Wall clock time and date at job start Mon Mar 30 2020 03:13:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46939 * 2 1 4 4 C 1.53008 * 109.46981 * 119.99664 * 2 1 3 5 5 C 1.53001 * 109.47225 * 66.71276 * 4 2 1 6 6 C 1.52994 * 109.62664 * 173.56375 * 5 4 2 7 7 O 1.43750 * 109.63216 * 293.95609 * 5 4 2 8 8 C 1.44779 * 104.81475 * 144.19195 * 7 5 4 9 9 C 1.54913 * 101.72510 * 323.89499 * 8 7 5 10 10 H 1.09000 * 110.69719 * 277.17124 * 9 8 7 11 11 C 1.53000 * 110.69719 * 153.95736 * 9 8 7 12 12 C 1.50699 * 109.47004 * 175.00394 * 11 9 8 13 13 H 1.08003 * 120.00226 * 359.97438 * 12 11 9 14 14 C 1.37873 * 119.99902 * 180.02562 * 12 11 9 15 15 N 1.31511 * 120.00410 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99976 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47168 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47019 * 119.99748 * 16 14 12 19 19 H 1.48497 * 109.47057 * 239.99730 * 16 14 12 20 20 O 1.43365 * 109.62932 * 53.32039 * 5 4 2 21 21 H 1.09004 * 109.47147 * 171.52543 * 1 2 3 22 22 H 1.09001 * 109.47241 * 291.52273 * 1 2 3 23 23 H 1.08995 * 109.47348 * 51.52341 * 1 2 3 24 24 H 1.08994 * 109.47436 * 239.99378 * 2 1 3 25 25 H 1.09005 * 109.46830 * 179.97438 * 3 2 1 26 26 H 1.09003 * 109.46803 * 299.99391 * 3 2 1 27 27 H 1.08994 * 109.47565 * 59.99457 * 3 2 1 28 28 H 1.09003 * 109.46684 * 306.71255 * 4 2 1 29 29 H 1.08993 * 109.46856 * 186.71330 * 4 2 1 30 30 H 1.08999 * 109.47691 * 64.95531 * 6 5 4 31 31 H 1.09002 * 109.47105 * 184.95843 * 6 5 4 32 32 H 1.09002 * 109.47371 * 304.95650 * 6 5 4 33 33 H 1.08999 * 110.97762 * 82.00691 * 8 7 5 34 34 H 1.09006 * 110.97455 * 205.78573 * 8 7 5 35 35 H 1.08999 * 109.47102 * 294.99960 * 11 9 8 36 36 H 1.08996 * 109.47152 * 55.00172 * 11 9 8 37 37 H 0.96998 * 120.00697 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6723 -2.2042 1.1680 6 6 2.3166 -2.9580 2.3330 7 8 0.2437 -2.3516 1.2285 8 6 -0.0516 -3.4614 0.3469 9 6 0.9903 -3.2537 -0.7805 10 1 0.6330 -2.5223 -1.5054 11 6 1.3170 -4.5818 -1.4663 12 6 2.2363 -4.3315 -2.6339 13 1 2.5552 -3.3256 -2.8641 14 6 2.6693 -5.3864 -3.4088 15 7 2.2806 -6.6111 -3.1289 16 14 3.8082 -5.0760 -4.8567 17 1 4.0946 -3.6224 -4.9585 18 1 5.0785 -5.8183 -4.6552 19 1 3.1565 -5.5405 -6.1076 20 8 2.1407 -2.7491 -0.0725 21 1 -0.3634 -1.0165 -0.1515 22 1 -0.3634 0.3770 0.9560 23 1 -0.3634 0.6394 -0.8045 24 1 1.8934 -0.5139 -0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6766 1.9564 0.8899 28 1 1.5818 -0.2813 2.1352 29 1 3.1233 -0.6183 1.3114 30 1 1.8906 -2.6072 3.2730 31 1 2.1268 -4.0258 2.2242 32 1 3.3917 -2.7782 2.3320 33 1 0.1054 -4.4140 0.8527 34 1 -1.0673 -3.3908 -0.0426 35 1 1.8062 -5.2473 -0.7550 36 1 0.3958 -5.0436 -1.8215 37 1 2.5855 -7.3534 -3.6738 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259956207.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:09 Heat of formation + Delta-G solvation = -116.587956 kcal Electronic energy + Delta-G solvation = -17136.914063 eV Core-core repulsion = 14492.570561 eV Total energy + Delta-G solvation = -2644.343502 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.25291 -35.71774 -34.51055 -33.24224 -31.81851 -29.46784 -26.96770 -26.66231 -26.17488 -23.19638 -20.90331 -20.55055 -19.70677 -17.15301 -16.19694 -15.76201 -15.03131 -14.68804 -14.27134 -13.84115 -13.35344 -13.13846 -12.87175 -12.60828 -12.37331 -12.05886 -11.93001 -11.75600 -11.71016 -11.43715 -11.20712 -11.10598 -10.79582 -10.53750 -10.52879 -10.44066 -10.30066 -9.65188 -9.31073 -9.07780 -8.77562 -8.39334 -6.01574 -4.02334 3.32084 3.39513 3.44968 4.00275 4.45916 4.51752 4.94477 5.11877 5.21769 5.34248 5.37941 5.46103 5.58829 5.63634 5.76762 5.80190 5.84338 5.90097 5.96369 6.04655 6.09204 6.13749 6.22533 6.30848 6.38033 6.46054 6.48582 6.69514 6.74581 6.81692 7.43096 7.61398 7.90910 7.96551 8.37080 9.02071 9.60975 11.10139 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.028748 B = 0.007876 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.734639 B = 3554.202395 C = 3975.761224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.097 4.097 3 C -0.144 4.144 4 C -0.112 4.112 5 C 0.249 3.751 6 C -0.169 4.169 7 O -0.377 6.377 8 C 0.014 3.986 9 C 0.065 3.935 10 H 0.072 0.928 11 C 0.022 3.978 12 C -0.509 4.509 13 H 0.059 0.941 14 C 0.056 3.944 15 N -0.898 5.898 16 Si 0.893 3.107 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 O -0.358 6.358 21 H 0.072 0.928 22 H 0.046 0.954 23 H 0.041 0.959 24 H 0.081 0.919 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.027 0.973 36 H 0.032 0.968 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.818 10.519 8.481 13.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 C -0.201 4.201 4 C -0.149 4.149 5 C 0.172 3.828 6 C -0.227 4.227 7 O -0.298 6.298 8 C -0.063 4.063 9 C 0.008 3.992 10 H 0.090 0.910 11 C -0.014 4.014 12 C -0.547 4.547 13 H 0.077 0.923 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 O -0.279 6.279 21 H 0.091 0.909 22 H 0.066 0.934 23 H 0.060 0.940 24 H 0.099 0.901 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.045 0.955 36 H 0.050 0.950 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.727 10.471 8.484 13.749 hybrid contribution 0.595 -0.125 -0.785 0.993 sum -2.132 10.346 7.698 13.071 Atomic orbital electron populations 1.21992 0.95036 1.02913 1.00380 1.21050 0.96276 0.95354 0.98879 1.21829 1.00682 0.96422 1.01161 1.21945 1.01246 0.93050 0.98702 1.23243 0.79515 0.93255 0.86818 1.22353 1.01411 1.01421 0.97510 1.89157 1.22181 1.51272 1.67225 1.24515 1.00926 0.90159 0.90650 1.24051 0.83334 0.99198 0.92595 0.91041 1.19272 0.97632 0.89012 0.95526 1.21148 1.28288 0.93659 1.11603 0.92319 1.24996 0.96528 0.95116 0.97872 1.69956 1.45346 0.98723 1.39777 0.86511 0.80655 0.78412 0.82324 1.19663 1.21026 1.21069 1.89004 1.31120 1.78244 1.29576 0.90877 0.93443 0.93966 0.90067 0.92978 0.92942 0.93236 0.91092 0.90645 0.91617 0.91754 0.91239 0.91140 0.88365 0.95514 0.94967 0.93034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 8.32 37.16 0.31 -1.78 16 2 C -0.10 -1.43 2.79 -90.62 -0.25 -1.68 16 3 C -0.14 -1.75 9.18 37.16 0.34 -1.41 16 4 C -0.11 -1.64 4.31 -26.73 -0.12 -1.75 16 5 C 0.25 4.25 1.04 -26.73 -0.03 4.22 16 6 C -0.17 -2.58 9.19 37.15 0.34 -2.24 16 7 O -0.38 -6.39 8.27 -59.04 -0.49 -6.88 16 8 C 0.01 0.24 6.79 38.17 0.26 0.50 16 9 C 0.07 1.36 3.14 -25.72 -0.08 1.28 16 10 H 0.07 1.49 7.78 -51.93 -0.40 1.09 16 11 C 0.02 0.57 4.73 -27.88 -0.13 0.44 16 12 C -0.51 -14.43 9.04 -34.44 -0.31 -14.74 16 13 H 0.06 1.66 7.74 -52.48 -0.41 1.26 16 14 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 15 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 16 Si 0.89 21.91 29.54 -169.99 -5.02 16.88 16 17 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 20 O -0.36 -7.55 9.44 -59.04 -0.56 -8.10 16 21 H 0.07 1.15 4.60 -51.93 -0.24 0.92 16 22 H 0.05 0.63 8.10 -51.93 -0.42 0.21 16 23 H 0.04 0.55 8.13 -51.93 -0.42 0.13 16 24 H 0.08 1.41 7.29 -51.93 -0.38 1.03 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.94 8.10 -51.93 -0.42 0.52 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 33 H 0.07 1.22 8.04 -51.93 -0.42 0.80 16 34 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 295.35 15.07 4.45 4.45 Total: -1.00 -29.97 295.35 -7.12 -37.08 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -6.47 Total: -1.67 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 0.23 Total: -15.66 kcal Atomic # 7 Polarization: -26.84 SS G_CDS: 0.74 Total: -26.10 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -1.05 Total: -14.98 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.97 -7.12 -37.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259956207.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.504 kcal (2) G-P(sol) polarization free energy of solvation -29.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds