Wall clock time and date at job start Mon Mar 30 2020 02:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47171 * 2 1 4 4 C 1.52998 * 109.47195 * 239.99788 * 2 1 3 5 5 C 1.50710 * 109.46888 * 64.99995 * 4 2 1 6 6 H 1.07996 * 119.99476 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99835 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00071 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99866 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47252 * 59.99957 * 9 7 5 11 11 H 1.48505 * 109.47219 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47073 * 299.99714 * 9 7 5 13 13 C 1.53002 * 109.47142 * 120.00123 * 2 1 3 14 14 H 1.08998 * 109.97221 * 61.60517 * 13 2 1 15 15 C 1.51593 * 109.98616 * 182.97651 * 13 2 1 16 16 C 1.52984 * 109.41483 * 222.02193 * 15 13 2 17 17 C 1.53775 * 115.50799 * 318.18727 * 16 15 13 18 18 S 1.79965 * 113.13642 * 315.96670 * 17 16 15 19 19 C 1.83628 * 102.84264 * 86.70250 * 18 17 16 20 20 C 1.45389 * 109.69810 * 291.06868 * 19 18 17 21 21 H 1.08996 * 109.47238 * 306.66254 * 1 2 3 22 22 H 1.08999 * 109.47317 * 66.67027 * 1 2 3 23 23 H 1.09010 * 109.46835 * 186.66997 * 1 2 3 24 24 H 1.08998 * 109.47413 * 184.99515 * 4 2 1 25 25 H 1.08996 * 109.47381 * 305.00264 * 4 2 1 26 26 H 0.97003 * 119.99709 * 179.97438 * 8 7 5 27 27 H 1.09003 * 109.48244 * 342.00794 * 15 13 2 28 28 H 1.09005 * 109.48362 * 102.03701 * 15 13 2 29 29 H 1.09001 * 108.27131 * 196.61946 * 16 15 13 30 30 H 1.08997 * 108.12413 * 79.64276 * 16 15 13 31 31 H 1.09003 * 108.74960 * 195.02206 * 17 16 15 32 32 H 1.08998 * 108.65610 * 76.84567 * 17 16 15 33 33 H 1.09005 * 109.42951 * 171.00681 * 19 18 17 34 34 H 1.08993 * 109.39882 * 51.12174 * 19 18 17 35 35 H 1.08995 * 108.31099 * 303.21468 * 20 19 18 36 36 H 1.09002 * 108.30949 * 186.25299 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9741 -2.3756 7 6 1.9932 -0.4017 -3.7283 8 7 2.6773 -1.5182 -3.8510 9 14 1.4996 0.5634 -5.2496 10 1 2.0917 1.9237 -5.1865 11 1 1.9956 -0.1361 -6.4621 12 1 0.0196 0.6700 -5.3096 13 6 2.0400 -0.7213 1.2492 14 1 1.7048 -1.7584 1.2432 15 6 3.5541 -0.6643 1.2986 16 6 4.1001 -2.0245 1.7369 17 6 3.3322 -2.7093 2.8798 18 16 2.9047 -1.5844 4.2179 19 6 1.3067 -0.8734 3.6586 20 6 1.5291 -0.0132 2.5078 21 1 -0.3633 0.6136 0.8243 22 1 -0.3634 0.4070 -0.9436 23 1 -0.3633 -1.0208 0.1194 24 1 3.1263 -0.7994 -1.2056 25 1 1.6054 -1.7198 -1.2951 26 1 2.9245 -1.8411 -4.7317 27 1 3.9411 -0.4188 0.3096 28 1 3.8662 0.0994 2.0110 29 1 5.1351 -1.8919 2.0518 30 1 4.0902 -2.6884 0.8725 31 1 3.9471 -3.5145 3.2819 32 1 2.4150 -3.1379 2.4758 33 1 0.8663 -0.2903 4.4675 34 1 0.6282 -1.6805 3.3824 35 1 2.2525 0.7526 2.7875 36 1 0.5894 0.4826 2.2642 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260322510.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:51 Heat of formation + Delta-G solvation = -33.914040 kcal Electronic energy + Delta-G solvation = -14583.318335 eV Core-core repulsion = 12385.312715 eV Total energy + Delta-G solvation = -2198.005621 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.124 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.38618 -34.00097 -32.97132 -31.80287 -28.44654 -27.07773 -24.69249 -23.49604 -21.50522 -20.14078 -18.91043 -16.50561 -16.07911 -15.03711 -14.67428 -14.43197 -14.37092 -13.79268 -13.36783 -13.22325 -12.49114 -12.26870 -11.83922 -11.62095 -11.35782 -11.14259 -10.88926 -10.81990 -10.67444 -10.55835 -10.36794 -10.17475 -9.80488 -9.57330 -9.39644 -8.98453 -8.91725 -8.31311 -7.55545 -5.98300 -3.99316 1.88584 2.68718 3.33125 3.37885 3.40106 4.46583 4.82545 4.96894 5.11526 5.23902 5.32125 5.37144 5.41643 5.64655 5.70617 5.89041 5.95494 5.98741 6.14392 6.22347 6.25566 6.32364 6.42444 6.58093 6.64882 6.70042 6.79405 7.07595 7.13876 7.22769 7.71944 7.87254 8.02849 8.46220 9.07089 9.63950 11.12922 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.046447 B = 0.006505 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.697552 B = 4303.142655 C = 4703.398336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.079 4.079 3 H 0.056 0.944 4 C 0.028 3.972 5 C -0.516 4.516 6 H 0.054 0.946 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C -0.081 4.081 14 H 0.064 0.936 15 C -0.118 4.118 16 C -0.113 4.113 17 C -0.078 4.078 18 S -0.287 6.287 19 C -0.056 4.056 20 C -0.134 4.134 21 H 0.033 0.967 22 H 0.063 0.937 23 H 0.040 0.960 24 H 0.020 0.980 25 H 0.012 0.988 26 H 0.260 0.740 27 H 0.082 0.918 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.068 0.932 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.098 0.902 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.902 -0.141 13.097 13.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.097 4.097 3 H 0.075 0.925 4 C -0.008 4.008 5 C -0.554 4.554 6 H 0.073 0.927 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.099 4.099 14 H 0.082 0.918 15 C -0.156 4.156 16 C -0.153 4.153 17 C -0.226 4.226 18 S -0.061 6.061 19 C -0.204 4.204 20 C -0.172 4.172 21 H 0.052 0.948 22 H 0.082 0.918 23 H 0.060 0.940 24 H 0.039 0.961 25 H 0.031 0.969 26 H 0.069 0.931 27 H 0.100 0.900 28 H 0.081 0.919 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.113 0.887 32 H 0.099 0.901 33 H 0.116 0.884 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.258 -0.069 13.917 13.919 hybrid contribution -0.879 0.105 -2.044 2.228 sum -1.137 0.036 11.873 11.927 Atomic orbital electron populations 1.21810 0.96714 1.00089 1.00699 1.21216 0.94698 0.99172 0.94655 0.92540 1.19163 0.96286 0.95232 0.90165 1.21242 1.34672 1.08308 0.91166 0.92748 1.25004 0.95337 0.95069 0.99023 1.69952 1.38984 1.21221 1.23449 0.86722 0.78862 0.80180 0.82619 1.20307 1.21368 1.20335 1.21132 0.95238 0.99389 0.94149 0.91796 1.21712 0.95563 0.95982 1.02327 1.21742 0.99017 0.97873 0.96618 1.23284 1.03760 0.98823 0.96746 1.86586 1.30785 1.56993 1.31727 1.22265 0.94843 1.02000 1.01274 1.20803 1.02902 0.99172 0.94372 0.94806 0.91789 0.94044 0.96143 0.96928 0.93064 0.89952 0.91880 0.92435 0.91329 0.88741 0.90108 0.88382 0.90325 0.91357 0.90837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.68 37.16 0.32 -2.16 16 2 C -0.08 -1.55 1.83 -90.62 -0.17 -1.71 16 3 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 4 C 0.03 0.70 4.30 -27.88 -0.12 0.58 16 5 C -0.52 -14.21 8.31 -34.44 -0.29 -14.49 16 6 H 0.05 1.46 7.09 -52.49 -0.37 1.09 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 9 Si 0.89 21.54 29.54 -169.99 -5.02 16.52 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 C -0.08 -1.32 1.44 -91.24 -0.13 -1.45 16 14 H 0.06 1.08 6.24 -51.93 -0.32 0.76 16 15 C -0.12 -1.91 4.93 -27.45 -0.14 -2.05 16 16 C -0.11 -1.64 5.64 -26.34 -0.15 -1.78 16 17 C -0.08 -1.02 5.60 37.56 0.21 -0.81 16 18 S -0.29 -3.85 21.56 -107.50 -2.32 -6.17 16 19 C -0.06 -0.69 6.06 33.58 0.20 -0.48 16 20 C -0.13 -1.84 4.45 -30.22 -0.13 -1.97 16 21 H 0.03 0.52 6.28 -51.93 -0.33 0.19 16 22 H 0.06 1.29 6.78 -51.93 -0.35 0.93 16 23 H 0.04 0.74 8.14 -51.92 -0.42 0.31 16 24 H 0.02 0.54 6.16 -51.93 -0.32 0.22 16 25 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.08 1.53 5.83 -51.93 -0.30 1.23 16 28 H 0.06 0.97 6.84 -51.93 -0.36 0.62 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.09 1.10 8.14 -51.70 -0.42 0.68 16 32 H 0.08 1.06 7.06 -51.70 -0.36 0.70 16 33 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.95 6.99 -51.93 -0.36 0.59 16 36 H 0.07 0.99 5.58 -51.93 -0.29 0.70 16 LS Contribution 280.70 15.07 4.23 4.23 Total: -1.00 -28.65 280.70 -8.74 -37.39 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -5.89 Total: -1.22 kcal Atomic # 6 Polarization: -24.34 SS G_CDS: -0.48 Total: -24.83 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.92 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Atomic # 16 Polarization: -3.85 SS G_CDS: -2.32 Total: -6.17 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.65 -8.74 -37.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260322510.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.474 kcal (2) G-P(sol) polarization free energy of solvation -28.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds