Wall clock time and date at job start Mon Mar 30 2020 02:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46653 * 2 1 4 4 C 1.52997 * 109.47108 * 239.99718 * 2 1 3 5 5 C 1.50702 * 109.47034 * 65.00294 * 4 2 1 6 6 H 1.08002 * 119.99898 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99836 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00122 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99679 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47371 * 60.00257 * 9 7 5 11 11 H 1.48501 * 109.47157 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47304 * 300.00092 * 9 7 5 13 13 C 1.52999 * 109.46934 * 119.99843 * 2 1 3 14 14 H 1.08996 * 109.53001 * 59.85975 * 13 2 1 15 15 C 1.51419 * 109.52675 * 180.02562 * 13 2 1 16 16 C 1.53075 * 105.00951 * 225.33206 * 15 13 2 17 17 C 1.44820 * 115.41600 * 265.41962 * 16 15 13 18 18 C 1.55244 * 110.28756 * 64.16388 * 17 16 15 19 19 S 1.79371 * 109.64375 * 286.46985 * 18 17 16 20 20 C 1.54624 * 109.52684 * 299.64704 * 13 2 1 21 21 H 1.09000 * 109.47679 * 300.00280 * 1 2 3 22 22 H 1.09003 * 109.47376 * 60.00427 * 1 2 3 23 23 H 1.08996 * 109.47170 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46856 * 184.99537 * 4 2 1 25 25 H 1.08993 * 109.47527 * 305.00347 * 4 2 1 26 26 H 0.97002 * 119.99863 * 179.97438 * 8 7 5 27 27 H 1.08998 * 110.32718 * 106.45908 * 15 13 2 28 28 H 1.09005 * 110.45596 * 344.26320 * 15 13 2 29 29 H 1.08999 * 108.29511 * 143.87789 * 16 15 13 30 30 H 1.09004 * 108.14968 * 26.84779 * 16 15 13 31 31 H 1.09002 * 109.30887 * 184.36823 * 17 16 15 32 32 H 1.09001 * 109.30453 * 303.96292 * 17 16 15 33 33 H 1.08999 * 109.43366 * 46.71344 * 18 17 16 34 34 H 1.09009 * 109.42799 * 166.56568 * 18 17 16 35 35 H 1.08993 * 109.18978 * 321.23521 * 20 13 2 36 36 H 1.09003 * 109.18409 * 80.48976 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6772 -1.5183 -3.8510 9 14 1.4985 0.5626 -5.2496 10 1 2.0897 1.9234 -5.1871 11 1 1.9936 -0.1374 -6.4621 12 1 0.0184 0.6681 -5.3092 13 6 2.0399 -0.7212 1.2493 14 1 1.6751 -1.7483 1.2515 15 6 3.5541 -0.7214 1.2509 16 6 3.9500 -2.1519 1.6255 17 6 4.2103 -2.3765 3.0323 18 6 2.9175 -2.1509 3.8617 19 16 2.5631 -0.3953 3.9604 20 6 1.5326 0.0119 2.5126 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 3.1263 -0.7994 -1.2055 25 1 1.6054 -1.7198 -1.2951 26 1 2.9245 -1.8412 -4.7316 27 1 3.9321 -0.0175 1.9923 28 1 3.9362 -0.4697 0.2615 29 1 4.8466 -2.4167 1.0651 30 1 3.1455 -2.8190 1.3157 31 1 4.5566 -3.4001 3.1758 32 1 4.9812 -1.6845 3.3711 33 1 2.0847 -2.6657 3.3825 34 1 3.0579 -2.5477 4.8672 35 1 1.5659 1.0876 2.3402 36 1 0.5031 -0.2866 2.7108 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260646916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:45 Heat of formation + Delta-G solvation = -32.211839 kcal Electronic energy + Delta-G solvation = -14556.763326 eV Core-core repulsion = 12358.831518 eV Total energy + Delta-G solvation = -2197.931808 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.124 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.30279 -35.11265 -32.68549 -30.41899 -28.84396 -26.72835 -25.28287 -23.40451 -21.51927 -20.37007 -18.82398 -16.47689 -16.20151 -15.17362 -14.69670 -14.47617 -13.97404 -13.63699 -13.39657 -13.20710 -12.41380 -12.09772 -11.90107 -11.81352 -11.44142 -11.09551 -11.03288 -10.88071 -10.59599 -10.52920 -10.42679 -10.15438 -9.89026 -9.65558 -9.49472 -9.02110 -8.86361 -8.31409 -7.37407 -5.98428 -3.99597 1.88722 2.84728 3.33217 3.37936 3.40236 4.46714 4.77798 4.93440 5.12406 5.15905 5.27394 5.37316 5.54436 5.60083 5.74670 5.84217 5.94014 5.98883 6.09409 6.13263 6.26820 6.32857 6.46117 6.55612 6.60234 6.73551 6.81791 7.01904 7.09468 7.18302 7.71412 7.85920 8.02346 8.45388 9.06648 9.63677 11.12707 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.044293 B = 0.006619 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.998832 B = 4229.396974 C = 4651.750080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 H 0.058 0.942 4 C 0.029 3.971 5 C -0.516 4.516 6 H 0.054 0.946 7 C 0.057 3.943 8 N -0.896 5.896 9 Si 0.888 3.112 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C -0.083 4.083 14 H 0.068 0.932 15 C -0.130 4.130 16 C -0.127 4.127 17 C -0.106 4.106 18 C -0.087 4.087 19 S -0.280 6.280 20 C -0.070 4.070 21 H 0.031 0.969 22 H 0.061 0.939 23 H 0.043 0.957 24 H 0.023 0.977 25 H 0.013 0.987 26 H 0.260 0.740 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 -0.621 13.268 13.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.098 4.098 3 H 0.077 0.923 4 C -0.008 4.008 5 C -0.554 4.554 6 H 0.073 0.927 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.716 3.284 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.103 4.103 14 H 0.086 0.914 15 C -0.168 4.168 16 C -0.164 4.164 17 C -0.146 4.146 18 C -0.236 4.236 19 S -0.051 6.051 20 C -0.218 4.218 21 H 0.050 0.950 22 H 0.080 0.920 23 H 0.062 0.938 24 H 0.041 0.959 25 H 0.031 0.969 26 H 0.069 0.931 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.118 0.882 36 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.743 -0.083 13.945 13.965 hybrid contribution -0.763 -0.482 -1.916 2.118 sum -0.020 -0.565 12.029 12.043 Atomic orbital electron populations 1.21777 0.96578 1.00703 1.00225 1.21300 0.94817 0.99188 0.94533 0.92343 1.19193 0.96427 0.95197 0.90018 1.21233 1.34735 1.08324 0.91141 0.92745 1.25000 0.95320 0.95066 0.99022 1.69949 1.38950 1.21198 1.23462 0.86721 0.78867 0.80177 0.82604 1.20289 1.21366 1.20341 1.21791 0.95935 0.99194 0.93416 0.91413 1.21860 0.95165 0.96356 1.03391 1.20298 1.02211 0.98184 0.95729 1.20618 0.96330 1.01550 0.96063 1.23571 1.01309 0.94909 1.03783 1.85927 1.70214 1.12256 1.36700 1.24187 0.99468 1.04083 0.94022 0.94990 0.91969 0.93826 0.95899 0.96901 0.93055 0.90207 0.89554 0.92367 0.92332 0.91635 0.91102 0.90005 0.88629 0.88210 0.90580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.49 8.73 37.16 0.32 -2.16 16 2 C -0.08 -1.54 1.76 -90.62 -0.16 -1.70 16 3 H 0.06 1.17 8.13 -51.93 -0.42 0.75 16 4 C 0.03 0.71 4.26 -27.88 -0.12 0.59 16 5 C -0.52 -14.22 8.41 -34.44 -0.29 -14.51 16 6 H 0.05 1.46 7.06 -52.49 -0.37 1.09 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -26.64 13.29 55.43 0.74 -25.91 16 9 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C -0.08 -1.38 1.52 -90.57 -0.14 -1.51 16 14 H 0.07 1.16 6.53 -51.93 -0.34 0.82 16 15 C -0.13 -2.12 5.07 -27.49 -0.14 -2.26 16 16 C -0.13 -1.85 4.95 -30.52 -0.15 -2.00 16 17 C -0.11 -1.29 5.49 -29.37 -0.16 -1.45 16 18 C -0.09 -1.05 5.93 38.35 0.23 -0.82 16 19 S -0.28 -3.84 20.09 -107.50 -2.16 -6.00 16 20 C -0.07 -1.00 5.02 38.01 0.19 -0.81 16 21 H 0.03 0.49 6.94 -51.93 -0.36 0.13 16 22 H 0.06 1.24 6.95 -51.93 -0.36 0.87 16 23 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 24 H 0.02 0.60 6.00 -51.93 -0.31 0.29 16 25 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 27 H 0.08 1.25 6.23 -51.93 -0.32 0.93 16 28 H 0.09 1.63 5.71 -51.93 -0.30 1.33 16 29 H 0.06 0.85 8.13 -51.93 -0.42 0.43 16 30 H 0.06 0.90 6.67 -51.93 -0.35 0.56 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 33 H 0.08 1.00 7.85 -51.81 -0.41 0.59 16 34 H 0.10 0.99 8.14 -51.75 -0.42 0.56 16 35 H 0.10 1.43 7.97 -51.93 -0.41 1.02 16 36 H 0.08 1.04 7.64 -51.93 -0.40 0.65 16 LS Contribution 281.61 15.07 4.24 4.24 Total: -1.00 -28.49 281.61 -8.73 -37.21 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -6.01 Total: -0.97 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: -0.51 Total: -25.12 kcal Atomic # 7 Polarization: -26.64 SS G_CDS: 0.74 Total: -25.91 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -3.84 SS G_CDS: -2.16 Total: -6.00 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.49 -8.73 -37.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260646916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.000 kcal (2) G-P(sol) polarization free energy of solvation -28.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds