Wall clock time and date at job start Mon Mar 30 2020 02:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21279 * 120.00393 * 2 1 4 4 N 1.34783 * 120.00000 * 180.27593 * 2 1 3 5 5 C 1.47423 * 125.64702 * 359.41810 * 4 2 1 6 6 C 1.55134 * 104.72183 * 155.81536 * 5 4 2 7 7 C 1.55160 * 101.48130 * 37.29542 * 6 5 4 8 8 H 1.08999 * 110.86850 * 82.76930 * 7 6 5 9 9 O 1.42898 * 110.71582 * 205.96709 * 7 6 5 10 10 C 1.47017 * 125.64676 * 179.72201 * 4 2 1 11 11 H 1.08998 * 109.89131 * 300.44489 * 10 4 2 12 12 N 1.46499 * 109.88302 * 61.61074 * 10 4 2 13 13 C 1.46503 * 120.00030 * 43.54053 * 12 10 4 14 14 C 1.36941 * 120.00259 * 223.54566 * 12 10 4 15 15 H 1.07996 * 119.99701 * 22.38905 * 14 12 10 16 16 C 1.38809 * 120.00186 * 202.39467 * 14 12 10 17 17 N 1.31623 * 119.99830 * 11.35523 * 16 14 12 18 18 Si 1.86795 * 120.00090 * 191.35213 * 16 14 12 19 19 H 1.48502 * 109.47164 * 60.00160 * 18 16 14 20 20 H 1.48502 * 109.47127 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47334 * 300.00089 * 18 16 14 22 22 H 1.09005 * 109.47457 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47369 * 119.99774 * 1 2 3 24 24 H 1.09002 * 109.47301 * 239.99561 * 1 2 3 25 25 H 1.09001 * 110.36575 * 274.74590 * 5 4 2 26 26 H 1.09003 * 110.36606 * 37.06809 * 5 4 2 27 27 H 1.09001 * 111.19146 * 279.19398 * 6 5 4 28 28 H 1.08998 * 110.93611 * 155.28676 * 6 5 4 29 29 H 0.96701 * 114.00616 * 293.52402 * 9 7 6 30 30 H 1.09004 * 109.46862 * 94.15708 * 13 12 10 31 31 H 1.09001 * 109.47353 * 214.15629 * 13 12 10 32 32 H 1.09002 * 109.47024 * 334.15870 * 13 12 10 33 33 H 0.97009 * 119.99508 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0056 5 6 1.5730 -2.5103 0.0001 6 6 2.6519 -3.4340 -0.6239 7 6 3.9547 -2.8231 -0.0433 8 1 4.1451 -3.1986 0.9621 9 8 5.0655 -3.0932 -0.9008 10 6 3.6438 -1.3119 -0.0121 11 1 4.0603 -0.8294 -0.8964 12 7 4.2092 -0.7119 1.1989 13 6 3.5731 -0.9457 2.4978 14 6 5.3322 0.0674 1.1169 15 1 5.5955 0.5384 0.1814 16 6 6.1322 0.2521 2.2362 17 7 5.9460 -0.4894 3.3077 18 14 7.4729 1.5526 2.2217 19 1 6.8650 2.8877 1.9912 20 1 8.1793 1.5499 3.5280 21 1 8.4399 1.2547 1.1349 22 1 -0.3634 1.0277 0.0005 23 1 -0.3634 -0.5138 -0.8900 24 1 -0.3634 -0.5139 0.8899 25 1 1.3485 -2.8208 1.0205 26 1 0.6683 -2.5199 -0.6079 27 1 2.6424 -3.3718 -1.7121 28 1 2.5218 -4.4641 -0.2922 29 1 5.3017 -4.0294 -0.9554 30 1 4.0531 -1.7913 2.9904 31 1 3.6777 -0.0561 3.1190 32 1 2.5153 -1.1636 2.3504 33 1 6.5049 -0.3601 4.0900 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259632098.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:24 Heat of formation + Delta-G solvation = -44.134936 kcal Electronic energy + Delta-G solvation = -17076.288258 eV Core-core repulsion = 14331.546211 eV Total energy + Delta-G solvation = -2744.742047 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.62577 -37.40933 -35.19138 -34.43704 -31.00190 -30.66274 -28.84905 -26.95570 -25.74502 -23.21784 -21.82847 -20.44448 -18.38354 -17.50660 -16.52234 -16.24808 -15.27573 -15.05343 -14.36705 -13.84115 -13.66115 -13.57913 -13.22707 -12.78874 -12.22406 -12.15903 -11.93583 -11.69765 -11.48145 -11.36094 -10.78381 -10.73782 -10.41670 -10.33818 -9.97940 -9.74359 -9.48076 -9.24723 -8.49658 -8.15163 -6.75097 -5.63925 -3.07892 3.20889 3.44514 3.51511 3.52320 3.57628 4.60151 4.64683 4.83350 4.91223 5.22828 5.35538 5.44900 5.54058 5.58035 5.60307 5.70827 5.76805 5.98122 6.02645 6.10792 6.28886 6.66090 6.79969 6.91352 7.44576 7.73398 7.92977 8.06087 8.13803 8.49230 8.80171 9.32796 9.91663 10.40143 11.42622 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.026659 B = 0.010709 C = 0.008834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.059669 B = 2614.043051 C = 3168.634189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.522 3.478 3 O -0.522 6.522 4 N -0.623 5.623 5 C 0.104 3.896 6 C -0.170 4.170 7 C 0.084 3.916 8 H 0.076 0.924 9 O -0.550 6.550 10 C 0.391 3.609 11 H 0.076 0.924 12 N -0.580 5.580 13 C 0.167 3.833 14 C -0.237 4.237 15 H 0.068 0.932 16 C 0.001 3.999 17 N -0.914 5.914 18 Si 0.909 3.091 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.283 1.283 22 H 0.086 0.914 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.369 0.631 30 H 0.028 0.972 31 H 0.044 0.956 32 H -0.006 1.006 33 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.548 -8.044 -6.074 14.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.309 3.691 3 O -0.397 6.397 4 N -0.363 5.363 5 C -0.020 4.020 6 C -0.209 4.209 7 C 0.020 3.980 8 H 0.094 0.906 9 O -0.353 6.353 10 C 0.199 3.801 11 H 0.094 0.906 12 N -0.301 5.301 13 C 0.022 3.978 14 C -0.367 4.367 15 H 0.086 0.914 16 C -0.196 4.196 17 N -0.560 5.560 18 Si 0.739 3.261 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.209 1.209 22 H 0.105 0.895 23 H 0.099 0.901 24 H 0.100 0.900 25 H 0.084 0.916 26 H 0.089 0.911 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.215 0.785 30 H 0.046 0.954 31 H 0.063 0.937 32 H 0.013 0.987 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -10.163 -6.675 -5.958 13.540 hybrid contribution 0.614 -0.158 0.288 0.696 sum -9.549 -6.833 -5.670 13.039 Atomic orbital electron populations 1.21902 0.92775 1.04691 1.03385 1.20299 0.89596 0.82683 0.76481 1.90773 1.70457 1.30356 1.48096 1.49265 1.08429 1.05013 1.73567 1.22175 0.96246 0.83205 1.00394 1.23563 0.96975 0.98874 1.01445 1.23472 0.83839 0.97636 0.93004 0.90642 1.86543 1.50663 1.29676 1.68410 1.20406 0.77483 0.90137 0.92074 0.90622 1.44168 1.28786 1.55875 1.01290 1.20699 0.90209 1.00450 0.86418 1.19109 0.99316 1.21071 0.97221 0.91438 1.24931 0.98277 0.99316 0.97093 1.70066 1.41374 1.39928 1.04603 0.86251 0.81464 0.81801 0.76559 1.21075 1.21732 1.20895 0.89508 0.90143 0.90015 0.91646 0.91079 0.90189 0.90579 0.78481 0.95407 0.93683 0.98726 0.93881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.14 9.32 36.00 0.34 -1.80 16 2 C 0.52 10.07 7.69 -10.99 -0.08 9.99 16 3 O -0.52 -13.00 17.25 5.56 0.10 -12.90 16 4 N -0.62 -11.54 2.01 -166.42 -0.33 -11.88 16 5 C 0.10 1.38 6.66 -2.41 -0.02 1.36 16 6 C -0.17 -2.19 6.82 -24.46 -0.17 -2.36 16 7 C 0.08 1.52 3.96 -24.90 -0.10 1.42 16 8 H 0.08 1.50 7.76 -51.93 -0.40 1.10 16 9 O -0.55 -9.93 13.39 -35.23 -0.47 -10.40 16 10 C 0.39 8.72 2.97 -126.38 -0.38 8.35 16 11 H 0.08 1.89 7.83 -51.93 -0.41 1.49 16 12 N -0.58 -15.52 2.63 -176.00 -0.46 -15.98 16 13 C 0.17 4.32 8.49 59.85 0.51 4.83 16 14 C -0.24 -7.09 9.65 -15.06 -0.15 -7.24 16 15 H 0.07 2.05 7.79 -52.49 -0.41 1.64 16 16 C 0.00 0.03 5.13 -17.43 -0.09 -0.06 16 17 N -0.91 -27.60 10.59 55.49 0.59 -27.02 16 18 Si 0.91 23.48 29.57 -169.99 -5.03 18.46 16 19 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 20 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 21 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 22 H 0.09 1.08 8.12 -51.93 -0.42 0.66 16 23 H 0.08 0.80 7.85 -51.93 -0.41 0.39 16 24 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.07 0.72 7.47 -51.93 -0.39 0.33 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.37 4.58 9.12 45.56 0.42 5.00 16 30 H 0.03 0.75 7.42 -51.93 -0.39 0.37 16 31 H 0.04 1.30 7.19 -51.93 -0.37 0.92 16 32 H -0.01 -0.13 6.90 -51.93 -0.36 -0.49 16 33 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 275.76 15.07 4.16 4.16 Total: -1.00 -36.07 275.76 -5.55 -41.62 By element: Atomic # 1 Polarization: 3.41 SS G_CDS: -3.96 Total: -0.55 kcal Atomic # 6 Polarization: 14.63 SS G_CDS: -0.13 Total: 14.49 kcal Atomic # 7 Polarization: -54.67 SS G_CDS: -0.21 Total: -54.88 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.38 Total: -23.30 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -5.03 Total: 18.46 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -36.07 -5.55 -41.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259632098.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.513 kcal (2) G-P(sol) polarization free energy of solvation -36.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds