Wall clock time and date at job start Mon Mar 30 2020 03:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34782 * 119.99675 * 2 1 4 4 O 1.21582 * 120.00071 * 4.97931 * 3 2 1 5 5 N 1.34774 * 119.99915 * 184.98301 * 3 2 1 6 6 C 1.46926 * 120.63157 * 354.78914 * 5 3 2 7 7 C 1.53192 * 108.77827 * 233.59236 * 6 5 3 8 8 C 1.53040 * 109.30783 * 305.36140 * 7 6 5 9 9 C 1.53354 * 109.60905 * 61.37881 * 8 7 6 10 10 H 1.09002 * 109.47645 * 58.54374 * 9 8 7 11 11 O 1.42894 * 109.68523 * 178.74644 * 9 8 7 12 12 C 1.34929 * 116.99857 * 209.75085 * 11 9 8 13 13 H 1.07999 * 120.00111 * 359.97438 * 12 11 9 14 14 C 1.38638 * 120.00091 * 180.02562 * 12 11 9 15 15 N 1.31582 * 120.00011 * 359.97438 * 14 12 11 16 16 Si 1.86795 * 120.00055 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47126 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47394 * 119.99691 * 16 14 12 19 19 H 1.48502 * 109.47201 * 239.99968 * 16 14 12 20 20 C 1.46926 * 120.63121 * 174.77166 * 5 3 2 21 21 H 1.09001 * 109.47143 * 180.02562 * 1 2 3 22 22 H 1.09007 * 109.47228 * 300.00071 * 1 2 3 23 23 H 1.08998 * 109.47443 * 60.00096 * 1 2 3 24 24 H 0.96993 * 120.00686 * 179.97438 * 2 1 3 25 25 H 1.09010 * 109.58451 * 353.37613 * 6 5 3 26 26 H 1.08999 * 109.58904 * 113.65827 * 6 5 3 27 27 H 1.08993 * 109.49991 * 65.31649 * 7 6 5 28 28 H 1.09004 * 109.49926 * 185.38378 * 7 6 5 29 29 H 1.08999 * 109.46034 * 181.38490 * 8 7 6 30 30 H 1.08994 * 109.46433 * 301.35680 * 8 7 6 31 31 H 0.97000 * 120.00504 * 180.02562 * 15 14 12 32 32 H 1.08999 * 109.58363 * 246.19988 * 20 5 3 33 33 H 1.09002 * 109.58625 * 6.48116 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5343 2.2182 0.0914 5 7 3.4827 1.1695 -0.1014 6 6 4.2359 -0.0920 -0.0980 7 6 5.3126 -0.0206 0.9894 8 6 6.1738 1.2249 0.7677 9 6 5.2992 2.4803 0.8710 10 1 4.8240 2.5126 1.8514 11 8 6.1070 3.6456 0.6932 12 6 5.7093 4.7690 1.3260 13 1 4.8161 4.7594 1.9330 14 6 6.4467 5.9358 1.1962 15 7 7.5347 5.9476 0.4563 16 14 5.8957 7.4912 2.0717 17 1 4.6510 7.2160 2.8334 18 1 6.9602 7.9368 3.0062 19 1 5.6374 8.5575 1.0709 20 6 4.2226 2.4336 -0.2178 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5139 0.8900 23 1 -0.3634 0.5138 -0.8900 24 1 1.9500 -0.8399 0.0004 25 1 3.5594 -0.9208 0.1114 26 1 4.7051 -0.2401 -1.0706 27 1 4.8375 0.0351 1.9687 28 1 5.9398 -0.9108 0.9394 29 1 6.9561 1.2650 1.5257 30 1 6.6288 1.1804 -0.2217 31 1 8.0509 6.7638 0.3657 32 1 4.6927 2.4927 -1.1994 33 1 3.5370 3.2713 -0.0899 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260353039.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:33 Heat of formation + Delta-G solvation = -85.882548 kcal Electronic energy + Delta-G solvation = -16364.560315 eV Core-core repulsion = 13618.007956 eV Total energy + Delta-G solvation = -2746.552359 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.47014 -39.24123 -37.31551 -35.71895 -34.09206 -33.29068 -31.06050 -27.95739 -26.73251 -25.69037 -23.76391 -22.03046 -20.75466 -19.79121 -19.24520 -17.50069 -17.36589 -16.65097 -15.99887 -15.82278 -15.55411 -15.31476 -15.01250 -14.49801 -14.12323 -13.98643 -13.71274 -13.34399 -13.28913 -13.00685 -12.72692 -12.19149 -12.15604 -11.97728 -11.76933 -11.52196 -11.33408 -11.11075 -10.36056 -10.21472 -9.45889 -8.21247 -5.90117 1.36190 1.41499 1.52127 1.61241 2.05790 2.30566 2.95885 3.11487 3.57351 3.90428 3.95694 4.09424 4.22960 4.29283 4.44337 4.53350 4.65804 4.76147 4.78091 4.80717 4.95049 5.00048 5.05243 5.16842 5.29230 5.40846 5.44549 5.48256 5.94354 6.18864 6.96183 7.22109 7.50940 7.99197 9.02915 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.032685 B = 0.007161 C = 0.006132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.455615 B = 3908.899153 C = 4564.846656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.734 5.734 3 C 0.693 3.307 4 O -0.644 6.644 5 N -0.622 5.622 6 C 0.107 3.893 7 C -0.119 4.119 8 C -0.110 4.110 9 C 0.082 3.918 10 H 0.024 0.976 11 O -0.319 6.319 12 C -0.375 4.375 13 H 0.060 0.940 14 C -0.036 4.036 15 N -0.934 5.934 16 Si 0.999 3.001 17 H -0.266 1.266 18 H -0.269 1.269 19 H -0.273 1.273 20 C 0.124 3.876 21 H 0.121 0.879 22 H 0.042 0.958 23 H 0.045 0.955 24 H 0.414 0.586 25 H 0.115 0.885 26 H 0.088 0.912 27 H 0.062 0.938 28 H 0.119 0.881 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.262 0.738 32 H 0.064 0.936 33 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.150 -18.153 -0.454 20.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.393 5.393 3 C 0.394 3.606 4 O -0.526 6.526 5 N -0.360 5.360 6 C -0.015 4.015 7 C -0.157 4.157 8 C -0.148 4.148 9 C 0.022 3.978 10 H 0.042 0.958 11 O -0.233 6.233 12 C -0.454 4.454 13 H 0.078 0.922 14 C -0.229 4.229 15 N -0.579 5.579 16 Si 0.821 3.179 17 H -0.190 1.190 18 H -0.194 1.194 19 H -0.199 1.199 20 C -0.001 4.001 21 H 0.140 0.860 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.254 0.746 25 H 0.133 0.867 26 H 0.106 0.894 27 H 0.081 0.919 28 H 0.138 0.862 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.319 -17.335 -0.565 19.690 hybrid contribution -0.050 0.911 0.428 1.008 sum -9.369 -16.424 -0.137 18.909 Atomic orbital electron populations 1.21568 0.77146 1.04336 1.01026 1.44955 1.08294 1.06292 1.79730 1.16228 0.81832 0.84747 0.77755 1.90884 1.68733 1.33067 1.59955 1.47330 1.03992 1.08153 1.76570 1.22033 0.94612 0.84252 1.00579 1.21895 0.97256 0.97639 0.98901 1.21610 0.97993 0.92533 1.02646 1.22395 0.91743 0.88286 0.95388 0.95832 1.85605 1.49322 1.17011 1.71404 1.21272 1.09177 0.88307 1.26629 0.92224 1.26099 0.96320 1.01272 0.99248 1.70168 1.17415 1.28610 1.41660 0.84795 0.78180 0.77070 0.77829 1.19039 1.19387 1.19894 1.21742 0.93476 0.85504 0.99367 0.86026 0.93963 0.93642 0.74645 0.86714 0.89413 0.91935 0.86239 0.92190 0.91301 0.92898 0.91762 0.93061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.81 10.71 127.77 1.37 3.18 16 2 N -0.73 -15.70 5.62 -500.19 -2.81 -18.51 16 3 C 0.69 23.59 8.29 179.05 1.49 25.07 16 4 O -0.64 -29.26 15.77 -3.97 -0.06 -29.33 16 5 N -0.62 -20.11 2.97 -836.89 -2.49 -22.60 16 6 C 0.11 2.14 6.39 86.36 0.55 2.69 16 7 C -0.12 -2.61 6.08 30.67 0.19 -2.42 16 8 C -0.11 -3.77 5.55 30.73 0.17 -3.60 16 9 C 0.08 3.74 2.82 30.78 0.09 3.83 16 10 H 0.02 1.14 7.81 -2.39 -0.02 1.12 16 11 O -0.32 -19.08 9.44 -81.99 -0.77 -19.85 16 12 C -0.37 -23.35 9.78 67.92 0.66 -22.69 16 13 H 0.06 3.64 7.65 -2.91 -0.02 3.62 16 14 C -0.04 -2.19 5.49 84.83 0.47 -1.73 16 15 N -0.93 -60.57 13.67 21.61 0.30 -60.28 16 16 Si 1.00 47.52 29.55 68.60 2.03 49.55 16 17 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 18 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 19 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 20 C 0.12 5.31 6.05 86.36 0.52 5.84 16 21 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 22 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 23 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 24 H 0.41 5.35 6.32 -92.71 -0.59 4.76 16 25 H 0.11 1.30 5.65 -2.38 -0.01 1.29 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.12 1.69 8.14 -2.38 -0.02 1.67 16 29 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 31 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 32 H 0.06 2.75 8.14 -2.39 -0.02 2.73 16 33 H 0.05 2.61 6.99 -2.39 -0.02 2.59 16 Total: -1.00 -84.98 275.51 2.21 -82.77 By element: Atomic # 1 Polarization: 7.54 SS G_CDS: 0.52 Total: 8.06 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: 5.50 Total: 10.18 kcal Atomic # 7 Polarization: -96.38 SS G_CDS: -5.01 Total: -101.39 kcal Atomic # 8 Polarization: -48.34 SS G_CDS: -0.84 Total: -49.18 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -84.98 2.21 -82.77 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260353039.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.109 kcal (2) G-P(sol) polarization free energy of solvation -84.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds