.63 16 3 C -0.13 -2.99 8.31 71.98 0.60 -2.39 16 4 C -0.15 -3.74 6.95 71.98 0.50 -3.24 16 5 C -0.10 -3.66 4.09 30.59 0.13 -3.54 16 6 C 0.23 9.81 1.05 30.59 0.03 9.84 16 7 C -0.18 -6.50 7.57 71.98 0.54 -5.96 16 8 O -0.38 -15.22 7.04 -126.22 -0.89 -16.11 16 9 C 0.03 1.30 7.51 72.63 0.55 1.85 16 10 C 0.18 9.61 3.16 30.50 0.10 9.71 16 11 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 12 C -0.55 -31.47 8.83 25.60 0.23 -31.25 16 13 H 0.07 3.92 7.76 -2.91 -0.02 3.90 16 14 C 0.02 1.29 5.46 84.65 0.46 1.75 16 15 N -0.90 -54.59 13.21 21.45 0.28 -54.30 16 16 Si 0.97 43.70 29.54 68.60 2.03 45.72 16 17 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 20 O -0.39 -21.35 10.58 -126.22 -1.34 -22.69 16 21 H 0.03 1.05 8.00 -2.39 -0.02 1.03 16 22 H 0.06 1.39 8.08 -2.39 -0.02 1.37 16 23 H 0.07 2.15 5.24 -2.39 -0.01 2.14 16 24 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.07 1.32 8.12 -2.38 -0.02 1.30 16 26 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.06 1.64 5.40 -2.39 -0.01 1.62 16 28 H 0.07 1.31 7.91 -2.39 -0.02 1.29 16 29 H 0.06 1.56 5.45 -2.38 -0.01 1.55 16 30 H 0.05 1.90 8.03 -2.39 -0.02 1.88 16 31 H 0.07 2.41 7.95 -2.39 -0.02 2.39 16 32 H 0.11 3.33 4.74 -2.38 -0.01 3.32 16 33 H 0.08 2.60 6.35 -2.39 -0.02 2.59 16 34 H 0.03 1.18 8.04 -2.39 -0.02 1.16 16 35 H 0.10 3.77 8.14 -2.39 -0.02 3.75 16 36 H 0.06 2.63 8.01 -2.39 -0.02 2.61 16 37 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 Total: -1.00 -64.42 283.00 4.76 -59.66 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: 1.03 Total: 15.78 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: 3.64 Total: -28.07 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.28 Total: -54.30 kcal Atomic # 8 Polarization: -36.57 SS G_CDS: -2.22 Total: -38.79 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 2.03 Total: 45.72 kcal Total: -64.42 4.76 -59.66 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258593027.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.142 kcal (2) G-P(sol) polarization free energy of solvation -64.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds