Wall clock time and date at job start Mon Mar 30 2020 02:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09003 * 109.46653 * 2 1 4 4 C 1.52997 * 109.47108 * 239.99718 * 2 1 3 5 5 C 1.50702 * 109.47034 * 65.00294 * 4 2 1 6 6 H 1.08002 * 119.99898 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99836 * 179.97438 * 5 4 2 8 8 N 1.31507 * 120.00122 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 119.99679 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47371 * 60.00257 * 9 7 5 11 11 H 1.48501 * 109.47157 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47304 * 300.00092 * 9 7 5 13 13 C 1.52999 * 109.46934 * 119.99843 * 2 1 3 14 14 H 1.08996 * 109.53001 * 59.85975 * 13 2 1 15 15 C 1.51419 * 109.52675 * 180.02562 * 13 2 1 16 16 C 1.53075 * 105.00951 * 225.33206 * 15 13 2 17 17 C 1.44820 * 115.41600 * 265.41962 * 16 15 13 18 18 C 1.55244 * 110.28756 * 64.16388 * 17 16 15 19 19 S 1.79371 * 109.64375 * 286.46985 * 18 17 16 20 20 C 1.54624 * 109.52684 * 299.64704 * 13 2 1 21 21 H 1.09000 * 109.47679 * 300.00280 * 1 2 3 22 22 H 1.09003 * 109.47376 * 60.00427 * 1 2 3 23 23 H 1.08996 * 109.47170 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.46856 * 184.99537 * 4 2 1 25 25 H 1.08993 * 109.47527 * 305.00347 * 4 2 1 26 26 H 0.97002 * 119.99863 * 179.97438 * 8 7 5 27 27 H 1.08998 * 110.32718 * 106.45908 * 15 13 2 28 28 H 1.09005 * 110.45596 * 344.26320 * 15 13 2 29 29 H 1.08999 * 108.29511 * 143.87789 * 16 15 13 30 30 H 1.09004 * 108.14968 * 26.84779 * 16 15 13 31 31 H 1.09002 * 109.30887 * 184.36823 * 17 16 15 32 32 H 1.09001 * 109.30453 * 303.96292 * 17 16 15 33 33 H 1.08999 * 109.43366 * 46.71344 * 18 17 16 34 34 H 1.09009 * 109.42799 * 166.56568 * 18 17 16 35 35 H 1.08993 * 109.18978 * 321.23521 * 20 13 2 36 36 H 1.09003 * 109.18409 * 80.48976 * 20 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6413 0.0570 -2.4766 6 1 1.0800 0.9741 -2.3757 7 6 1.9933 -0.4018 -3.7282 8 7 2.6772 -1.5183 -3.8510 9 14 1.4985 0.5626 -5.2496 10 1 2.0897 1.9234 -5.1871 11 1 1.9936 -0.1374 -6.4621 12 1 0.0184 0.6681 -5.3092 13 6 2.0399 -0.7212 1.2493 14 1 1.6751 -1.7483 1.2515 15 6 3.5541 -0.7214 1.2509 16 6 3.9500 -2.1519 1.6255 17 6 4.2103 -2.3765 3.0323 18 6 2.9175 -2.1509 3.8617 19 16 2.5631 -0.3953 3.9604 20 6 1.5326 0.0119 2.5126 21 1 -0.3634 0.5139 0.8899 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 3.1263 -0.7994 -1.2055 25 1 1.6054 -1.7198 -1.2951 26 1 2.9245 -1.8412 -4.7316 27 1 3.9321 -0.0175 1.9923 28 1 3.9362 -0.4697 0.2615 29 1 4.8466 -2.4167 1.0651 30 1 3.1455 -2.8190 1.3157 31 1 4.5566 -3.4001 3.1758 32 1 4.9812 -1.6845 3.3711 33 1 2.0847 -2.6657 3.3825 34 1 3.0579 -2.5477 4.8672 35 1 1.5659 1.0876 2.3402 36 1 0.5031 -0.2866 2.7108 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260646916.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:47:45 Heat of formation + Delta-G solvation = -46.268822 kcal Electronic energy + Delta-G solvation = -14557.372882 eV Core-core repulsion = 12358.831518 eV Total energy + Delta-G solvation = -2198.541364 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 228.124 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.68275 -36.52146 -34.65233 -31.96163 -30.14185 -28.42239 -26.70041 -25.02019 -23.09647 -21.57682 -20.38100 -18.50735 -17.39104 -16.59947 -16.34589 -15.76012 -15.42398 -14.86900 -14.74763 -14.71295 -14.12253 -13.56067 -13.30637 -13.12849 -13.03359 -12.77697 -12.66439 -12.43835 -12.24301 -12.07673 -11.73001 -11.54849 -11.38625 -11.35395 -11.00301 -10.78612 -10.46492 -10.38734 -8.45986 -8.16149 -6.24946 0.82837 1.39404 1.41470 1.49074 1.78126 2.42071 3.16843 3.68319 3.75834 3.86826 4.09265 4.14378 4.27671 4.41788 4.51544 4.66182 4.68667 4.69851 4.73908 4.87014 4.96772 5.05968 5.15477 5.21666 5.27138 5.32296 5.39845 5.43818 5.49009 5.56044 5.65500 5.90085 5.92798 6.31948 6.91693 7.42852 8.94910 Molecular weight = 228.12amu Principal moments of inertia in cm(-1) A = 0.044293 B = 0.006619 C = 0.006018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.998832 B = 4229.396974 C = 4651.750080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.071 4.071 3 H 0.054 0.946 4 C 0.036 3.964 5 C -0.532 4.532 6 H 0.059 0.941 7 C 0.000 4.000 8 N -0.934 5.934 9 Si 0.956 3.044 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.268 1.268 13 C -0.074 4.074 14 H 0.061 0.939 15 C -0.128 4.128 16 C -0.122 4.122 17 C -0.102 4.102 18 C -0.084 4.084 19 S -0.284 6.284 20 C -0.066 4.066 21 H 0.066 0.934 22 H 0.043 0.957 23 H 0.039 0.961 24 H 0.000 1.000 25 H -0.017 1.017 26 H 0.261 0.739 27 H 0.089 0.911 28 H 0.052 0.948 29 H 0.051 0.949 30 H 0.046 0.954 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.103 0.897 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.207 -0.063 14.575 14.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.091 4.091 3 H 0.073 0.927 4 C -0.001 4.001 5 C -0.570 4.570 6 H 0.077 0.923 7 C -0.198 4.198 8 N -0.574 5.574 9 Si 0.781 3.219 10 H -0.193 1.193 11 H -0.211 1.211 12 H -0.193 1.193 13 C -0.094 4.094 14 H 0.080 0.920 15 C -0.166 4.166 16 C -0.159 4.159 17 C -0.142 4.142 18 C -0.232 4.232 19 S -0.056 6.056 20 C -0.213 4.213 21 H 0.085 0.915 22 H 0.062 0.938 23 H 0.059 0.941 24 H 0.018 0.982 25 H 0.001 0.999 26 H 0.070 0.930 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.138 0.862 35 H 0.121 0.879 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.172 0.486 15.264 15.273 hybrid contribution -0.547 -0.689 -2.307 2.469 sum -0.375 -0.203 12.958 12.965 Atomic orbital electron populations 1.21708 0.95250 1.00753 1.01016 1.21134 0.95869 0.98456 0.93682 0.92727 1.19052 0.94888 0.93984 0.92135 1.21679 1.34373 1.08594 0.92348 0.92315 1.25895 0.95332 0.96056 1.02469 1.70087 1.40258 1.22904 1.24200 0.85636 0.78886 0.78873 0.78482 1.19332 1.21091 1.19343 1.21613 0.95825 0.98706 0.93233 0.92023 1.21784 0.95178 0.97860 1.01748 1.20263 1.01401 0.96560 0.97696 1.20575 0.96656 1.02976 0.93954 1.23652 1.00979 0.93506 1.05094 1.85986 1.70096 1.13940 1.35561 1.24046 1.00223 1.03947 0.93117 0.91474 0.93826 0.94137 0.98164 0.99886 0.93041 0.89248 0.92894 0.93023 0.93512 0.89454 0.90755 0.90081 0.86230 0.87899 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.66 8.73 71.98 0.63 -4.04 16 2 C -0.07 -2.82 1.76 -10.79 -0.02 -2.84 16 3 H 0.05 2.19 8.13 -2.39 -0.02 2.17 16 4 C 0.04 1.87 4.26 29.85 0.13 2.00 16 5 C -0.53 -29.88 8.41 25.60 0.22 -29.67 16 6 H 0.06 3.17 7.06 -2.91 -0.02 3.15 16 7 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 8 N -0.93 -56.96 13.29 21.45 0.28 -56.67 16 9 Si 0.96 44.48 29.54 68.60 2.03 46.50 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.29 -13.06 7.11 99.48 0.71 -12.36 16 12 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 13 C -0.07 -2.40 1.52 -10.76 -0.02 -2.42 16 14 H 0.06 2.09 6.53 -2.39 -0.02 2.08 16 15 C -0.13 -4.20 5.07 30.10 0.15 -4.04 16 16 C -0.12 -3.51 4.95 28.14 0.14 -3.37 16 17 C -0.10 -2.26 5.49 28.89 0.16 -2.10 16 18 C -0.08 -1.78 5.93 72.75 0.43 -1.35 16 19 S -0.28 -7.11 20.09 -56.49 -1.13 -8.24 16 20 C -0.07 -1.75 5.02 72.54 0.36 -1.39 16 21 H 0.07 1.93 6.94 -2.39 -0.02 1.91 16 22 H 0.04 1.70 6.95 -2.39 -0.02 1.69 16 23 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.00 0.01 6.00 -2.39 -0.01 -0.01 16 25 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 26 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 27 H 0.09 2.74 6.23 -2.39 -0.01 2.72 16 28 H 0.05 2.09 5.71 -2.38 -0.01 2.08 16 29 H 0.05 1.53 8.13 -2.39 -0.02 1.51 16 30 H 0.05 1.45 6.67 -2.38 -0.02 1.43 16 31 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 32 H 0.07 1.63 8.09 -2.39 -0.02 1.61 16 33 H 0.08 1.77 7.85 -2.46 -0.02 1.75 16 34 H 0.12 2.02 8.14 -2.50 -0.02 2.00 16 35 H 0.10 2.71 7.97 -2.39 -0.02 2.69 16 36 H 0.09 2.16 7.64 -2.39 -0.02 2.15 16 Total: -1.00 -61.75 281.61 4.85 -56.90 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: 1.03 Total: 10.28 kcal Atomic # 6 Polarization: -51.41 SS G_CDS: 2.64 Total: -48.76 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: 0.28 Total: -56.67 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.50 kcal Atomic # 16 Polarization: -7.11 SS G_CDS: -1.13 Total: -8.24 kcal Total: -61.75 4.85 -56.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260646916.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.629 kcal (2) G-P(sol) polarization free energy of solvation -61.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds