Wall clock time and date at job start Mon Mar 30 2020 02:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47171 * 2 1 4 4 C 1.52998 * 109.47195 * 239.99788 * 2 1 3 5 5 C 1.50710 * 109.46888 * 64.99995 * 4 2 1 6 6 H 1.07996 * 119.99476 * 359.97438 * 5 4 2 7 7 C 1.37873 * 119.99835 * 179.97438 * 5 4 2 8 8 N 1.31516 * 120.00071 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99866 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47252 * 59.99957 * 9 7 5 11 11 H 1.48505 * 109.47219 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47073 * 299.99714 * 9 7 5 13 13 C 1.53002 * 109.47142 * 120.00123 * 2 1 3 14 14 H 1.08998 * 109.97221 * 61.60517 * 13 2 1 15 15 C 1.51593 * 109.98616 * 182.97651 * 13 2 1 16 16 C 1.52984 * 109.41483 * 222.02193 * 15 13 2 17 17 C 1.53775 * 115.50799 * 318.18727 * 16 15 13 18 18 S 1.79965 * 113.13642 * 315.96670 * 17 16 15 19 19 C 1.83628 * 102.84264 * 86.70250 * 18 17 16 20 20 C 1.45389 * 109.69810 * 291.06868 * 19 18 17 21 21 H 1.08996 * 109.47238 * 306.66254 * 1 2 3 22 22 H 1.08999 * 109.47317 * 66.67027 * 1 2 3 23 23 H 1.09010 * 109.46835 * 186.66997 * 1 2 3 24 24 H 1.08998 * 109.47413 * 184.99515 * 4 2 1 25 25 H 1.08996 * 109.47381 * 305.00264 * 4 2 1 26 26 H 0.97003 * 119.99709 * 179.97438 * 8 7 5 27 27 H 1.09003 * 109.48244 * 342.00794 * 15 13 2 28 28 H 1.09005 * 109.48362 * 102.03701 * 15 13 2 29 29 H 1.09001 * 108.27131 * 196.61946 * 16 15 13 30 30 H 1.08997 * 108.12413 * 79.64276 * 16 15 13 31 31 H 1.09003 * 108.74960 * 195.02206 * 17 16 15 32 32 H 1.08998 * 108.65610 * 76.84567 * 17 16 15 33 33 H 1.09005 * 109.42951 * 171.00681 * 19 18 17 34 34 H 1.08993 * 109.39882 * 51.12174 * 19 18 17 35 35 H 1.08995 * 108.31099 * 303.21468 * 20 19 18 36 36 H 1.09002 * 108.30949 * 186.25299 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0571 -2.4766 6 1 1.0799 0.9741 -2.3756 7 6 1.9932 -0.4017 -3.7283 8 7 2.6773 -1.5182 -3.8510 9 14 1.4996 0.5634 -5.2496 10 1 2.0917 1.9237 -5.1865 11 1 1.9956 -0.1361 -6.4621 12 1 0.0196 0.6700 -5.3096 13 6 2.0400 -0.7213 1.2492 14 1 1.7048 -1.7584 1.2432 15 6 3.5541 -0.6643 1.2986 16 6 4.1001 -2.0245 1.7369 17 6 3.3322 -2.7093 2.8798 18 16 2.9047 -1.5844 4.2179 19 6 1.3067 -0.8734 3.6586 20 6 1.5291 -0.0132 2.5078 21 1 -0.3633 0.6136 0.8243 22 1 -0.3634 0.4070 -0.9436 23 1 -0.3633 -1.0208 0.1194 24 1 3.1263 -0.7994 -1.2056 25 1 1.6054 -1.7198 -1.2951 26 1 2.9245 -1.8411 -4.7317 27 1 3.9411 -0.4188 0.3096 28 1 3.8662 0.0994 2.0110 29 1 5.1351 -1.8919 2.0518 30 1 4.0902 -2.6884 0.8725 31 1 3.9471 -3.5145 3.2819 32 1 2.4150 -3.1379 2.4758 33 1 0.8663 -0.2903 4.4675 34 1 0.6282 -1.6805 3.3824 35 1 2.2525 0.7526 2.7875 36 1 0.5894 0.4826 2.2642 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260322510.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:51 Heat of formation + Delta-G solvation = -48.181564 kcal Electronic energy + Delta-G solvation = -14583.937022 eV Core-core repulsion = 12385.312715 eV Total energy + Delta-G solvation = -2198.624307 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.124 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.75996 -35.73488 -34.30172 -33.51043 -29.74039 -28.95386 -25.99647 -25.29037 -22.75396 -21.58232 -20.43806 -18.49099 -17.30286 -16.59705 -16.13366 -15.80367 -15.60014 -15.26875 -14.60842 -14.53904 -14.22110 -13.73972 -13.34580 -13.24413 -12.80683 -12.78865 -12.55657 -12.33418 -12.24187 -11.93559 -11.77109 -11.69438 -11.42615 -11.18274 -10.85122 -10.67720 -10.50070 -10.39048 -8.60324 -8.16182 -6.24682 0.87992 1.39405 1.41531 1.49135 1.66598 2.42121 3.17046 3.69667 3.80035 3.95212 4.14203 4.14670 4.24973 4.40792 4.48734 4.61610 4.74941 4.77585 4.83160 4.89865 4.94901 5.03544 5.15120 5.24341 5.27157 5.30372 5.36360 5.46436 5.52606 5.57998 5.70065 5.93166 5.94370 6.32981 6.92264 7.43174 8.95182 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.046447 B = 0.006505 C = 0.005952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 602.697552 B = 4303.142655 C = 4703.398336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.072 4.072 3 H 0.051 0.949 4 C 0.036 3.964 5 C -0.531 4.531 6 H 0.059 0.941 7 C -0.001 4.001 8 N -0.934 5.934 9 Si 0.956 3.044 10 H -0.269 1.269 11 H -0.286 1.286 12 H -0.268 1.268 13 C -0.074 4.074 14 H 0.057 0.943 15 C -0.116 4.116 16 C -0.110 4.110 17 C -0.074 4.074 18 S -0.298 6.298 19 C -0.053 4.053 20 C -0.124 4.124 21 H 0.070 0.930 22 H 0.041 0.959 23 H 0.041 0.959 24 H -0.004 1.004 25 H -0.017 1.017 26 H 0.261 0.739 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.051 0.949 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.123 0.877 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.926 0.813 14.360 14.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 H 0.070 0.930 4 C -0.001 4.001 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.198 4.198 8 N -0.575 5.575 9 Si 0.781 3.219 10 H -0.194 1.194 11 H -0.211 1.211 12 H -0.193 1.193 13 C -0.093 4.093 14 H 0.075 0.925 15 C -0.153 4.153 16 C -0.150 4.150 17 C -0.222 4.222 18 S -0.072 6.072 19 C -0.200 4.200 20 C -0.163 4.163 21 H 0.089 0.911 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.015 0.985 25 H 0.001 0.999 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.097 0.903 33 H 0.141 0.859 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -1.290 0.895 15.193 15.274 hybrid contribution -0.532 -0.197 -2.433 2.498 sum -1.822 0.697 12.761 12.909 Atomic orbital electron populations 1.21744 0.95266 1.00767 1.00997 1.21062 0.95848 0.98363 0.93788 0.93032 1.19032 0.94670 0.94049 0.92360 1.21688 1.34288 1.08569 0.92362 0.92305 1.25905 0.95353 0.96064 1.02495 1.70093 1.40309 1.22946 1.24181 0.85634 0.78911 0.78853 0.78470 1.19357 1.21124 1.19282 1.20997 0.95223 0.98882 0.94174 0.92452 1.21643 0.95605 0.97320 1.00758 1.21688 0.99867 0.96667 0.96763 1.23231 1.03768 0.99049 0.96142 1.86656 1.31839 1.57132 1.31572 1.22317 0.94211 1.02177 1.01276 1.20668 1.03204 0.99073 0.93320 0.91147 0.94023 0.93958 0.98541 0.99909 0.93061 0.93240 0.90819 0.91522 0.93048 0.87146 0.90259 0.85865 0.89621 0.91195 0.89801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.61 8.68 71.98 0.62 -3.98 16 2 C -0.07 -2.83 1.83 -10.79 -0.02 -2.85 16 3 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 4 C 0.04 1.84 4.30 29.85 0.13 1.97 16 5 C -0.53 -29.82 8.31 25.60 0.21 -29.60 16 6 H 0.06 3.18 7.09 -2.91 -0.02 3.16 16 7 C 0.00 -0.06 5.46 84.65 0.46 0.41 16 8 N -0.93 -57.06 13.29 21.45 0.28 -56.77 16 9 Si 0.96 44.43 29.54 68.60 2.03 46.46 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 13 C -0.07 -2.37 1.44 -11.19 -0.02 -2.39 16 14 H 0.06 1.92 6.24 -2.39 -0.01 1.90 16 15 C -0.12 -3.75 4.93 30.13 0.15 -3.60 16 16 C -0.11 -3.18 5.64 30.85 0.17 -3.01 16 17 C -0.07 -1.83 5.60 72.24 0.40 -1.42 16 18 S -0.30 -7.27 21.56 -56.49 -1.22 -8.49 16 19 C -0.05 -1.11 6.06 69.66 0.42 -0.69 16 20 C -0.12 -3.06 4.45 28.34 0.13 -2.93 16 21 H 0.07 1.96 6.28 -2.39 -0.02 1.95 16 22 H 0.04 1.64 6.78 -2.39 -0.02 1.62 16 23 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 24 H 0.00 -0.20 6.16 -2.39 -0.01 -0.22 16 25 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 26 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 27 H 0.05 1.92 5.83 -2.39 -0.01 1.91 16 28 H 0.07 2.21 6.84 -2.38 -0.02 2.19 16 29 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.11 2.38 8.14 -2.53 -0.02 2.36 16 32 H 0.08 1.99 7.06 -2.54 -0.02 1.97 16 33 H 0.12 2.07 8.14 -2.38 -0.02 2.05 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.74 6.99 -2.39 -0.02 1.72 16 36 H 0.08 1.93 5.58 -2.39 -0.01 1.91 16 Total: -1.00 -62.21 280.70 4.79 -57.42 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: 1.03 Total: 9.49 kcal Atomic # 6 Polarization: -50.77 SS G_CDS: 2.67 Total: -48.10 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.28 Total: -56.77 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Atomic # 16 Polarization: -7.27 SS G_CDS: -1.22 Total: -8.49 kcal Total: -62.21 4.79 -57.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260322510.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.236 kcal (2) G-P(sol) polarization free energy of solvation -62.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds