Wall clock time and date at job start Mon Mar 30 2020 02:58:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46952 * 111.00323 * 2 1 4 4 H 1.08994 * 109.49064 * 303.17959 * 3 2 1 5 5 C 1.50706 * 109.48616 * 63.22297 * 3 2 1 6 6 H 1.08000 * 119.99702 * 359.97438 * 5 3 2 7 7 C 1.37879 * 119.99847 * 180.02562 * 5 3 2 8 8 N 1.31513 * 120.00041 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99553 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47163 * 90.00075 * 9 7 5 11 11 H 1.48511 * 109.46834 * 209.99837 * 9 7 5 12 12 H 1.48497 * 109.47542 * 329.99880 * 9 7 5 13 13 C 1.53048 * 109.36623 * 183.18520 * 3 2 1 14 14 N 1.46953 * 109.36814 * 301.60355 * 13 3 2 15 15 C 1.46955 * 110.88054 * 59.31906 * 14 13 3 16 16 C 1.46963 * 111.00017 * 123.80380 * 2 1 3 17 17 H 1.08994 * 109.48525 * 296.77578 * 16 2 1 18 18 C 1.53000 * 109.48607 * 56.84176 * 16 2 1 19 19 C 1.50700 * 109.46928 * 185.97729 * 18 16 2 20 20 O 1.20826 * 120.00108 * 6.24377 * 19 18 16 21 21 O 1.34230 * 120.00556 * 186.24097 * 19 18 16 22 22 H 1.08995 * 109.47211 * 52.84391 * 1 2 3 23 23 H 1.08999 * 109.47000 * 292.84531 * 1 2 3 24 24 H 1.09005 * 109.47155 * 172.84440 * 1 2 3 25 25 H 0.96994 * 119.99664 * 180.02562 * 8 7 5 26 26 H 1.09005 * 109.48475 * 61.57121 * 13 3 2 27 27 H 1.09004 * 109.49243 * 181.60651 * 13 3 2 28 28 H 1.00903 * 111.00274 * 183.18367 * 14 13 3 29 29 H 1.09003 * 109.49100 * 60.64706 * 15 14 13 30 30 H 1.09003 * 109.49018 * 180.69085 * 15 14 13 31 31 H 1.08998 * 109.47438 * 305.97334 * 18 16 2 32 32 H 1.09000 * 109.47361 * 65.98140 * 18 16 2 33 33 H 0.96692 * 117.00502 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 1 1.6011 1.9129 -0.8600 5 6 1.5783 2.0706 1.2684 6 1 0.9812 1.5483 2.0012 7 6 1.9580 3.3770 1.4927 8 7 2.6839 4.0134 0.5996 9 14 1.4412 4.2428 3.0653 10 1 2.4718 4.0247 4.1120 11 1 1.2997 5.6981 2.8055 12 1 0.1415 3.6939 3.5284 13 6 3.5235 1.3290 -0.0802 14 7 4.0501 0.5657 1.0598 15 6 3.5234 -0.8062 1.0597 16 6 1.9957 -0.7633 1.1401 17 1 1.6938 -0.2822 2.0703 18 6 1.4421 -2.1891 1.0991 19 6 1.8628 -2.9272 2.3438 20 8 2.4388 -2.3400 3.2288 21 8 1.5976 -4.2370 2.4694 22 1 -0.3633 0.6207 -0.8190 23 1 -0.3633 0.3990 0.9470 24 1 -0.3634 -1.0197 -0.1280 25 1 2.9512 4.9323 0.7577 26 1 3.8253 0.8478 -1.0106 27 1 3.9179 2.3447 -0.0516 28 1 5.0591 0.5656 1.0598 29 1 3.8253 -1.3116 0.1423 30 1 3.9181 -1.3473 1.9197 31 1 0.3538 -2.1550 1.0474 32 1 1.8316 -2.7051 0.2216 33 1 1.8865 -4.6672 3.2858 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260036262.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:53 Heat of formation + Delta-G solvation = -74.036777 kcal Electronic energy + Delta-G solvation = -16974.429195 eV Core-core repulsion = 14228.390508 eV Total energy + Delta-G solvation = -2746.038688 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.20698 -38.26696 -35.95522 -33.58186 -33.03364 -31.20265 -27.67121 -26.52212 -24.78541 -22.58152 -22.17329 -20.27830 -18.72094 -17.87377 -16.42751 -15.92431 -15.73558 -15.44689 -14.64289 -14.02672 -13.74737 -13.37780 -13.10815 -12.78690 -12.43031 -12.29717 -11.72860 -11.41501 -11.13005 -11.00193 -10.86234 -10.77498 -10.49405 -10.37603 -9.96985 -9.78797 -9.51806 -9.35042 -8.30873 -7.35198 -7.12705 -5.90402 -3.97099 2.41363 3.19985 3.37408 3.43321 3.46533 4.51795 5.01552 5.04768 5.28418 5.39530 5.49278 5.67654 5.87169 6.02982 6.07619 6.14738 6.37700 6.46146 6.61739 6.68287 6.75377 6.88313 6.99223 7.21793 7.63823 7.89618 8.03577 8.06586 8.13218 8.20127 8.45386 8.55454 9.02420 9.67790 11.12472 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.030178 B = 0.009172 C = 0.008729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.617374 B = 3051.911700 C = 3206.990461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.541 5.541 3 C 0.213 3.787 4 H 0.045 0.955 5 C -0.511 4.511 6 H 0.053 0.947 7 C 0.071 3.929 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.070 3.930 14 N -0.666 5.666 15 C 0.071 3.929 16 C 0.102 3.898 17 H 0.070 0.930 18 C -0.112 4.112 19 C 0.475 3.525 20 O -0.504 6.504 21 O -0.524 6.524 22 H 0.060 0.940 23 H 0.030 0.970 24 H 0.046 0.954 25 H 0.259 0.741 26 H -0.010 1.010 27 H 0.107 0.893 28 H 0.321 0.679 29 H 0.014 0.986 30 H 0.068 0.932 31 H 0.107 0.893 32 H 0.104 0.896 33 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.297 -11.970 -0.084 12.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.266 5.266 3 C 0.106 3.894 4 H 0.063 0.937 5 C -0.550 4.550 6 H 0.071 0.929 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.204 1.204 13 C -0.059 4.059 14 N -0.295 5.295 15 C -0.059 4.059 16 C -0.008 4.008 17 H 0.088 0.912 18 C -0.151 4.151 19 C 0.317 3.683 20 O -0.391 6.391 21 O -0.336 6.336 22 H 0.079 0.921 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.008 0.992 27 H 0.125 0.875 28 H 0.137 0.863 29 H 0.032 0.968 30 H 0.086 0.914 31 H 0.125 0.875 32 H 0.122 0.878 33 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -1.506 -11.397 -0.244 11.498 hybrid contribution 0.193 0.233 1.480 1.510 sum -1.313 -11.164 1.236 11.309 Atomic orbital electron populations 1.22209 0.89399 0.99177 1.00999 1.62622 1.06645 1.17450 1.39893 1.19385 0.90728 0.82300 0.96976 0.93687 1.21382 1.32231 0.97106 1.04314 0.92887 1.24767 0.94803 0.97306 0.96126 1.69800 1.37546 1.11550 1.34594 0.86640 0.78809 0.78423 0.84295 1.20672 1.21526 1.20360 1.22179 0.98020 0.98815 0.86934 1.60314 1.10475 1.11741 1.46969 1.21928 0.94317 0.91192 0.98458 1.21257 0.94518 0.89253 0.95732 0.91179 1.21582 1.03709 0.96595 0.93177 1.23720 0.75536 0.79727 0.89307 1.90752 1.38295 1.67973 1.42030 1.84560 1.76924 1.25419 1.46733 0.92139 0.95102 0.93582 0.93079 0.99199 0.87474 0.86281 0.96768 0.91351 0.87520 0.87782 0.73798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.57 8.65 60.06 0.52 1.09 16 2 N -0.54 -11.39 4.73 -228.15 -1.08 -12.47 16 3 C 0.21 5.28 2.36 -68.81 -0.16 5.11 16 4 H 0.05 1.21 8.10 -51.93 -0.42 0.79 16 5 C -0.51 -13.86 6.78 -34.44 -0.23 -14.09 16 6 H 0.05 1.48 5.82 -52.49 -0.31 1.18 16 7 C 0.07 1.97 5.30 -17.82 -0.09 1.87 16 8 N -0.90 -25.27 11.32 55.43 0.63 -24.64 16 9 Si 0.89 22.02 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.07 1.68 5.95 -3.77 -0.02 1.65 16 14 N -0.67 -14.84 6.53 -113.64 -0.74 -15.58 16 15 C 0.07 1.42 5.74 -3.77 -0.02 1.40 16 16 C 0.10 2.02 1.37 -67.65 -0.09 1.93 16 17 H 0.07 1.66 6.21 -51.93 -0.32 1.34 16 18 C -0.11 -1.70 5.12 -27.88 -0.14 -1.84 16 19 C 0.48 7.09 7.95 36.01 0.29 7.37 16 20 O -0.50 -9.29 15.04 -18.75 -0.28 -9.57 16 21 O -0.52 -5.91 13.42 -39.26 -0.53 -6.44 16 22 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 23 H 0.03 0.62 6.90 -51.93 -0.36 0.26 16 24 H 0.05 0.70 6.32 -51.93 -0.33 0.37 16 25 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 26 H -0.01 -0.23 8.14 -51.93 -0.42 -0.65 16 27 H 0.11 2.84 6.05 -51.93 -0.31 2.52 16 28 H 0.32 6.37 8.90 -39.29 -0.35 6.02 16 29 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 1.34 6.32 -51.93 -0.33 1.01 16 31 H 0.11 1.47 6.10 -51.93 -0.32 1.15 16 32 H 0.10 1.42 8.14 -51.93 -0.42 0.99 16 33 H 0.40 2.80 9.10 45.56 0.41 3.22 16 LS Contribution 261.77 15.07 3.94 3.94 Total: -1.00 -31.09 261.77 -6.49 -37.58 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -3.45 Total: 5.69 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: 0.04 Total: 4.50 kcal Atomic # 7 Polarization: -51.50 SS G_CDS: -1.19 Total: -52.70 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -0.81 Total: -16.01 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -31.09 -6.49 -37.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260036262.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.458 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds