Wall clock time and date at job start Mon Mar 30 2020 02:58:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46952 * 111.00323 * 2 1 4 4 H 1.08994 * 109.49064 * 303.17959 * 3 2 1 5 5 C 1.50706 * 109.48616 * 63.22297 * 3 2 1 6 6 H 1.08000 * 119.99702 * 359.97438 * 5 3 2 7 7 C 1.37879 * 119.99847 * 180.02562 * 5 3 2 8 8 N 1.31513 * 120.00041 * 0.02562 * 7 5 3 9 9 Si 1.86801 * 119.99553 * 180.02562 * 7 5 3 10 10 H 1.48500 * 109.47163 * 90.00075 * 9 7 5 11 11 H 1.48511 * 109.46834 * 209.99837 * 9 7 5 12 12 H 1.48497 * 109.47542 * 329.99880 * 9 7 5 13 13 C 1.53048 * 109.36623 * 183.18520 * 3 2 1 14 14 N 1.46953 * 109.36814 * 301.60355 * 13 3 2 15 15 C 1.46955 * 110.88054 * 59.31906 * 14 13 3 16 16 C 1.46963 * 111.00017 * 123.80380 * 2 1 3 17 17 H 1.08994 * 109.48525 * 296.77578 * 16 2 1 18 18 C 1.53000 * 109.48607 * 56.84176 * 16 2 1 19 19 C 1.50700 * 109.46928 * 185.97729 * 18 16 2 20 20 O 1.20826 * 120.00108 * 6.24377 * 19 18 16 21 21 O 1.34230 * 120.00556 * 186.24097 * 19 18 16 22 22 H 1.08995 * 109.47211 * 52.84391 * 1 2 3 23 23 H 1.08999 * 109.47000 * 292.84531 * 1 2 3 24 24 H 1.09005 * 109.47155 * 172.84440 * 1 2 3 25 25 H 0.96994 * 119.99664 * 180.02562 * 8 7 5 26 26 H 1.09005 * 109.48475 * 61.57121 * 13 3 2 27 27 H 1.09004 * 109.49243 * 181.60651 * 13 3 2 28 28 H 1.00903 * 111.00274 * 183.18367 * 14 13 3 29 29 H 1.09003 * 109.49100 * 60.64706 * 15 14 13 30 30 H 1.09003 * 109.49018 * 180.69085 * 15 14 13 31 31 H 1.08998 * 109.47438 * 305.97334 * 18 16 2 32 32 H 1.09000 * 109.47361 * 65.98140 * 18 16 2 33 33 H 0.96692 * 117.00502 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 1 1.6011 1.9129 -0.8600 5 6 1.5783 2.0706 1.2684 6 1 0.9812 1.5483 2.0012 7 6 1.9580 3.3770 1.4927 8 7 2.6839 4.0134 0.5996 9 14 1.4412 4.2428 3.0653 10 1 2.4718 4.0247 4.1120 11 1 1.2997 5.6981 2.8055 12 1 0.1415 3.6939 3.5284 13 6 3.5235 1.3290 -0.0802 14 7 4.0501 0.5657 1.0598 15 6 3.5234 -0.8062 1.0597 16 6 1.9957 -0.7633 1.1401 17 1 1.6938 -0.2822 2.0703 18 6 1.4421 -2.1891 1.0991 19 6 1.8628 -2.9272 2.3438 20 8 2.4388 -2.3400 3.2288 21 8 1.5976 -4.2370 2.4694 22 1 -0.3633 0.6207 -0.8190 23 1 -0.3633 0.3990 0.9470 24 1 -0.3634 -1.0197 -0.1280 25 1 2.9512 4.9323 0.7577 26 1 3.8253 0.8478 -1.0106 27 1 3.9179 2.3447 -0.0516 28 1 5.0591 0.5656 1.0598 29 1 3.8253 -1.3116 0.1423 30 1 3.9181 -1.3473 1.9197 31 1 0.3538 -2.1550 1.0474 32 1 1.8316 -2.7051 0.2216 33 1 1.8865 -4.6672 3.2858 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260036262.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:58:52 Heat of formation + Delta-G solvation = -100.078148 kcal Electronic energy + Delta-G solvation = -16975.558434 eV Core-core repulsion = 14228.390508 eV Total energy + Delta-G solvation = -2747.167926 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.43662 -39.87263 -37.05928 -35.27917 -34.93846 -32.90549 -29.37203 -28.09739 -26.76509 -24.03662 -23.86730 -21.72778 -20.48537 -19.03881 -17.86398 -17.63711 -17.34610 -16.88995 -16.55518 -15.53399 -15.27952 -15.13028 -14.93737 -14.40700 -13.84283 -13.68154 -13.47126 -12.94239 -12.81481 -12.71322 -12.54250 -12.39803 -12.22328 -11.97005 -11.77554 -11.52678 -11.27249 -11.15170 -10.42298 -9.09991 -8.91965 -7.99255 -6.13119 1.27103 1.37411 1.41457 1.47223 2.12952 2.45566 3.24643 3.45922 3.52659 3.95468 4.04619 4.38694 4.51821 4.59055 4.62685 4.72967 4.79738 4.86691 4.94819 5.10669 5.17117 5.27597 5.31267 5.61168 5.68686 5.92252 6.13502 6.25861 6.42888 6.59852 6.83133 6.95078 7.07866 7.53385 8.99566 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.030178 B = 0.009172 C = 0.008729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.617374 B = 3051.911700 C = 3206.990461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.537 5.537 3 C 0.213 3.787 4 H 0.018 0.982 5 C -0.512 4.512 6 H 0.039 0.961 7 C 0.027 3.973 8 N -0.915 5.915 9 Si 0.940 3.060 10 H -0.286 1.286 11 H -0.282 1.282 12 H -0.276 1.276 13 C 0.081 3.919 14 N -0.685 5.685 15 C 0.074 3.926 16 C 0.103 3.897 17 H 0.027 0.973 18 C -0.105 4.105 19 C 0.487 3.513 20 O -0.546 6.546 21 O -0.509 6.509 22 H 0.057 0.943 23 H 0.010 0.990 24 H 0.090 0.910 25 H 0.259 0.741 26 H -0.001 1.001 27 H 0.079 0.921 28 H 0.334 0.666 29 H 0.032 0.968 30 H 0.073 0.927 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.833 -13.971 -0.088 14.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.261 5.261 3 C 0.105 3.895 4 H 0.035 0.965 5 C -0.552 4.552 6 H 0.057 0.943 7 C -0.172 4.172 8 N -0.555 5.555 9 Si 0.768 3.232 10 H -0.212 1.212 11 H -0.207 1.207 12 H -0.202 1.202 13 C -0.049 4.049 14 N -0.316 5.316 15 C -0.056 4.056 16 C -0.006 4.006 17 H 0.045 0.955 18 C -0.143 4.143 19 C 0.330 3.670 20 O -0.437 6.437 21 O -0.322 6.322 22 H 0.076 0.924 23 H 0.029 0.971 24 H 0.108 0.892 25 H 0.069 0.931 26 H 0.017 0.983 27 H 0.097 0.903 28 H 0.151 0.849 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -2.055 -13.443 -0.245 13.602 hybrid contribution 0.342 0.756 1.488 1.704 sum -1.713 -12.687 1.243 12.862 Atomic orbital electron populations 1.22301 0.87870 1.01767 0.99788 1.62587 1.08027 1.15170 1.40313 1.19181 0.91421 0.84151 0.94714 0.96463 1.21515 1.31660 0.97240 1.04753 0.94295 1.25380 0.95217 0.98119 0.98483 1.69907 1.38268 1.11655 1.35700 0.85843 0.78210 0.77860 0.81286 1.21241 1.20716 1.20160 1.21871 0.97333 0.97752 0.87961 1.60224 1.11599 1.13373 1.46357 1.21965 0.94385 0.89858 0.99400 1.21189 0.94674 0.91687 0.93044 0.95487 1.21440 1.04682 0.93669 0.94521 1.23515 0.74491 0.80532 0.88447 1.90758 1.40407 1.69111 1.43389 1.84488 1.76189 1.23395 1.48144 0.92429 0.97129 0.89180 0.93142 0.98302 0.90326 0.84931 0.94968 0.90917 0.85659 0.85185 0.71235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.11 8.65 127.69 1.10 2.21 16 2 N -0.54 -22.04 4.73 -875.72 -4.14 -26.18 16 3 C 0.21 10.69 2.36 44.18 0.10 10.79 16 4 H 0.02 0.97 8.10 -2.39 -0.02 0.95 16 5 C -0.51 -28.26 6.78 25.60 0.17 -28.09 16 6 H 0.04 2.23 5.82 -2.91 -0.02 2.21 16 7 C 0.03 1.51 5.30 84.66 0.45 1.95 16 8 N -0.91 -52.56 11.32 21.45 0.24 -52.32 16 9 Si 0.94 45.72 29.54 68.60 2.03 47.74 16 10 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.54 16 12 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 13 C 0.08 3.90 5.95 86.31 0.51 4.41 16 14 N -0.69 -30.37 6.53 -513.43 -3.35 -33.72 16 15 C 0.07 2.82 5.74 86.31 0.50 3.32 16 16 C 0.10 3.97 1.37 44.92 0.06 4.04 16 17 H 0.03 1.29 6.21 -2.39 -0.01 1.27 16 18 C -0.11 -2.84 5.12 29.85 0.15 -2.69 16 19 C 0.49 13.14 7.95 71.24 0.57 13.71 16 20 O -0.55 -19.38 15.04 21.96 0.33 -19.05 16 21 O -0.51 -9.49 13.42 -51.42 -0.69 -10.18 16 22 H 0.06 2.07 8.08 -2.39 -0.02 2.05 16 23 H 0.01 0.41 6.90 -2.39 -0.02 0.39 16 24 H 0.09 2.41 6.32 -2.38 -0.02 2.40 16 25 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 26 H 0.00 -0.05 8.14 -2.38 -0.02 -0.07 16 27 H 0.08 4.26 6.05 -2.39 -0.01 4.24 16 28 H 0.33 13.08 8.90 -89.69 -0.80 12.29 16 29 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 2.74 6.32 -2.39 -0.02 2.73 16 31 H 0.13 2.93 6.10 -2.39 -0.01 2.92 16 32 H 0.13 2.92 8.14 -2.39 -0.02 2.90 16 33 H 0.43 4.32 9.10 -74.06 -0.67 3.64 16 Total: -1.00 -67.62 261.77 -2.29 -69.91 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -0.33 Total: 14.15 kcal Atomic # 6 Polarization: 6.03 SS G_CDS: 3.62 Total: 9.65 kcal Atomic # 7 Polarization: -104.97 SS G_CDS: -7.25 Total: -112.23 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.36 Total: -29.23 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -67.62 -2.29 -69.91 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260036262.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.169 kcal (2) G-P(sol) polarization free energy of solvation -67.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds