Wall clock time and date at job start Mon Mar 30 2020 03:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34771 * 119.99921 * 2 1 4 4 O 1.21586 * 119.99938 * 0.02562 * 3 2 1 5 5 N 1.34778 * 120.00173 * 180.02562 * 3 2 1 6 6 C 1.47072 * 136.05391 * 359.94552 * 5 3 2 7 7 C 1.53500 * 87.98242 * 207.15705 * 6 5 3 8 8 C 1.47060 * 136.06052 * 180.02562 * 5 3 2 9 9 H 1.09001 * 113.47127 * 267.68375 * 8 5 3 10 10 C 1.52998 * 113.46860 * 38.06277 * 8 5 3 11 11 O 1.42906 * 109.47212 * 275.49618 * 10 8 5 12 12 C 1.42894 * 114.00137 * 179.97438 * 11 10 8 13 13 C 1.50706 * 109.47263 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99758 * 0.02562 * 13 12 11 15 15 C 1.37871 * 120.00102 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.47057 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 300.00068 * 17 15 13 20 20 H 1.48504 * 109.47102 * 60.00417 * 17 15 13 21 21 H 1.08996 * 109.47506 * 299.99964 * 1 2 3 22 22 H 1.09004 * 109.46975 * 59.99921 * 1 2 3 23 23 H 1.08998 * 109.47184 * 179.97438 * 1 2 3 24 24 H 0.96997 * 119.99542 * 180.02562 * 2 1 3 25 25 H 1.08999 * 113.47013 * 321.94074 * 6 5 3 26 26 H 1.08998 * 113.46421 * 92.32173 * 6 5 3 27 27 H 1.08995 * 114.20396 * 220.34472 * 7 6 5 28 28 H 1.09006 * 114.20101 * 87.52214 * 7 6 5 29 29 H 1.09001 * 109.47860 * 155.49923 * 10 8 5 30 30 H 1.09006 * 109.47541 * 35.49363 * 10 8 5 31 31 H 1.09001 * 109.47678 * 60.00187 * 12 11 10 32 32 H 1.09006 * 109.47375 * 299.99854 * 12 11 10 33 33 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5309 2.2201 0.0005 5 7 3.4866 1.1672 -0.0005 6 6 4.5456 0.1466 -0.0002 7 6 5.4542 1.1674 0.6989 8 6 4.5455 2.1877 -0.0002 9 1 4.8858 2.4605 -0.9992 10 6 4.2178 3.4056 0.8659 11 8 3.4283 4.3278 0.1120 12 6 3.0652 5.5069 0.8329 13 6 2.2395 6.4034 -0.0535 14 1 2.0143 6.1026 -1.0661 15 6 1.7708 7.6071 0.4284 16 7 2.0446 7.9733 1.6616 17 14 0.7481 8.7186 -0.6706 18 1 0.3695 9.9434 0.0790 19 1 1.5409 9.0959 -1.8683 20 1 -0.4799 8.0000 -1.0961 21 1 -0.3634 0.5138 0.8899 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.9499 -0.8401 -0.0004 25 1 4.3121 -0.7210 0.6169 26 1 4.8858 -0.1261 -0.9992 27 1 6.4840 1.1673 0.3419 28 1 5.3725 1.1676 1.7859 29 1 5.1434 3.8897 1.1774 30 1 3.6608 3.0858 1.7467 31 1 3.9666 6.0348 1.1441 32 1 2.4841 5.2304 1.7128 33 1 2.5761 7.3962 2.2321 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259941274.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:36 Heat of formation + Delta-G solvation = -67.593622 kcal Electronic energy + Delta-G solvation = -16136.680120 eV Core-core repulsion = 13390.920829 eV Total energy + Delta-G solvation = -2745.759292 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.57443 -39.37616 -38.29717 -35.53976 -35.21983 -31.33069 -30.11183 -28.18188 -27.13090 -24.81839 -23.92398 -23.01616 -20.73447 -19.38243 -18.87620 -17.58499 -17.49870 -16.79682 -16.45154 -15.89711 -15.63579 -15.57557 -14.72696 -14.63276 -14.23405 -14.03934 -13.45308 -13.37100 -13.17368 -13.04901 -12.58867 -12.54142 -12.29714 -11.93257 -11.63983 -11.17426 -10.89608 -10.87418 -10.36748 -10.26750 -9.54230 -8.89903 -6.58472 1.46128 1.49571 1.57220 1.79027 2.19132 2.46018 2.94165 2.98091 3.10751 3.46482 3.94661 4.06024 4.18533 4.27754 4.37589 4.42339 4.47683 4.58353 4.59321 4.62849 4.80957 4.88527 4.93732 4.95986 5.29253 5.50452 5.64141 5.87169 6.24544 6.27024 6.66766 7.14019 7.22096 7.65799 8.51235 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.029186 B = 0.006809 C = 0.005821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.136354 B = 4111.424654 C = 4808.712338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.108 3.892 2 N -0.734 5.734 3 C 0.705 3.295 4 O -0.626 6.626 5 N -0.673 5.673 6 C 0.107 3.893 7 C -0.120 4.120 8 C 0.143 3.857 9 H 0.096 0.904 10 C 0.050 3.950 11 O -0.392 6.392 12 C 0.205 3.795 13 C -0.621 4.621 14 H 0.044 0.956 15 C -0.030 4.030 16 N -0.926 5.926 17 Si 1.130 2.870 18 H -0.268 1.268 19 H -0.261 1.261 20 H -0.274 1.274 21 H 0.035 0.965 22 H 0.038 0.962 23 H 0.123 0.877 24 H 0.413 0.587 25 H 0.104 0.896 26 H 0.108 0.892 27 H 0.131 0.869 28 H 0.098 0.902 29 H 0.064 0.936 30 H 0.020 0.980 31 H -0.014 1.014 32 H -0.037 1.037 33 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.491 -21.891 -2.878 23.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.392 5.392 3 C 0.407 3.593 4 O -0.505 6.505 5 N -0.414 5.414 6 C -0.013 4.013 7 C -0.158 4.158 8 C 0.039 3.961 9 H 0.114 0.886 10 C -0.027 4.027 11 O -0.311 6.311 12 C 0.130 3.870 13 C -0.658 4.658 14 H 0.063 0.937 15 C -0.227 4.227 16 N -0.562 5.562 17 Si 0.948 3.052 18 H -0.192 1.192 19 H -0.186 1.186 20 H -0.200 1.200 21 H 0.054 0.946 22 H 0.057 0.943 23 H 0.142 0.858 24 H 0.249 0.751 25 H 0.122 0.878 26 H 0.126 0.874 27 H 0.149 0.851 28 H 0.116 0.884 29 H 0.082 0.918 30 H 0.038 0.962 31 H 0.004 0.996 32 H -0.019 1.019 33 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 4.932 -19.755 -3.106 20.597 hybrid contribution 0.849 -1.525 0.667 1.868 sum 5.782 -21.279 -2.440 22.185 Atomic orbital electron populations 1.21480 0.77585 1.04058 1.00552 1.44700 1.07794 1.06349 1.80340 1.15909 0.80758 0.84514 0.78070 1.91098 1.67799 1.32777 1.58817 1.49062 1.01725 1.12906 1.77688 1.23189 0.82892 0.92928 1.02328 1.23468 0.99421 0.91828 1.01056 1.22909 0.85181 0.88303 0.99726 0.88610 1.22851 0.94144 0.91205 0.94538 1.87923 1.71838 1.31124 1.40214 1.19815 0.92590 0.83035 0.91569 1.22232 1.36714 1.06083 1.00811 0.93747 1.27735 0.97868 0.98317 0.98791 1.70922 1.37857 1.39793 1.07619 0.82831 0.74864 0.74021 0.73504 1.19221 1.18615 1.19976 0.94583 0.94337 0.85820 0.75091 0.87780 0.87449 0.85064 0.88383 0.91790 0.96176 0.99600 1.01949 0.93790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.50 10.70 127.77 1.37 3.86 16 2 N -0.73 -18.61 5.72 -500.19 -2.86 -21.47 16 3 C 0.71 26.51 8.70 179.06 1.56 28.06 16 4 O -0.63 -33.31 15.76 4.06 0.06 -33.25 16 5 N -0.67 -20.02 3.57 -851.84 -3.04 -23.06 16 6 C 0.11 1.53 8.28 83.18 0.69 2.22 16 7 C -0.12 -1.87 8.03 30.92 0.25 -1.62 16 8 C 0.14 4.33 4.33 41.78 0.18 4.51 16 9 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 10 C 0.05 2.12 5.38 71.98 0.39 2.51 16 11 O -0.39 -22.58 9.45 -140.93 -1.33 -23.91 16 12 C 0.21 13.13 5.00 71.24 0.36 13.49 16 13 C -0.62 -42.19 9.43 25.60 0.24 -41.95 16 14 H 0.04 3.07 7.81 -2.91 -0.02 3.05 16 15 C -0.03 -1.95 5.46 84.65 0.46 -1.48 16 16 N -0.93 -61.67 13.65 21.45 0.29 -61.37 16 17 Si 1.13 55.10 29.90 68.60 2.05 57.16 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 19 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 20 H -0.27 -12.79 7.11 99.48 0.71 -12.09 16 21 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 22 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 23 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 24 H 0.41 6.54 8.55 -92.71 -0.79 5.75 16 25 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.11 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 28 H 0.10 1.53 8.12 -2.38 -0.02 1.51 16 29 H 0.06 2.39 8.14 -2.39 -0.02 2.37 16 30 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 31 H -0.01 -0.85 8.01 -2.39 -0.02 -0.87 16 32 H -0.04 -2.52 8.01 -2.38 -0.02 -2.54 16 33 H 0.25 17.11 7.22 -92.71 -0.67 16.44 16 Total: -1.00 -96.16 285.68 1.07 -95.09 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: 0.40 Total: 1.21 kcal Atomic # 6 Polarization: 4.11 SS G_CDS: 5.49 Total: 9.60 kcal Atomic # 7 Polarization: -100.30 SS G_CDS: -5.60 Total: -105.90 kcal Atomic # 8 Polarization: -55.89 SS G_CDS: -1.27 Total: -57.15 kcal Atomic # 14 Polarization: 55.10 SS G_CDS: 2.05 Total: 57.16 kcal Total: -96.16 1.07 -95.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259941274.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.495 kcal (2) G-P(sol) polarization free energy of solvation -96.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds