Wall clock time and date at job start Mon Mar 30 2020 02:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45194 * 109.47137 * 2 1 4 4 C 1.34639 * 117.00096 * 179.97438 * 3 2 1 5 5 O 1.21514 * 119.99368 * 359.97438 * 4 3 2 6 6 N 1.34766 * 120.00255 * 179.97438 * 4 3 2 7 7 C 1.47590 * 134.49299 * 180.02562 * 6 4 3 8 8 C 1.53948 * 86.11489 * 155.35478 * 7 6 4 9 9 N 1.46906 * 113.73956 * 137.95380 * 8 7 6 10 10 C 1.46898 * 110.99888 * 156.92336 * 9 8 7 11 11 C 1.50705 * 109.46661 * 180.02562 * 10 9 8 12 12 H 1.07998 * 120.00458 * 359.97438 * 11 10 9 13 13 C 1.37877 * 119.99662 * 180.02562 * 11 10 9 14 14 N 1.31519 * 120.00400 * 359.97438 * 13 11 10 15 15 Si 1.86804 * 120.00094 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46608 * 359.97438 * 15 13 11 17 17 H 1.48502 * 109.46746 * 119.99726 * 15 13 11 18 18 H 1.48497 * 109.47347 * 240.00106 * 15 13 11 19 19 C 1.47817 * 134.45835 * 359.86226 * 6 4 3 20 20 H 1.09004 * 109.47507 * 300.00514 * 1 2 3 21 21 H 1.09008 * 109.46999 * 60.00551 * 1 2 3 22 22 H 1.09004 * 109.47270 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47137 * 239.99475 * 2 1 3 24 24 H 1.09008 * 109.46319 * 119.99764 * 2 1 3 25 25 H 1.08997 * 113.76674 * 41.05576 * 7 6 4 26 26 H 1.08995 * 113.76488 * 269.65560 * 7 6 4 27 27 H 1.09000 * 113.74503 * 269.15237 * 8 7 6 28 28 H 1.00902 * 110.99923 * 280.88277 * 9 8 7 29 29 H 1.08995 * 109.47296 * 299.99911 * 10 9 8 30 30 H 1.08997 * 109.47334 * 60.00212 * 10 9 8 31 31 H 0.96997 * 120.00478 * 180.02562 * 14 13 11 32 32 H 1.08997 * 113.76873 * 90.38473 * 19 6 4 33 33 H 1.08997 * 113.83619 * 318.92029 * 19 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3488 1.5453 0.0005 5 8 4.0889 0.5816 0.0015 6 7 3.8639 2.7907 0.0000 7 6 5.2321 3.3440 -0.0001 8 6 4.6121 4.5988 -0.6412 9 7 5.1336 5.8599 -0.0973 10 6 4.9554 6.9597 -1.0548 11 6 5.5015 8.2338 -0.4635 12 1 5.9370 8.2273 0.5248 13 6 5.4443 9.4080 -1.1839 14 7 4.9136 9.4161 -2.3872 15 14 6.1206 10.9875 -0.4508 16 1 6.6589 10.7127 0.9056 17 1 7.2064 11.5106 -1.3183 18 1 5.0334 11.9947 -0.3567 19 6 3.2847 4.1506 -0.0036 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8901 22 1 -0.3634 -1.0277 0.0005 23 1 1.8933 -0.5139 -0.8899 24 1 1.8932 -0.5139 0.8901 25 1 5.9215 2.8111 -0.6550 26 1 5.6370 3.5147 0.9974 27 1 4.6046 4.5769 -1.7309 28 1 4.7018 6.0778 0.7882 29 1 5.4896 6.7291 -1.9765 30 1 3.8945 7.0847 -1.2713 31 1 4.8737 10.2421 -2.8942 32 1 3.1161 4.5589 0.9929 33 1 2.4225 4.2604 -0.6612 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259986091.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:05 Heat of formation + Delta-G solvation = -68.967136 kcal Electronic energy + Delta-G solvation = -15441.328075 eV Core-core repulsion = 12695.509223 eV Total energy + Delta-G solvation = -2745.818852 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.72601 -40.09224 -37.49734 -36.08395 -34.12861 -32.67048 -30.22463 -27.82726 -27.24844 -24.34720 -23.69397 -22.51834 -21.12439 -19.10766 -18.48938 -18.06898 -17.87269 -16.88248 -16.43338 -15.97505 -15.28143 -15.05189 -14.85995 -14.27510 -13.89010 -13.70855 -13.55035 -13.50328 -13.05160 -12.83400 -12.67488 -12.57107 -12.51271 -12.17055 -12.04190 -11.70719 -11.57362 -11.21079 -10.63237 -9.93807 -9.12961 -8.18506 -6.28479 0.89213 1.45381 1.46970 1.59613 1.62573 2.44029 2.70024 3.16047 3.34733 3.66892 3.96976 3.99763 4.07433 4.18211 4.25218 4.32319 4.46425 4.56119 4.64725 4.81479 4.89821 4.97129 5.09694 5.18945 5.32568 5.36617 5.66372 6.05084 6.39649 6.53078 6.71955 6.93436 7.07787 7.42455 8.92848 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.060227 B = 0.004249 C = 0.004101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.799570 B = 6588.292314 C = 6826.184607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.071 3.929 3 O -0.374 6.374 4 C 0.667 3.333 5 O -0.611 6.611 6 N -0.631 5.631 7 C 0.142 3.858 8 C 0.059 3.941 9 N -0.668 5.668 10 C 0.207 3.793 11 C -0.533 4.533 12 H 0.067 0.933 13 C 0.002 3.998 14 N -0.933 5.933 15 Si 0.969 3.031 16 H -0.262 1.262 17 H -0.282 1.282 18 H -0.280 1.280 19 C 0.088 3.912 20 H 0.068 0.932 21 H 0.066 0.934 22 H 0.107 0.893 23 H 0.067 0.933 24 H 0.069 0.931 25 H 0.086 0.914 26 H 0.106 0.894 27 H 0.096 0.904 28 H 0.346 0.654 29 H 0.003 0.997 30 H -0.027 1.027 31 H 0.264 0.736 32 H 0.106 0.894 33 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.696 -13.844 5.635 16.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.003 4.003 3 O -0.288 6.288 4 C 0.423 3.577 5 O -0.503 6.503 6 N -0.374 5.374 7 C 0.021 3.979 8 C -0.053 4.053 9 N -0.299 5.299 10 C 0.079 3.921 11 C -0.571 4.571 12 H 0.086 0.914 13 C -0.196 4.196 14 N -0.574 5.574 15 Si 0.794 3.206 16 H -0.185 1.185 17 H -0.208 1.208 18 H -0.206 1.206 19 C -0.036 4.036 20 H 0.087 0.913 21 H 0.085 0.915 22 H 0.126 0.874 23 H 0.086 0.914 24 H 0.088 0.912 25 H 0.104 0.896 26 H 0.124 0.876 27 H 0.114 0.886 28 H 0.165 0.835 29 H 0.021 0.979 30 H -0.009 1.009 31 H 0.073 0.927 32 H 0.124 0.876 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.008 -14.395 5.305 16.866 hybrid contribution -0.594 0.811 -0.009 1.005 sum -7.602 -13.583 5.296 16.442 Atomic orbital electron populations 1.21847 0.89973 1.04661 1.03631 1.23279 0.96746 0.77569 1.02658 1.86280 1.20923 1.34864 1.86722 1.17663 0.81432 0.82660 0.75980 1.90942 1.60898 1.39891 1.58588 1.48679 1.11590 1.02308 1.74786 1.23451 0.82531 0.89355 1.02520 1.23454 0.92317 0.90098 0.99442 1.60363 1.60816 1.01923 1.06807 1.19277 0.93263 0.88288 0.91247 1.21596 1.39084 0.93499 1.02932 0.91440 1.25885 0.95637 1.02844 0.95232 1.70081 1.46305 1.28597 1.12395 0.85338 0.77880 0.78625 0.78761 1.18547 1.20846 1.20558 1.24233 0.99164 0.77837 1.02387 0.91298 0.91491 0.87429 0.91445 0.91226 0.89575 0.87577 0.88605 0.83468 0.97854 1.00933 0.92729 0.87563 0.89382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.93 10.29 71.98 0.74 -1.19 16 2 C 0.07 1.48 6.19 71.98 0.45 1.93 16 3 O -0.37 -10.42 10.21 -55.49 -0.57 -10.99 16 4 C 0.67 21.63 8.92 129.79 1.16 22.78 16 5 O -0.61 -22.96 16.86 19.80 0.33 -22.63 16 6 N -0.63 -18.69 3.61 -966.91 -3.49 -22.18 16 7 C 0.14 3.99 8.64 86.48 0.75 4.73 16 8 C 0.06 1.84 4.35 46.66 0.20 2.04 16 9 N -0.67 -25.04 6.61 -500.88 -3.31 -28.35 16 10 C 0.21 10.14 5.30 85.56 0.45 10.59 16 11 C -0.53 -28.54 9.32 25.60 0.24 -28.30 16 12 H 0.07 3.49 7.81 -2.91 -0.02 3.47 16 13 C 0.00 0.13 5.46 84.65 0.46 0.59 16 14 N -0.93 -54.35 13.29 21.45 0.28 -54.06 16 15 Si 0.97 42.67 29.54 68.60 2.03 44.70 16 16 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 17 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 18 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 19 C 0.09 2.33 8.52 86.43 0.74 3.07 16 20 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 21 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 22 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 23 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 26 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 27 H 0.10 3.20 7.88 -2.39 -0.02 3.19 16 28 H 0.35 11.81 8.20 -89.69 -0.74 11.07 16 29 H 0.00 0.18 8.13 -2.39 -0.02 0.16 16 30 H -0.03 -1.41 8.14 -2.39 -0.02 -1.43 16 31 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 32 H 0.11 2.47 7.82 -2.39 -0.02 2.46 16 33 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -65.96 289.84 0.82 -65.14 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: 0.36 Total: 12.13 kcal Atomic # 6 Polarization: 11.06 SS G_CDS: 5.18 Total: 16.25 kcal Atomic # 7 Polarization: -98.08 SS G_CDS: -6.52 Total: -104.60 kcal Atomic # 8 Polarization: -33.38 SS G_CDS: -0.23 Total: -33.62 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -65.96 0.82 -65.14 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259986091.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.829 kcal (2) G-P(sol) polarization free energy of solvation -65.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds