Wall clock time and date at job start Mon Mar 30 2020 03:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34635 * 117.00563 * 2 1 4 4 O 1.21510 * 119.99385 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00353 * 180.02562 * 3 2 1 6 6 C 1.46928 * 120.63179 * 0.02562 * 5 3 2 7 7 C 1.53159 * 108.76987 * 233.59029 * 6 5 3 8 8 C 1.53046 * 109.32667 * 305.35456 * 7 6 5 9 9 C 1.53039 * 109.52798 * 61.37318 * 8 7 6 10 10 N 1.46903 * 109.49911 * 58.59165 * 9 8 7 11 11 C 1.50694 * 109.49817 * 178.65877 * 9 8 7 12 12 H 1.07995 * 120.00018 * 359.97438 * 11 9 8 13 13 C 1.37879 * 119.99969 * 180.02562 * 11 9 8 14 14 N 1.31520 * 120.00186 * 359.97438 * 13 11 9 15 15 Si 1.86795 * 120.00132 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47460 * 89.99886 * 15 13 11 17 17 H 1.48502 * 109.47453 * 209.99828 * 15 13 11 18 18 H 1.48497 * 109.46998 * 329.99754 * 15 13 11 19 19 C 1.46931 * 120.63029 * 179.97438 * 5 3 2 20 20 H 1.09006 * 109.46793 * 60.00189 * 1 2 3 21 21 H 1.09001 * 109.47164 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47258 * 300.00340 * 1 2 3 23 23 H 1.08999 * 109.58766 * 353.37877 * 6 5 3 24 24 H 1.08998 * 109.58326 * 113.79952 * 6 5 3 25 25 H 1.08996 * 109.48005 * 185.40991 * 7 6 5 26 26 H 1.08994 * 109.50349 * 65.31594 * 7 6 5 27 27 H 1.09002 * 109.46115 * 301.35771 * 8 7 6 28 28 H 1.09004 * 109.45806 * 181.38656 * 8 7 6 29 29 H 1.00893 * 111.00326 * 180.02562 * 10 9 8 30 30 H 1.00905 * 111.00013 * 303.95931 * 10 9 8 31 31 H 0.97000 * 120.00339 * 180.02562 * 14 13 11 32 32 H 1.08998 * 109.58425 * 6.63242 * 19 5 3 33 33 H 1.08999 * 109.58795 * 246.19692 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0633 1.1995 0.0000 4 8 1.4015 2.2186 -0.0005 5 7 3.4092 1.2700 -0.0005 6 6 4.2229 0.0467 -0.0017 7 6 5.2130 0.1123 1.1650 8 6 6.0242 1.4065 1.0687 9 6 5.0826 2.6089 1.1665 10 7 4.3472 2.5539 2.4370 11 6 5.8853 3.8827 1.1047 12 1 6.9599 3.8396 1.0060 13 6 5.2480 5.1033 1.1751 14 7 3.9394 5.1560 1.2958 15 14 6.2431 6.6824 1.0993 16 1 6.3789 7.1145 -0.3149 17 1 5.5507 7.7417 1.8762 18 1 7.5908 6.4463 1.6763 19 6 4.0906 2.5718 -0.0011 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 3.5760 -0.8226 0.1165 24 1 4.7699 -0.0274 -0.9415 25 1 5.8865 -0.7435 1.1187 26 1 4.6662 0.0950 2.1077 27 1 6.5513 1.4346 0.1151 28 1 6.7466 1.4437 1.8842 29 1 3.7180 3.3377 2.5249 30 1 3.8511 1.6801 2.5302 31 1 3.4909 6.0147 1.3450 32 1 3.3564 3.3686 0.1176 33 1 4.6269 2.7030 -0.9409 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259763726.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:24 Heat of formation + Delta-G solvation = -77.089977 kcal Electronic energy + Delta-G solvation = -17111.744235 eV Core-core repulsion = 14365.573150 eV Total energy + Delta-G solvation = -2746.171084 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.04800 -37.93526 -35.66671 -33.94623 -31.96644 -30.56988 -27.85016 -27.28005 -25.15722 -24.40571 -21.81297 -20.42299 -18.39248 -17.44566 -16.44553 -16.22692 -15.91104 -14.97757 -14.23939 -13.98339 -13.85904 -13.48257 -13.21642 -12.66936 -12.41370 -12.08926 -11.86068 -11.73977 -11.27091 -10.93296 -10.81904 -10.44064 -10.37812 -10.25381 -10.07575 -9.83641 -9.36337 -9.04177 -8.62001 -8.18164 -6.91045 -6.06643 -4.14680 2.75872 3.29844 3.37504 3.40505 3.43181 4.38346 4.48754 5.20213 5.33107 5.42050 5.45127 5.54502 5.63946 5.71464 6.03222 6.21466 6.30545 6.37426 6.45617 6.69128 6.73368 6.81956 7.07981 7.12924 7.17410 7.60402 7.91059 8.10181 8.20305 8.70628 8.91972 9.06670 9.24276 9.54407 10.98622 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.034116 B = 0.009535 C = 0.008032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.531765 B = 2935.760674 C = 3485.351701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 O -0.381 6.381 3 C 0.636 3.364 4 O -0.569 6.569 5 N -0.586 5.586 6 C 0.112 3.888 7 C -0.137 4.137 8 C -0.102 4.102 9 C 0.236 3.764 10 N -0.836 5.836 11 C -0.502 4.502 12 H 0.062 0.938 13 C 0.070 3.930 14 N -0.889 5.889 15 Si 0.900 3.100 16 H -0.282 1.282 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.093 3.907 20 H 0.057 0.943 21 H 0.094 0.906 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.357 0.643 30 H 0.292 0.708 31 H 0.266 0.734 32 H 0.125 0.875 33 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.455 -10.238 -2.569 10.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.296 6.296 3 C 0.389 3.611 4 O -0.458 6.458 5 N -0.326 5.326 6 C -0.012 4.012 7 C -0.175 4.175 8 C -0.140 4.140 9 C 0.143 3.857 10 N -0.368 5.368 11 C -0.541 4.541 12 H 0.081 0.919 13 C -0.133 4.133 14 N -0.528 5.528 15 Si 0.728 3.272 16 H -0.208 1.208 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.028 4.028 20 H 0.076 0.924 21 H 0.113 0.887 22 H 0.078 0.922 23 H 0.097 0.903 24 H 0.079 0.921 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.079 0.921 29 H 0.175 0.825 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.143 0.857 33 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.157 -9.719 -2.200 10.196 hybrid contribution -0.560 0.807 -0.718 1.216 sum -2.717 -8.913 -2.918 9.764 Atomic orbital electron populations 1.23037 0.75738 1.02518 1.02422 1.86202 1.23219 1.32339 1.87812 1.18261 0.83838 0.81674 0.77303 1.90996 1.64140 1.34584 1.56068 1.47522 1.01057 1.09753 1.74306 1.21651 0.93837 0.86799 0.98871 1.21971 0.98096 0.99164 0.98267 1.21580 0.98232 0.93558 1.00662 1.18660 0.89559 0.92763 0.84731 1.59414 1.34950 1.05903 1.36502 1.20960 0.93334 0.89326 1.50476 0.91941 1.25046 0.94997 0.99335 0.93919 1.69634 1.07440 1.25870 1.49816 0.86478 0.80155 0.82757 0.77858 1.20785 1.21228 1.19883 1.23286 0.97961 0.81146 1.00456 0.92372 0.88713 0.92196 0.90342 0.92058 0.92000 0.91444 0.93024 0.92101 0.82515 0.89751 0.92398 0.85675 0.93368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.76 10.56 101.05 1.07 1.83 16 2 O -0.38 -6.55 9.20 -40.31 -0.37 -6.93 16 3 C 0.64 13.42 8.43 54.05 0.46 13.88 16 4 O -0.57 -13.99 15.54 -19.28 -0.30 -14.29 16 5 N -0.59 -12.02 2.55 -178.54 -0.46 -12.47 16 6 C 0.11 1.84 6.45 -3.73 -0.02 1.82 16 7 C -0.14 -2.26 5.76 -26.63 -0.15 -2.41 16 8 C -0.10 -2.04 4.83 -26.69 -0.13 -2.17 16 9 C 0.24 5.60 0.64 -132.61 -0.09 5.52 16 10 N -0.84 -20.29 8.82 -0.07 0.00 -20.29 16 11 C -0.50 -13.26 8.22 -34.44 -0.28 -13.55 16 12 H 0.06 1.64 7.74 -52.49 -0.41 1.23 16 13 C 0.07 1.86 5.21 -17.82 -0.09 1.77 16 14 N -0.89 -24.57 9.62 55.43 0.53 -24.04 16 15 Si 0.90 21.00 29.54 -169.99 -5.02 15.98 16 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 19 C 0.09 2.21 5.01 -3.68 -0.02 2.19 16 20 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 21 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 23 H 0.08 1.16 6.93 -51.93 -0.36 0.80 16 24 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 26 H 0.07 1.17 6.49 -51.93 -0.34 0.84 16 27 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 29 H 0.36 9.59 6.93 -39.30 -0.27 9.31 16 30 H 0.29 6.61 6.55 -39.29 -0.26 6.35 16 31 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 32 H 0.13 3.46 5.13 -51.93 -0.27 3.19 16 33 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 LS Contribution 264.90 15.07 3.99 3.99 Total: -1.00 -29.54 264.90 -5.30 -34.84 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -4.42 Total: 14.34 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 0.74 Total: 8.87 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.08 Total: -56.81 kcal Atomic # 8 Polarization: -20.55 SS G_CDS: -0.67 Total: -21.22 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -29.54 -5.30 -34.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259763726.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.245 kcal (2) G-P(sol) polarization free energy of solvation -29.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds