Wall clock time and date at job start Mon Mar 30 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34771 * 119.99921 * 2 1 4 4 O 1.21586 * 119.99938 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00173 * 180.02562 * 3 2 1 6 6 C 1.47072 * 136.05391 * 359.94552 * 5 3 2 7 7 C 1.53500 * 87.98242 * 207.15705 * 6 5 3 8 8 C 1.47060 * 136.06052 * 180.02562 * 5 3 2 9 9 H 1.09001 * 113.47127 * 267.68375 * 8 5 3 10 10 C 1.52998 * 113.46860 * 38.06277 * 8 5 3 11 11 O 1.42906 * 109.47212 * 275.49618 * 10 8 5 12 12 C 1.42894 * 114.00137 * 179.97438 * 11 10 8 13 13 C 1.50706 * 109.47263 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99758 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00102 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47057 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 300.00068 * 17 15 13 20 20 H 1.48504 * 109.47102 * 60.00417 * 17 15 13 21 21 H 1.08996 * 109.47506 * 299.99964 * 1 2 3 22 22 H 1.09004 * 109.46975 * 59.99921 * 1 2 3 23 23 H 1.08998 * 109.47184 * 179.97438 * 1 2 3 24 24 H 0.96997 * 119.99542 * 180.02562 * 2 1 3 25 25 H 1.08999 * 113.47013 * 321.94074 * 6 5 3 26 26 H 1.08998 * 113.46421 * 92.32173 * 6 5 3 27 27 H 1.08995 * 114.20396 * 220.34472 * 7 6 5 28 28 H 1.09006 * 114.20101 * 87.52214 * 7 6 5 29 29 H 1.09001 * 109.47860 * 155.49923 * 10 8 5 30 30 H 1.09006 * 109.47541 * 35.49363 * 10 8 5 31 31 H 1.09001 * 109.47678 * 60.00187 * 12 11 10 32 32 H 1.09006 * 109.47375 * 299.99854 * 12 11 10 33 33 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2201 0.0005 5 7 3.4866 1.1672 -0.0005 6 6 4.5456 0.1466 -0.0002 7 6 5.4542 1.1674 0.6989 8 6 4.5455 2.1877 -0.0002 9 1 4.8858 2.4605 -0.9992 10 6 4.2178 3.4056 0.8659 11 8 3.4283 4.3278 0.1120 12 6 3.0652 5.5069 0.8329 13 6 2.2395 6.4034 -0.0535 14 1 2.0143 6.1026 -1.0661 15 6 1.7708 7.6071 0.4284 16 7 2.0446 7.9733 1.6616 17 14 0.7481 8.7186 -0.6706 18 1 0.3695 9.9434 0.0790 19 1 1.5409 9.0959 -1.8683 20 1 -0.4799 8.0000 -1.0961 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.9499 -0.8401 -0.0004 25 1 4.3121 -0.7210 0.6169 26 1 4.8858 -0.1261 -0.9992 27 1 6.4840 1.1673 0.3419 28 1 5.3725 1.1676 1.7859 29 1 5.1434 3.8897 1.1774 30 1 3.6608 3.0858 1.7467 31 1 3.9666 6.0348 1.1441 32 1 2.4841 5.2304 1.7128 33 1 2.5761 7.3962 2.2321 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259941274.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:36 Heat of formation + Delta-G solvation = -34.671481 kcal Electronic energy + Delta-G solvation = -16135.252509 eV Core-core repulsion = 13390.920829 eV Total energy + Delta-G solvation = -2744.331680 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.38533 -38.02700 -36.29134 -34.20648 -32.80756 -30.07166 -28.53422 -26.16278 -25.98231 -22.81814 -22.25618 -21.88470 -19.53235 -17.92551 -16.80142 -16.14154 -15.89138 -15.16260 -14.73827 -14.58828 -14.31035 -13.62247 -13.25754 -12.96701 -12.82191 -12.34426 -12.24318 -12.14852 -11.61618 -11.41925 -11.21597 -10.73275 -10.59533 -10.08344 -9.97223 -9.66196 -8.96204 -8.67157 -8.46673 -8.41691 -8.05959 -6.31947 -3.97466 2.63221 3.51583 3.55893 3.56408 3.74361 4.00633 4.24926 4.57503 4.79958 4.91054 5.13823 5.22214 5.30314 5.45901 5.46735 5.56167 5.59013 5.62143 5.77832 5.87990 6.07025 6.08811 6.38870 6.61505 6.92263 7.29784 7.33577 8.08493 8.29369 8.35807 8.81837 8.96022 8.99041 9.72076 11.08596 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.029186 B = 0.006809 C = 0.005821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.136354 B = 4111.424654 C = 4808.712338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.755 5.755 3 C 0.719 3.281 4 O -0.542 6.542 5 N -0.662 5.662 6 C 0.100 3.900 7 C -0.148 4.148 8 C 0.160 3.840 9 H 0.096 0.904 10 C 0.060 3.940 11 O -0.369 6.369 12 C 0.191 3.809 13 C -0.585 4.585 14 H 0.059 0.941 15 C 0.014 3.986 16 N -0.916 5.916 17 Si 1.079 2.921 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.286 1.286 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.070 0.930 24 H 0.390 0.610 25 H 0.072 0.928 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.095 0.905 29 H 0.045 0.955 30 H 0.039 0.961 31 H -0.010 1.010 32 H -0.008 1.008 33 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.378 -19.864 -2.040 20.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.035 4.035 2 N -0.412 5.412 3 C 0.421 3.579 4 O -0.415 6.415 5 N -0.404 5.404 6 C -0.024 4.024 7 C -0.186 4.186 8 C 0.056 3.944 9 H 0.114 0.886 10 C -0.019 4.019 11 O -0.288 6.288 12 C 0.117 3.883 13 C -0.623 4.623 14 H 0.077 0.923 15 C -0.188 4.188 16 N -0.553 5.553 17 Si 0.907 3.093 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.213 1.213 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.089 0.911 24 H 0.222 0.778 25 H 0.090 0.910 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.113 0.887 29 H 0.063 0.937 30 H 0.058 0.942 31 H 0.008 0.992 32 H 0.010 0.990 33 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.740 -17.605 -2.284 18.142 hybrid contribution 1.117 -2.032 0.352 2.346 sum 4.857 -19.637 -1.932 20.321 Atomic orbital electron populations 1.21338 0.78327 1.01303 1.02491 1.44892 1.07327 1.06923 1.82048 1.15428 0.79690 0.84356 0.78415 1.91160 1.65627 1.29618 1.55070 1.48856 1.02026 1.10569 1.78943 1.22832 0.86086 0.93264 1.00196 1.23466 0.98375 0.95596 1.01195 1.22555 0.83016 0.89141 0.99655 0.88639 1.22424 0.94879 0.90341 0.94238 1.87975 1.70445 1.31236 1.39125 1.20190 0.93481 0.81882 0.92774 1.21896 1.34979 1.04534 1.00934 0.92301 1.25911 0.97780 0.96909 0.98234 1.70793 1.37575 1.39946 1.06975 0.83409 0.75859 0.75561 0.74503 1.20707 1.21297 1.21281 0.92448 0.92420 0.91124 0.77773 0.91006 0.90166 0.88997 0.88654 0.93703 0.94232 0.99221 0.98982 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.31 10.70 59.85 0.64 1.95 16 2 N -0.76 -10.00 5.72 -72.07 -0.41 -10.41 16 3 C 0.72 13.32 8.70 -86.92 -0.76 12.56 16 4 O -0.54 -13.60 15.76 -3.13 -0.05 -13.65 16 5 N -0.66 -10.23 3.57 -183.22 -0.65 -10.88 16 6 C 0.10 0.92 8.28 -8.50 -0.07 0.85 16 7 C -0.15 -1.44 8.03 -26.23 -0.21 -1.65 16 8 C 0.16 2.50 4.33 -72.41 -0.31 2.18 16 9 H 0.10 1.48 8.14 -51.93 -0.42 1.05 16 10 C 0.06 1.22 5.38 37.16 0.20 1.42 16 11 O -0.37 -10.10 9.45 -43.65 -0.41 -10.51 16 12 C 0.19 5.79 5.00 36.01 0.18 5.97 16 13 C -0.59 -19.11 9.43 -34.44 -0.32 -19.44 16 14 H 0.06 1.96 7.81 -52.48 -0.41 1.55 16 15 C 0.01 0.43 5.46 -17.82 -0.10 0.34 16 16 N -0.92 -29.92 13.65 55.43 0.76 -29.16 16 17 Si 1.08 27.44 29.90 -169.99 -5.08 22.35 16 18 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.39 3.69 8.55 -40.82 -0.35 3.34 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 0.91 8.12 -51.93 -0.42 0.49 16 29 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 31 H -0.01 -0.29 8.01 -51.93 -0.42 -0.71 16 32 H -0.01 -0.24 8.01 -51.93 -0.42 -0.65 16 33 H 0.27 8.64 7.22 -40.82 -0.29 8.34 16 LS Contribution 285.68 15.07 4.31 4.31 Total: -1.00 -40.72 285.68 -7.21 -47.92 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -4.91 Total: -4.16 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: -0.75 Total: 4.19 kcal Atomic # 7 Polarization: -50.15 SS G_CDS: -0.31 Total: -50.46 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.46 Total: -24.16 kcal Atomic # 14 Polarization: 27.44 SS G_CDS: -5.08 Total: 22.35 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -40.72 -7.21 -47.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259941274.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.252 kcal (2) G-P(sol) polarization free energy of solvation -40.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds