Wall clock time and date at job start Mon Mar 30 2020 03:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46939 * 2 1 4 4 C 1.53008 * 109.46981 * 119.99664 * 2 1 3 5 5 C 1.53001 * 109.47225 * 66.71276 * 4 2 1 6 6 C 1.52994 * 109.62664 * 173.56375 * 5 4 2 7 7 O 1.43750 * 109.63216 * 293.95609 * 5 4 2 8 8 C 1.44779 * 104.81475 * 144.19195 * 7 5 4 9 9 C 1.54913 * 101.72510 * 323.89499 * 8 7 5 10 10 H 1.09000 * 110.69719 * 277.17124 * 9 8 7 11 11 C 1.53000 * 110.69719 * 153.95736 * 9 8 7 12 12 C 1.50699 * 109.47004 * 175.00394 * 11 9 8 13 13 H 1.08003 * 120.00226 * 359.97438 * 12 11 9 14 14 C 1.37873 * 119.99902 * 180.02562 * 12 11 9 15 15 N 1.31511 * 120.00410 * 359.97438 * 14 12 11 16 16 Si 1.86807 * 119.99976 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47168 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47019 * 119.99748 * 16 14 12 19 19 H 1.48497 * 109.47057 * 239.99730 * 16 14 12 20 20 O 1.43365 * 109.62932 * 53.32039 * 5 4 2 21 21 H 1.09004 * 109.47147 * 171.52543 * 1 2 3 22 22 H 1.09001 * 109.47241 * 291.52273 * 1 2 3 23 23 H 1.08995 * 109.47348 * 51.52341 * 1 2 3 24 24 H 1.08994 * 109.47436 * 239.99378 * 2 1 3 25 25 H 1.09005 * 109.46830 * 179.97438 * 3 2 1 26 26 H 1.09003 * 109.46803 * 299.99391 * 3 2 1 27 27 H 1.08994 * 109.47565 * 59.99457 * 3 2 1 28 28 H 1.09003 * 109.46684 * 306.71255 * 4 2 1 29 29 H 1.08993 * 109.46856 * 186.71330 * 4 2 1 30 30 H 1.08999 * 109.47691 * 64.95531 * 6 5 4 31 31 H 1.09002 * 109.47105 * 184.95843 * 6 5 4 32 32 H 1.09002 * 109.47371 * 304.95650 * 6 5 4 33 33 H 1.08999 * 110.97762 * 82.00691 * 8 7 5 34 34 H 1.09006 * 110.97455 * 205.78573 * 8 7 5 35 35 H 1.08999 * 109.47102 * 294.99960 * 11 9 8 36 36 H 1.08996 * 109.47152 * 55.00172 * 11 9 8 37 37 H 0.96998 * 120.00697 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 1.6723 -2.2042 1.1680 6 6 2.3166 -2.9580 2.3330 7 8 0.2437 -2.3516 1.2285 8 6 -0.0516 -3.4614 0.3469 9 6 0.9903 -3.2537 -0.7805 10 1 0.6330 -2.5223 -1.5054 11 6 1.3170 -4.5818 -1.4663 12 6 2.2363 -4.3315 -2.6339 13 1 2.5552 -3.3256 -2.8641 14 6 2.6693 -5.3864 -3.4088 15 7 2.2806 -6.6111 -3.1289 16 14 3.8082 -5.0760 -4.8567 17 1 4.0946 -3.6224 -4.9585 18 1 5.0785 -5.8183 -4.6552 19 1 3.1565 -5.5405 -6.1076 20 8 2.1407 -2.7491 -0.0725 21 1 -0.3634 -1.0165 -0.1515 22 1 -0.3634 0.3770 0.9560 23 1 -0.3634 0.6394 -0.8045 24 1 1.8934 -0.5139 -0.8899 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8901 27 1 1.6766 1.9564 0.8899 28 1 1.5818 -0.2813 2.1352 29 1 3.1233 -0.6183 1.3114 30 1 1.8906 -2.6072 3.2730 31 1 2.1268 -4.0258 2.2242 32 1 3.3917 -2.7782 2.3320 33 1 0.1054 -4.4140 0.8527 34 1 -1.0673 -3.3908 -0.0426 35 1 1.8062 -5.2473 -0.7550 36 1 0.3958 -5.0436 -1.8215 37 1 2.5855 -7.3534 -3.6738 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259956207.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:08 Heat of formation + Delta-G solvation = -133.898240 kcal Electronic energy + Delta-G solvation = -17137.664693 eV Core-core repulsion = 14492.570561 eV Total energy + Delta-G solvation = -2645.094132 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.68377 -36.95245 -36.06094 -35.16606 -33.42426 -31.16489 -28.34217 -27.93845 -27.50604 -25.09697 -22.34063 -22.18913 -20.88234 -18.77883 -18.22207 -17.17258 -16.68294 -16.19093 -15.81827 -15.15999 -14.90412 -14.44851 -14.29734 -14.02988 -13.78877 -13.53555 -13.45020 -13.15233 -13.04229 -12.99027 -12.80492 -12.54637 -12.42394 -12.29147 -11.98223 -11.73642 -11.57607 -11.40998 -11.13347 -10.72995 -10.60794 -10.26163 -8.22181 -6.30791 1.37925 1.38812 1.52135 2.39839 2.58764 3.08191 3.18258 3.75501 3.78489 3.93583 4.07025 4.13919 4.28350 4.39502 4.47169 4.54690 4.71969 4.72373 4.80257 4.82521 4.86909 4.90749 5.00584 5.07372 5.11928 5.21985 5.23462 5.34569 5.37702 5.53257 5.57234 5.63159 5.75015 6.18457 6.40569 6.81143 7.36830 8.89924 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.028748 B = 0.007876 C = 0.007041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.734639 B = 3554.202395 C = 3975.761224 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 C -0.138 4.138 4 C -0.108 4.108 5 C 0.237 3.763 6 C -0.168 4.168 7 O -0.370 6.370 8 C 0.024 3.976 9 C 0.072 3.928 10 H 0.068 0.932 11 C 0.028 3.972 12 C -0.529 4.529 13 H 0.052 0.948 14 C 0.002 3.998 15 N -0.932 5.932 16 Si 0.961 3.039 17 H -0.267 1.267 18 H -0.279 1.279 19 H -0.274 1.274 20 O -0.386 6.386 21 H 0.055 0.945 22 H 0.059 0.941 23 H 0.049 0.951 24 H 0.046 0.954 25 H 0.054 0.946 26 H 0.056 0.944 27 H 0.066 0.934 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.047 0.953 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.123 0.877 35 H -0.002 1.002 36 H 0.020 0.980 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.754 12.110 9.000 15.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.195 4.195 4 C -0.146 4.146 5 C 0.161 3.839 6 C -0.226 4.226 7 O -0.291 6.291 8 C -0.053 4.053 9 C 0.015 3.985 10 H 0.086 0.914 11 C -0.009 4.009 12 C -0.567 4.567 13 H 0.071 0.929 14 C -0.195 4.195 15 N -0.572 5.572 16 Si 0.786 3.214 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.199 1.199 20 O -0.308 6.308 21 H 0.074 0.926 22 H 0.078 0.922 23 H 0.068 0.932 24 H 0.065 0.935 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.085 0.915 28 H 0.111 0.889 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.066 0.934 32 H 0.094 0.906 33 H 0.087 0.913 34 H 0.141 0.859 35 H 0.016 0.984 36 H 0.038 0.962 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.668 12.073 9.014 15.302 hybrid contribution 0.575 -0.623 -0.907 1.242 sum -2.094 11.450 8.107 14.185 Atomic orbital electron populations 1.21949 0.94656 1.02058 1.01357 1.21031 0.96635 0.96675 0.97438 1.21775 1.00840 0.94666 1.02253 1.21972 1.01845 0.91228 0.99533 1.23652 0.79592 0.94971 0.85702 1.22370 1.01970 1.00260 0.97949 1.89158 1.22204 1.50915 1.66849 1.24417 1.01055 0.90386 0.89412 1.23718 0.84526 0.96559 0.93679 0.91368 1.19096 0.96218 0.91017 0.94535 1.21479 1.28970 0.93485 1.12720 0.92948 1.25872 0.98077 0.94834 1.00737 1.70064 1.46507 0.99590 1.41068 0.85455 0.78538 0.78494 0.78929 1.19095 1.20457 1.19948 1.88959 1.31765 1.78678 1.31352 0.92637 0.92198 0.93195 0.93507 0.92733 0.92537 0.91460 0.88864 0.90058 0.88985 0.93375 0.90573 0.91266 0.85862 0.98379 0.96169 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 8.32 71.98 0.60 -3.23 16 2 C -0.10 -2.78 2.79 -10.79 -0.03 -2.81 16 3 C -0.14 -3.04 9.18 71.98 0.66 -2.38 16 4 C -0.11 -2.95 4.31 30.60 0.13 -2.82 16 5 C 0.24 7.83 1.04 30.59 0.03 7.86 16 6 C -0.17 -4.88 9.19 71.98 0.66 -4.22 16 7 O -0.37 -11.98 8.27 -126.22 -1.04 -13.02 16 8 C 0.02 0.81 6.79 72.64 0.49 1.30 16 9 C 0.07 3.07 3.14 31.25 0.10 3.17 16 10 H 0.07 2.92 7.78 -2.39 -0.02 2.90 16 11 C 0.03 1.50 4.73 29.85 0.14 1.64 16 12 C -0.53 -30.67 9.04 25.60 0.23 -30.44 16 13 H 0.05 3.03 7.74 -2.91 -0.02 3.01 16 14 C 0.00 0.14 5.46 84.65 0.46 0.60 16 15 N -0.93 -56.59 13.29 21.45 0.28 -56.30 16 16 Si 0.96 45.19 29.54 68.60 2.03 47.22 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.11 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 20 O -0.39 -16.43 9.44 -126.22 -1.19 -17.62 16 21 H 0.05 1.68 4.60 -2.38 -0.01 1.67 16 22 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 23 H 0.05 1.23 8.13 -2.39 -0.02 1.21 16 24 H 0.05 1.63 7.29 -2.39 -0.02 1.61 16 25 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.09 2.14 8.10 -2.39 -0.02 2.12 16 29 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 31 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 32 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.07 2.39 8.04 -2.39 -0.02 2.37 16 34 H 0.12 3.57 8.14 -2.38 -0.02 3.55 16 35 H 0.00 -0.13 8.14 -2.39 -0.02 -0.14 16 36 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.26 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -64.48 295.35 4.57 -59.92 By element: Atomic # 1 Polarization: 10.13 SS G_CDS: 1.01 Total: 11.14 kcal Atomic # 6 Polarization: -34.81 SS G_CDS: 3.48 Total: -31.33 kcal Atomic # 7 Polarization: -56.59 SS G_CDS: 0.28 Total: -56.30 kcal Atomic # 8 Polarization: -28.41 SS G_CDS: -2.23 Total: -30.65 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Total: -64.48 4.57 -59.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259956207.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.983 kcal (2) G-P(sol) polarization free energy of solvation -64.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds