Wall clock time and date at job start Mon Mar 30 2020 03:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 120.00034 * 2 1 4 4 H 1.48498 * 109.46796 * 90.00461 * 3 2 1 5 5 H 1.48502 * 109.47113 * 210.00118 * 3 2 1 6 6 H 1.48496 * 109.47089 * 330.00250 * 3 2 1 7 7 C 1.37875 * 120.00056 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00478 * 173.00611 * 7 2 1 9 9 C 1.50703 * 119.99932 * 353.00590 * 7 2 1 10 10 C 1.52997 * 109.50370 * 62.03285 * 9 7 2 11 11 N 1.46904 * 109.47134 * 54.52469 * 10 9 7 12 12 C 1.53117 * 109.50420 * 182.11648 * 9 7 2 13 13 C 1.53123 * 109.16384 * 62.28171 * 12 9 7 14 14 C 1.53036 * 109.27626 * 57.65534 * 13 12 9 15 15 N 1.46850 * 109.52608 * 300.82383 * 14 13 12 16 16 C 1.46901 * 110.99837 * 185.84126 * 15 14 13 17 17 C 1.52997 * 109.47121 * 66.04504 * 16 15 14 18 18 O 1.42897 * 109.47484 * 64.99954 * 17 16 15 19 19 C 1.46846 * 111.19878 * 61.73852 * 15 14 13 20 20 H 0.97003 * 120.00143 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.46713 * 174.52441 * 10 9 7 22 22 H 1.08992 * 109.47196 * 294.52462 * 10 9 7 23 23 H 1.00902 * 110.99478 * 56.04153 * 11 10 9 24 24 H 1.00898 * 110.99742 * 179.97438 * 11 10 9 25 25 H 1.08999 * 109.52505 * 182.19228 * 12 9 7 26 26 H 1.08999 * 109.52253 * 302.38060 * 12 9 7 27 27 H 1.08996 * 109.50405 * 177.59438 * 13 12 9 28 28 H 1.08998 * 109.50293 * 297.67392 * 13 12 9 29 29 H 1.09006 * 109.46305 * 60.83841 * 14 13 12 30 30 H 1.08998 * 109.46276 * 180.81401 * 14 13 12 31 31 H 1.09004 * 109.46638 * 186.04520 * 16 15 14 32 32 H 1.08999 * 109.47165 * 306.03676 * 16 15 14 33 33 H 1.09000 * 109.46859 * 184.99723 * 17 16 15 34 34 H 1.08994 * 109.46901 * 304.99380 * 17 16 15 35 35 H 0.96701 * 113.99953 * 179.97438 * 18 17 16 36 36 H 1.09000 * 109.46101 * 178.24261 * 19 15 14 37 37 H 1.09003 * 109.46153 * 58.27990 * 19 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0463 1.4001 5 1 3.5467 1.4402 -0.7001 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0785 -1.1975 -0.1144 9 6 1.2594 -2.4944 0.1578 10 6 0.2890 -2.6727 -1.0115 11 7 1.0232 -2.5591 -2.2788 12 6 2.2567 -3.6561 0.1763 13 6 3.1863 -3.5013 1.3832 14 6 2.3490 -3.4562 2.6633 15 7 1.4114 -2.3279 2.5971 16 6 0.6876 -2.1697 3.8655 17 6 1.6697 -1.7628 4.9659 18 8 2.2051 -0.4708 4.6726 19 6 0.4779 -2.4784 1.4735 20 1 -0.4850 0.8401 0.0004 21 1 -0.1783 -3.6555 -0.9491 22 1 -0.4797 -1.9013 -0.9666 23 1 1.7831 -3.2217 -2.3170 24 1 0.4038 -2.6737 -3.0670 25 1 1.7158 -4.5994 0.2517 26 1 2.8457 -3.6451 -0.7408 27 1 3.8711 -4.3482 1.4260 28 1 3.7561 -2.5771 1.2875 29 1 1.7906 -4.3868 2.7651 30 1 3.0068 -3.3316 3.5234 31 1 -0.0745 -1.3982 3.7551 32 1 0.2127 -3.1137 4.1330 33 1 1.1499 -1.7318 5.9235 34 1 2.4805 -2.4894 5.0159 35 1 2.8366 -0.1483 5.3301 36 1 -0.2231 -1.6438 1.4695 37 1 -0.0717 -3.4136 1.5809 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260191276.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:37:57 Heat of formation + Delta-G solvation = -63.516051 kcal Electronic energy + Delta-G solvation = -17596.673873 eV Core-core repulsion = 14986.924493 eV Total energy + Delta-G solvation = -2609.749380 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.21539 -37.83975 -36.06121 -33.81995 -33.37565 -30.98327 -29.45328 -26.75174 -25.69510 -24.19212 -23.03144 -21.19929 -20.31187 -18.29949 -17.41569 -17.06066 -16.60343 -16.35195 -15.60398 -15.16913 -14.99246 -14.74685 -14.61064 -14.12130 -13.86601 -13.45498 -13.18273 -13.02869 -12.67191 -12.57527 -12.42357 -12.13813 -11.93436 -11.75145 -11.66270 -10.85662 -10.73325 -10.63323 -10.47593 -10.09385 -8.99650 -8.69337 -7.73096 -5.71801 1.48381 1.54244 1.56268 2.67904 3.26813 3.57771 3.58732 4.17198 4.22999 4.27179 4.32398 4.44662 4.47780 4.59614 4.70176 4.72769 4.85504 4.89827 4.93051 4.99237 5.07588 5.12658 5.35082 5.39029 5.47501 5.62869 5.87578 5.91492 6.33851 6.44700 6.66308 6.77144 6.88186 7.06513 7.12283 7.20614 7.87766 9.29365 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.020085 B = 0.014082 C = 0.010140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.771115 B = 1987.915375 C = 2760.578809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.035 3.965 3 Si 0.924 3.076 4 H -0.293 1.293 5 H -0.280 1.280 6 H -0.298 1.298 7 C -0.426 4.426 8 H 0.031 0.969 9 C 0.068 3.932 10 C 0.085 3.915 11 N -0.831 5.831 12 C -0.103 4.103 13 C -0.102 4.102 14 C 0.062 3.938 15 N -0.523 5.523 16 C 0.050 3.950 17 C 0.087 3.913 18 O -0.584 6.584 19 C 0.084 3.916 20 H 0.244 0.756 21 H -0.019 1.019 22 H 0.069 0.931 23 H 0.329 0.671 24 H 0.328 0.672 25 H 0.039 0.961 26 H 0.051 0.949 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.023 0.977 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.385 0.615 36 H 0.066 0.934 37 H -0.014 1.014 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.071 -8.063 7.390 11.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.161 4.161 3 Si 0.755 3.245 4 H -0.220 1.220 5 H -0.205 1.205 6 H -0.225 1.225 7 C -0.465 4.465 8 H 0.050 0.950 9 C 0.067 3.933 10 C -0.047 4.047 11 N -0.360 5.360 12 C -0.141 4.141 13 C -0.140 4.140 14 C -0.066 4.066 15 N -0.247 5.247 16 C -0.078 4.078 17 C 0.010 3.990 18 O -0.391 6.391 19 C -0.044 4.044 20 H 0.054 0.946 21 H -0.001 1.001 22 H 0.087 0.913 23 H 0.142 0.858 24 H 0.139 0.861 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.070 0.930 29 H 0.041 0.959 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.075 0.925 35 H 0.233 0.767 36 H 0.084 0.916 37 H 0.004 0.996 Dipole moment (debyes) X Y Z Total from point charges 2.992 -6.821 7.029 10.241 hybrid contribution -0.304 -0.403 0.328 0.602 sum 2.688 -7.224 7.357 10.655 Atomic orbital electron populations 1.69842 1.06227 1.24908 1.54747 1.25031 0.95004 0.99942 0.96081 0.86101 0.78952 0.82795 0.76657 1.22044 1.20514 1.22507 1.20567 0.91464 0.90441 1.44006 0.95041 1.18247 0.91956 0.93351 0.89718 1.21695 0.97127 0.95154 0.90679 1.58448 1.14430 1.59727 1.03372 1.21583 0.97789 0.96893 0.97832 1.21421 0.97482 1.00995 0.94114 1.22082 0.95207 0.90684 0.98584 1.61628 1.18860 1.42241 1.02018 1.22151 0.95980 0.99195 0.90465 1.22242 0.96085 0.84734 0.95986 1.86724 1.64199 1.34778 1.53379 1.21905 0.94033 0.96437 0.92039 0.94647 1.00106 0.91295 0.85765 0.86072 0.94252 0.92994 0.90828 0.93009 0.95927 0.90436 0.93178 0.93124 0.91439 0.92528 0.76665 0.91571 0.99643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.93 9.48 21.45 0.20 -52.73 16 2 C 0.04 2.00 5.12 84.65 0.43 2.43 16 3 Si 0.92 47.73 29.54 68.60 2.03 49.75 16 4 H -0.29 -15.49 7.11 99.48 0.71 -14.78 16 5 H -0.28 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 7 C -0.43 -23.02 6.34 25.60 0.16 -22.85 16 8 H 0.03 1.77 6.95 -2.91 -0.02 1.75 16 9 C 0.07 3.21 0.33 -52.87 -0.02 3.19 16 10 C 0.08 3.95 5.47 86.30 0.47 4.42 16 11 N -0.83 -34.85 9.04 -186.72 -1.69 -36.54 16 12 C -0.10 -4.09 4.47 30.67 0.14 -3.95 16 13 C -0.10 -3.73 5.83 30.65 0.18 -3.55 16 14 C 0.06 2.18 5.30 86.32 0.46 2.64 16 15 N -0.52 -22.06 4.21 -896.34 -3.77 -25.83 16 16 C 0.05 1.81 5.35 86.30 0.46 2.27 16 17 C 0.09 2.51 7.11 71.98 0.51 3.02 16 18 O -0.58 -20.16 13.61 -148.98 -2.03 -22.19 16 19 C 0.08 3.97 3.96 86.33 0.34 4.31 16 20 H 0.24 14.06 8.31 -92.71 -0.77 13.29 16 21 H -0.02 -0.82 8.14 -2.39 -0.02 -0.84 16 22 H 0.07 3.70 6.16 -2.39 -0.01 3.68 16 23 H 0.33 12.49 7.33 -89.69 -0.66 11.83 16 24 H 0.33 12.01 9.08 -89.70 -0.81 11.20 16 25 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 26 H 0.05 2.02 6.81 -2.39 -0.02 2.00 16 27 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 28 H 0.05 2.17 6.87 -2.39 -0.02 2.15 16 29 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.08 2.39 6.13 -2.39 -0.01 2.37 16 31 H 0.05 2.04 7.98 -2.38 -0.02 2.03 16 32 H 0.05 1.58 8.12 -2.39 -0.02 1.56 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.43 6.23 -2.39 -0.01 1.42 16 35 H 0.39 8.81 9.12 -74.06 -0.68 8.13 16 36 H 0.07 3.61 6.05 -2.39 -0.01 3.60 16 37 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 Total: -1.00 -66.05 280.45 -3.18 -69.24 By element: Atomic # 1 Polarization: 27.44 SS G_CDS: -1.06 Total: 26.37 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: 3.14 Total: -8.08 kcal Atomic # 7 Polarization: -109.84 SS G_CDS: -5.26 Total: -115.09 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -2.03 Total: -22.19 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.75 kcal Total: -66.05 -3.18 -69.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260191276.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.720 kcal (2) G-P(sol) polarization free energy of solvation -66.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.183 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds