Wall clock time and date at job start Mon Mar 30 2020 02:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 O 1.21279 * 120.00393 * 2 1 4 4 N 1.34783 * 120.00000 * 180.27593 * 2 1 3 5 5 C 1.47423 * 125.64702 * 359.41810 * 4 2 1 6 6 C 1.55134 * 104.72183 * 155.81536 * 5 4 2 7 7 C 1.55160 * 101.48130 * 37.29542 * 6 5 4 8 8 H 1.08999 * 110.86850 * 82.76930 * 7 6 5 9 9 O 1.42898 * 110.71582 * 205.96709 * 7 6 5 10 10 C 1.47017 * 125.64676 * 179.72201 * 4 2 1 11 11 H 1.08998 * 109.89131 * 300.44489 * 10 4 2 12 12 N 1.46499 * 109.88302 * 61.61074 * 10 4 2 13 13 C 1.46503 * 120.00030 * 43.54053 * 12 10 4 14 14 C 1.36941 * 120.00259 * 223.54566 * 12 10 4 15 15 H 1.07996 * 119.99701 * 22.38905 * 14 12 10 16 16 C 1.38809 * 120.00186 * 202.39467 * 14 12 10 17 17 N 1.31623 * 119.99830 * 11.35523 * 16 14 12 18 18 Si 1.86795 * 120.00090 * 191.35213 * 16 14 12 19 19 H 1.48502 * 109.47164 * 60.00160 * 18 16 14 20 20 H 1.48502 * 109.47127 * 179.97438 * 18 16 14 21 21 H 1.48492 * 109.47334 * 300.00089 * 18 16 14 22 22 H 1.09005 * 109.47457 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.47369 * 119.99774 * 1 2 3 24 24 H 1.09002 * 109.47301 * 239.99561 * 1 2 3 25 25 H 1.09001 * 110.36575 * 274.74590 * 5 4 2 26 26 H 1.09003 * 110.36606 * 37.06809 * 5 4 2 27 27 H 1.09001 * 111.19146 * 279.19398 * 6 5 4 28 28 H 1.08998 * 110.93611 * 155.28676 * 6 5 4 29 29 H 0.96701 * 114.00616 * 293.52402 * 9 7 6 30 30 H 1.09004 * 109.46862 * 94.15708 * 13 12 10 31 31 H 1.09001 * 109.47353 * 214.15629 * 13 12 10 32 32 H 1.09002 * 109.47024 * 334.15870 * 13 12 10 33 33 H 0.97009 * 119.99508 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0056 5 6 1.5730 -2.5103 0.0001 6 6 2.6519 -3.4340 -0.6239 7 6 3.9547 -2.8231 -0.0433 8 1 4.1451 -3.1986 0.9621 9 8 5.0655 -3.0932 -0.9008 10 6 3.6438 -1.3119 -0.0121 11 1 4.0603 -0.8294 -0.8964 12 7 4.2092 -0.7119 1.1989 13 6 3.5731 -0.9457 2.4978 14 6 5.3322 0.0674 1.1169 15 1 5.5955 0.5384 0.1814 16 6 6.1322 0.2521 2.2362 17 7 5.9460 -0.4894 3.3077 18 14 7.4729 1.5526 2.2217 19 1 6.8650 2.8877 1.9912 20 1 8.1793 1.5499 3.5280 21 1 8.4399 1.2547 1.1349 22 1 -0.3634 1.0277 0.0005 23 1 -0.3634 -0.5138 -0.8900 24 1 -0.3634 -0.5139 0.8899 25 1 1.3485 -2.8208 1.0205 26 1 0.6683 -2.5199 -0.6079 27 1 2.6424 -3.3718 -1.7121 28 1 2.5218 -4.4641 -0.2922 29 1 5.3017 -4.0294 -0.9554 30 1 4.0531 -1.7913 2.9904 31 1 3.6777 -0.0561 3.1190 32 1 2.5153 -1.1636 2.3504 33 1 6.5049 -0.3601 4.0900 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259632098.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:24 Heat of formation + Delta-G solvation = -73.006335 kcal Electronic energy + Delta-G solvation = -17077.540216 eV Core-core repulsion = 14331.546211 eV Total energy + Delta-G solvation = -2745.994004 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.12122 -38.94970 -36.88482 -36.19616 -33.02244 -32.05784 -30.13891 -28.58076 -27.86529 -24.81256 -23.47779 -21.88930 -19.93752 -19.28055 -18.24428 -17.89928 -16.85443 -16.64924 -16.17465 -15.49242 -15.21333 -14.95062 -14.78264 -14.47978 -13.98877 -13.41983 -13.23550 -13.16331 -12.89604 -12.81183 -12.65868 -12.64308 -12.50365 -12.13603 -12.03484 -11.65897 -10.87294 -10.83219 -10.66969 -9.70743 -8.87890 -7.89553 -5.35442 1.37819 1.42550 1.48842 1.75517 2.07054 2.48288 3.21668 3.43699 3.48950 3.67886 3.91548 4.03889 4.24573 4.38575 4.51945 4.61376 4.63576 4.71245 4.75329 4.91572 5.02201 5.07261 5.19542 5.27579 5.39289 5.55781 5.62065 6.24477 6.68812 6.99107 7.11618 7.34540 7.78030 8.20942 9.14486 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.026659 B = 0.010709 C = 0.008834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.059669 B = 2614.043051 C = 3168.634189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.506 3.494 3 O -0.596 6.596 4 N -0.624 5.624 5 C 0.098 3.902 6 C -0.147 4.147 7 C 0.089 3.911 8 H 0.057 0.943 9 O -0.574 6.574 10 C 0.382 3.618 11 H 0.032 0.968 12 N -0.599 5.599 13 C 0.192 3.808 14 C -0.255 4.255 15 H 0.047 0.953 16 C -0.048 4.048 17 N -0.934 5.934 18 Si 0.968 3.032 19 H -0.288 1.288 20 H -0.282 1.282 21 H -0.274 1.274 22 H 0.086 0.914 23 H 0.120 0.880 24 H 0.108 0.892 25 H 0.079 0.921 26 H 0.119 0.881 27 H 0.090 0.910 28 H 0.117 0.883 29 H 0.394 0.606 30 H 0.011 0.989 31 H 0.004 0.996 32 H 0.025 0.975 33 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.670 -10.019 -6.817 17.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.297 3.703 3 O -0.476 6.476 4 N -0.362 5.362 5 C -0.024 4.024 6 C -0.185 4.185 7 C 0.026 3.974 8 H 0.075 0.925 9 O -0.382 6.382 10 C 0.191 3.809 11 H 0.050 0.950 12 N -0.323 5.323 13 C 0.047 3.953 14 C -0.386 4.386 15 H 0.065 0.935 16 C -0.242 4.242 17 N -0.581 5.581 18 Si 0.796 3.204 19 H -0.215 1.215 20 H -0.207 1.207 21 H -0.200 1.200 22 H 0.105 0.895 23 H 0.138 0.862 24 H 0.127 0.873 25 H 0.097 0.903 26 H 0.137 0.863 27 H 0.109 0.891 28 H 0.136 0.864 29 H 0.244 0.756 30 H 0.030 0.970 31 H 0.023 0.977 32 H 0.043 0.957 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.336 -8.738 -6.737 16.550 hybrid contribution 1.241 0.430 0.424 1.380 sum -11.095 -8.308 -6.313 15.231 Atomic orbital electron populations 1.21886 0.86836 1.05849 1.06439 1.21664 0.92317 0.81673 0.74641 1.90740 1.72448 1.33020 1.51403 1.49266 1.06910 1.07411 1.72616 1.22625 0.97689 0.79734 1.02373 1.23492 0.92604 1.00575 1.01840 1.23119 0.86713 0.94626 0.92920 0.92499 1.86484 1.51252 1.32300 1.68154 1.20490 0.79492 0.92287 0.88631 0.94992 1.44265 1.28544 1.56745 1.02742 1.20321 0.91616 0.97709 0.85665 1.19210 1.00707 1.21946 0.96743 0.93530 1.25638 1.00508 1.01289 0.96810 1.70189 1.42146 1.40933 1.04801 0.85333 0.79071 0.78977 0.77010 1.21522 1.20730 1.19999 0.89542 0.86201 0.87332 0.90290 0.86298 0.89120 0.86425 0.75583 0.97031 0.97725 0.95658 0.94084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.28 9.32 71.23 0.66 -2.61 16 2 C 0.51 19.05 7.69 87.65 0.67 19.73 16 3 O -0.60 -30.74 17.25 -3.03 -0.05 -30.79 16 4 N -0.62 -22.17 2.01 -798.80 -1.61 -23.78 16 5 C 0.10 2.12 6.66 86.93 0.58 2.69 16 6 C -0.15 -3.14 6.82 32.07 0.22 -2.92 16 7 C 0.09 3.14 3.96 31.78 0.13 3.26 16 8 H 0.06 2.23 7.76 -2.39 -0.02 2.21 16 9 O -0.57 -20.46 13.39 -148.98 -1.99 -22.46 16 10 C 0.38 17.38 2.97 129.82 0.39 17.77 16 11 H 0.03 1.70 7.83 -2.39 -0.02 1.68 16 12 N -0.60 -33.31 2.63 -710.74 -1.87 -35.18 16 13 C 0.19 10.19 8.49 127.77 1.08 11.28 16 14 C -0.26 -16.01 9.65 84.03 0.81 -15.20 16 15 H 0.05 3.03 7.79 -2.91 -0.02 3.00 16 16 C -0.05 -2.92 5.13 84.86 0.44 -2.48 16 17 N -0.93 -58.07 10.59 21.65 0.23 -57.84 16 18 Si 0.97 49.73 29.57 68.60 2.03 51.76 16 19 H -0.29 -14.90 7.11 99.48 0.71 -14.19 16 20 H -0.28 -13.94 7.11 99.48 0.71 -13.23 16 21 H -0.27 -13.59 7.11 99.48 0.71 -12.89 16 22 H 0.09 1.92 8.12 -2.38 -0.02 1.90 16 23 H 0.12 1.69 7.85 -2.39 -0.02 1.67 16 24 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 26 H 0.12 1.56 7.47 -2.39 -0.02 1.54 16 27 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.39 9.14 9.12 -74.06 -0.68 8.47 16 30 H 0.01 0.64 7.42 -2.39 -0.02 0.62 16 31 H 0.00 0.24 7.19 -2.39 -0.02 0.22 16 32 H 0.03 1.14 6.90 -2.39 -0.02 1.13 16 33 H 0.25 14.99 8.31 -92.70 -0.77 14.21 16 Total: -1.00 -85.74 275.76 2.14 -83.60 By element: Atomic # 1 Polarization: 2.74 SS G_CDS: 0.43 Total: 3.17 kcal Atomic # 6 Polarization: 26.54 SS G_CDS: 4.98 Total: 31.52 kcal Atomic # 7 Polarization: -113.56 SS G_CDS: -3.25 Total: -116.80 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -2.05 Total: -53.24 kcal Atomic # 14 Polarization: 49.73 SS G_CDS: 2.03 Total: 51.76 kcal Total: -85.74 2.14 -83.60 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259632098.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.590 kcal (2) G-P(sol) polarization free energy of solvation -85.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds