Wall clock time and date at job start Mon Mar 30 2020 03:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45192 * 1 3 3 C 1.34635 * 117.00563 * 2 1 4 4 O 1.21510 * 119.99385 * 359.97438 * 3 2 1 5 5 N 1.34773 * 120.00353 * 180.02562 * 3 2 1 6 6 C 1.46928 * 120.63179 * 0.02562 * 5 3 2 7 7 C 1.53159 * 108.76987 * 233.59029 * 6 5 3 8 8 C 1.53046 * 109.32667 * 305.35456 * 7 6 5 9 9 C 1.53039 * 109.52798 * 61.37318 * 8 7 6 10 10 N 1.46903 * 109.49911 * 58.59165 * 9 8 7 11 11 C 1.50694 * 109.49817 * 178.65877 * 9 8 7 12 12 H 1.07995 * 120.00018 * 359.97438 * 11 9 8 13 13 C 1.37879 * 119.99969 * 180.02562 * 11 9 8 14 14 N 1.31520 * 120.00186 * 359.97438 * 13 11 9 15 15 Si 1.86795 * 120.00132 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.47460 * 89.99886 * 15 13 11 17 17 H 1.48502 * 109.47453 * 209.99828 * 15 13 11 18 18 H 1.48497 * 109.46998 * 329.99754 * 15 13 11 19 19 C 1.46931 * 120.63029 * 179.97438 * 5 3 2 20 20 H 1.09006 * 109.46793 * 60.00189 * 1 2 3 21 21 H 1.09001 * 109.47164 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47258 * 300.00340 * 1 2 3 23 23 H 1.08999 * 109.58766 * 353.37877 * 6 5 3 24 24 H 1.08998 * 109.58326 * 113.79952 * 6 5 3 25 25 H 1.08996 * 109.48005 * 185.40991 * 7 6 5 26 26 H 1.08994 * 109.50349 * 65.31594 * 7 6 5 27 27 H 1.09002 * 109.46115 * 301.35771 * 8 7 6 28 28 H 1.09004 * 109.45806 * 181.38656 * 8 7 6 29 29 H 1.00893 * 111.00326 * 180.02562 * 10 9 8 30 30 H 1.00905 * 111.00013 * 303.95931 * 10 9 8 31 31 H 0.97000 * 120.00339 * 180.02562 * 14 13 11 32 32 H 1.08998 * 109.58425 * 6.63242 * 19 5 3 33 33 H 1.08999 * 109.58795 * 246.19692 * 19 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0633 1.1995 0.0000 4 8 1.4015 2.2186 -0.0005 5 7 3.4092 1.2700 -0.0005 6 6 4.2229 0.0467 -0.0017 7 6 5.2130 0.1123 1.1650 8 6 6.0242 1.4065 1.0687 9 6 5.0826 2.6089 1.1665 10 7 4.3472 2.5539 2.4370 11 6 5.8853 3.8827 1.1047 12 1 6.9599 3.8396 1.0060 13 6 5.2480 5.1033 1.1751 14 7 3.9394 5.1560 1.2958 15 14 6.2431 6.6824 1.0993 16 1 6.3789 7.1145 -0.3149 17 1 5.5507 7.7417 1.8762 18 1 7.5908 6.4463 1.6763 19 6 4.0906 2.5718 -0.0011 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8899 23 1 3.5760 -0.8226 0.1165 24 1 4.7699 -0.0274 -0.9415 25 1 5.8865 -0.7435 1.1187 26 1 4.6662 0.0950 2.1077 27 1 6.5513 1.4346 0.1151 28 1 6.7466 1.4437 1.8842 29 1 3.7180 3.3377 2.5249 30 1 3.8511 1.6801 2.5302 31 1 3.4909 6.0147 1.3450 32 1 3.3564 3.3686 0.1176 33 1 4.6269 2.7030 -0.9409 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259763726.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:05:24 Heat of formation + Delta-G solvation = -98.303590 kcal Electronic energy + Delta-G solvation = -17112.664126 eV Core-core repulsion = 14365.573150 eV Total energy + Delta-G solvation = -2747.090976 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.62668 -39.53646 -37.24226 -35.73023 -33.73437 -32.29341 -29.57644 -28.64269 -27.02513 -25.96651 -23.39512 -22.00933 -20.07430 -19.02671 -18.10313 -17.97900 -17.45365 -16.86039 -15.92381 -15.56030 -15.47273 -14.94208 -14.71888 -14.42066 -13.90184 -13.79454 -13.57929 -13.02325 -12.82577 -12.76893 -12.62828 -12.24436 -11.95605 -11.75813 -11.69004 -11.54014 -11.15931 -10.83066 -10.65285 -9.84552 -8.80524 -8.08213 -6.23341 1.27105 1.43781 1.46173 1.55103 1.79918 2.44699 3.05986 3.19663 4.09679 4.16940 4.30678 4.36309 4.40480 4.43148 4.63118 4.70084 4.72658 4.83558 4.92183 5.06186 5.17812 5.20274 5.39705 5.44828 5.58344 5.68352 5.93415 6.27708 6.47669 6.68628 7.05320 7.27953 7.34054 7.48937 8.93705 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.034116 B = 0.009535 C = 0.008032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.531765 B = 2935.760674 C = 3485.351701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.371 6.371 3 C 0.633 3.367 4 O -0.614 6.614 5 N -0.588 5.588 6 C 0.108 3.892 7 C -0.127 4.127 8 C -0.099 4.099 9 C 0.226 3.774 10 N -0.835 5.835 11 C -0.520 4.520 12 H 0.059 0.941 13 C 0.026 3.974 14 N -0.910 5.910 15 Si 0.957 3.043 16 H -0.278 1.278 17 H -0.289 1.289 18 H -0.269 1.269 19 C 0.106 3.894 20 H 0.055 0.945 21 H 0.144 0.856 22 H 0.052 0.948 23 H 0.103 0.897 24 H 0.080 0.920 25 H 0.103 0.897 26 H 0.058 0.942 27 H 0.058 0.942 28 H 0.053 0.947 29 H 0.340 0.660 30 H 0.301 0.699 31 H 0.261 0.739 32 H 0.085 0.915 33 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.886 -12.255 -2.864 12.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.284 6.284 3 C 0.388 3.612 4 O -0.506 6.506 5 N -0.327 5.327 6 C -0.013 4.013 7 C -0.165 4.165 8 C -0.137 4.137 9 C 0.134 3.866 10 N -0.366 5.366 11 C -0.559 4.559 12 H 0.077 0.923 13 C -0.175 4.175 14 N -0.550 5.550 15 Si 0.783 3.217 16 H -0.204 1.204 17 H -0.215 1.215 18 H -0.194 1.194 19 C -0.017 4.017 20 H 0.074 0.926 21 H 0.162 0.838 22 H 0.071 0.929 23 H 0.121 0.879 24 H 0.098 0.902 25 H 0.121 0.879 26 H 0.077 0.923 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.156 0.844 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -1.570 -11.802 -2.500 12.165 hybrid contribution -0.788 1.364 -0.633 1.698 sum -2.357 -10.438 -3.132 11.150 Atomic orbital electron populations 1.23458 0.73376 1.05575 1.02049 1.86207 1.25364 1.29672 1.87183 1.18410 0.83963 0.82178 0.76679 1.90967 1.65222 1.36445 1.57944 1.47452 1.01384 1.09992 1.73901 1.21963 0.93926 0.85615 0.99804 1.21914 0.98160 0.98610 0.97800 1.21497 0.97684 0.93767 1.00775 1.18757 0.89930 0.93663 0.84290 1.59404 1.34550 1.05653 1.36987 1.21329 0.93526 0.90839 1.50179 0.92253 1.25725 0.95753 1.02104 0.93882 1.69796 1.08609 1.25926 1.50633 0.85581 0.78907 0.79394 0.77787 1.20371 1.21535 1.19385 1.22772 0.96939 0.81974 1.00047 0.92582 0.83819 0.92902 0.87853 0.90180 0.87906 0.92334 0.92289 0.92795 0.84422 0.88777 0.92954 0.89669 0.94100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.19 10.56 113.37 1.20 2.39 16 2 O -0.37 -11.93 9.20 -55.44 -0.51 -12.44 16 3 C 0.63 26.36 8.43 129.79 1.09 27.46 16 4 O -0.61 -30.78 15.54 19.81 0.31 -30.47 16 5 N -0.59 -23.50 2.55 -949.21 -2.42 -25.92 16 6 C 0.11 3.22 6.45 86.35 0.56 3.78 16 7 C -0.13 -3.77 5.76 30.66 0.18 -3.59 16 8 C -0.10 -3.79 4.83 30.62 0.15 -3.64 16 9 C 0.23 10.74 0.64 2.87 0.00 10.74 16 10 N -0.84 -40.80 8.82 -154.14 -1.36 -42.15 16 11 C -0.52 -27.65 8.22 25.60 0.21 -27.44 16 12 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 13 C 0.03 1.38 5.21 84.65 0.44 1.82 16 14 N -0.91 -51.74 9.62 21.45 0.21 -51.53 16 15 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 16 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 17 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 18 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 19 C 0.11 5.08 5.01 86.38 0.43 5.52 16 20 H 0.06 1.39 8.14 -2.38 -0.02 1.37 16 21 H 0.14 2.05 8.14 -2.39 -0.02 2.03 16 22 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 23 H 0.10 2.61 6.93 -2.39 -0.02 2.59 16 24 H 0.08 2.12 8.14 -2.39 -0.02 2.11 16 25 H 0.10 2.30 8.14 -2.39 -0.02 2.28 16 26 H 0.06 1.87 6.49 -2.39 -0.02 1.85 16 27 H 0.06 2.14 8.14 -2.39 -0.02 2.13 16 28 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.34 18.74 6.93 -89.70 -0.62 18.12 16 30 H 0.30 13.53 6.55 -89.69 -0.59 12.94 16 31 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 32 H 0.09 4.86 5.13 -2.39 -0.01 4.85 16 33 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -65.28 264.90 2.43 -62.85 By element: Atomic # 1 Polarization: 37.11 SS G_CDS: -0.08 Total: 37.03 kcal Atomic # 6 Polarization: 12.77 SS G_CDS: 4.26 Total: 17.03 kcal Atomic # 7 Polarization: -116.03 SS G_CDS: -3.57 Total: -119.60 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -0.20 Total: -42.91 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -65.28 2.43 -62.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259763726.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.457 kcal (2) G-P(sol) polarization free energy of solvation -65.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds