Wall clock time and date at job start Mon Mar 30 2020 03:13:01
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.53003 * 109.47158 * 2 1
4 4 C 1.52997 * 109.47178 * 120.00450 * 2 1 3
5 5 C 1.52996 * 113.00028 * 179.97438 * 4 2 1
6 6 C 1.52997 * 109.47131 * 177.83970 * 5 4 2
7 7 C 1.53006 * 109.47127 * 179.97438 * 6 5 4
8 8 O 1.42895 * 109.47036 * 180.02562 * 7 6 5
9 9 C 1.34930 * 116.99983 * 179.97438 * 8 7 6
10 10 H 1.07996 * 119.99818 * 359.97438 * 9 8 7
11 11 C 1.38633 * 119.99896 * 180.02562 * 9 8 7
12 12 N 1.31586 * 119.99898 * 180.02562 * 11 9 8
13 13 Si 1.86797 * 120.00401 * 359.97438 * 11 9 8
14 14 H 1.48504 * 109.47071 * 90.00291 * 13 11 9
15 15 H 1.48498 * 109.47506 * 210.00372 * 13 11 9
16 16 H 1.48501 * 109.47089 * 330.00703 * 13 11 9
17 17 C 1.54041 * 113.92494 * 311.92770 * 4 2 1
18 18 O 1.44180 * 85.51641 * 91.65858 * 17 4 2
19 19 C 1.44178 * 93.33876 * 24.19412 * 18 17 4
20 20 H 1.09005 * 109.46719 * 300.00069 * 1 2 3
21 21 H 1.09004 * 109.47063 * 59.99506 * 1 2 3
22 22 H 1.08998 * 109.47641 * 179.97438 * 1 2 3
23 23 H 1.09005 * 109.46719 * 239.99931 * 2 1 3
24 24 H 1.09000 * 109.46878 * 299.99913 * 3 2 1
25 25 H 1.08996 * 109.46794 * 60.00446 * 3 2 1
26 26 H 1.09004 * 109.46835 * 180.02562 * 3 2 1
27 27 H 1.08996 * 109.47452 * 57.83971 * 5 4 2
28 28 H 1.09001 * 109.46997 * 297.83544 * 5 4 2
29 29 H 1.09001 * 109.47502 * 60.00153 * 6 5 4
30 30 H 1.09001 * 109.47289 * 299.99950 * 6 5 4
31 31 H 1.09001 * 109.47002 * 299.99574 * 7 6 5
32 32 H 1.08993 * 109.46955 * 60.00011 * 7 6 5
33 33 H 0.96997 * 119.99908 * 179.97438 * 12 11 9
34 34 H 1.08995 * 113.86644 * 205.81070 * 17 4 2
35 35 H 1.09000 * 113.86059 * 337.51411 * 17 4 2
36 36 H 1.09000 * 113.86664 * 221.65366 * 19 18 17
37 37 H 1.09004 * 113.86567 * 89.94905 * 19 18 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7213 1.2492
5 6 3.5671 -0.7690 1.3304
6 6 3.9874 -1.4570 2.6307
7 6 5.5146 -1.5052 2.7116
8 8 5.9071 -2.1483 3.9258
9 6 7.2314 -2.2734 4.1523
10 1 7.9407 -1.8955 3.4309
11 6 7.6815 -2.8879 5.3107
12 7 8.9729 -3.0094 5.5318
13 14 6.4547 -3.5421 6.5582
14 1 6.1242 -4.9532 6.2344
15 1 7.0466 -3.4719 7.9183
16 1 5.2179 -2.7213 6.5136
17 6 1.3612 -0.2655 2.5546
18 8 0.4264 -1.3354 2.3091
19 6 1.3613 -2.0805 1.5033
20 1 -0.3633 0.5139 0.8900
21 1 -0.3633 0.5139 -0.8900
22 1 -0.3634 -1.0276 -0.0005
23 1 1.8933 -0.5139 -0.8900
24 1 1.6767 1.9563 -0.8900
25 1 1.6768 1.9563 0.8900
26 1 3.1301 1.4425 -0.0005
27 1 3.9638 0.2461 1.3118
28 1 3.9589 -1.3279 0.4805
29 1 3.5908 -2.4721 2.6494
30 1 3.5956 -0.8981 3.4806
31 1 5.9060 -2.0644 1.8618
32 1 5.9116 -0.4903 2.6928
33 1 9.2878 -3.4390 6.3425
34 1 1.9740 -0.4107 3.4443
35 1 0.9184 0.7288 2.4975
36 1 0.9185 -2.5258 0.6123
37 1 1.9741 -2.7799 2.0719
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000261005331.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:13:01
Heat of formation + Delta-G solvation = -85.573018 kcal
Electronic energy + Delta-G solvation = -16413.028248 eV
Core-core repulsion = 13770.029655 eV
Total energy + Delta-G solvation = -2642.998593 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 228.151 amu
Computer time = 0.34 seconds
Orbital eigenvalues (eV)
-42.17392 -38.65258 -36.15407 -34.85223 -33.86516 -29.91780 -28.34889 -27.37507
-26.84730 -25.23476 -23.77830 -21.83217 -19.77096 -18.94894 -17.81767 -17.40667
-17.21451 -16.49649 -16.25982 -15.62134 -15.46096 -14.95967 -14.56265 -14.26830
-14.00032 -13.94424 -13.31597 -12.95365 -12.94721 -12.77056 -12.62053 -12.48229
-12.12450 -11.93694 -11.82651 -11.64073 -11.46607 -11.30859 -11.10841 -11.03494
-10.38320 -10.31999 -8.29775 -6.00608 1.37047 1.40394 1.59098 2.42284
2.80525 3.02841 3.19989 3.27999 3.72279 3.99049 4.01998 4.16335
4.28059 4.39268 4.49109 4.53557 4.56644 4.59868 4.63940 4.75784
4.76046 4.88356 4.90844 5.03849 5.09163 5.10510 5.20984 5.23386
5.27628 5.37234 5.37880 5.50980 5.52993 5.58731 6.12012 7.09233
7.79636 8.86204
Molecular weight = 228.15amu
Principal moments of inertia in cm(-1)
A = 0.045334 B = 0.005506 C = 0.005112
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 617.487089 B = 5084.063742 C = 5476.239039
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.067 4.067
3 C -0.149 4.149
4 C -0.108 4.108
5 C -0.100 4.100
6 C -0.114 4.114
7 C 0.075 3.925
8 O -0.352 6.352
9 C -0.362 4.362
10 H 0.048 0.952
11 C -0.014 4.014
12 N -0.953 5.953
13 Si 0.976 3.024
14 H -0.272 1.272
15 H -0.278 1.278
16 H -0.264 1.264
17 C 0.031 3.969
18 O -0.397 6.397
19 C 0.031 3.969
20 H 0.050 0.950
21 H 0.062 0.938
22 H 0.051 0.949
23 H 0.083 0.917
24 H 0.067 0.933
25 H 0.054 0.946
26 H 0.058 0.942
27 H 0.079 0.921
28 H 0.077 0.923
29 H 0.067 0.933
30 H 0.067 0.933
31 H 0.030 0.970
32 H 0.030 0.970
33 H 0.275 0.725
34 H 0.078 0.922
35 H 0.100 0.900
36 H 0.102 0.898
37 H 0.079 0.921
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -18.095 6.783 -11.622 22.550
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.086 4.086
3 C -0.206 4.206
4 C -0.108 4.108
5 C -0.137 4.137
6 C -0.152 4.152
7 C -0.002 4.002
8 O -0.269 6.269
9 C -0.441 4.441
10 H 0.066 0.934
11 C -0.207 4.207
12 N -0.600 5.600
13 Si 0.800 3.200
14 H -0.197 1.197
15 H -0.203 1.203
16 H -0.188 1.188
17 C -0.045 4.045
18 O -0.316 6.316
19 C -0.045 4.045
20 H 0.069 0.931
21 H 0.081 0.919
22 H 0.070 0.930
23 H 0.101 0.899
24 H 0.086 0.914
25 H 0.073 0.927
26 H 0.077 0.923
27 H 0.098 0.902
28 H 0.096 0.904
29 H 0.085 0.915
30 H 0.085 0.915
31 H 0.049 0.951
32 H 0.048 0.952
33 H 0.084 0.916
34 H 0.096 0.904
35 H 0.118 0.882
36 H 0.120 0.880
37 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -18.420 6.627 -11.322 22.614
hybrid contribution 0.562 -0.265 0.436 0.759
sum -17.857 6.362 -10.887 21.861
Atomic orbital electron populations
1.21829 0.94432 1.01880 1.01586 1.20834 0.96065 0.96398 0.95280
1.21866 1.01366 0.95040 1.02305 1.23580 0.94893 0.95678 0.96627
1.21399 0.94343 1.01649 0.96352 1.21688 0.92544 1.01734 0.99185
1.22379 0.95851 0.95315 0.86613 1.85137 1.22787 1.78993 1.39980
1.20376 0.80700 1.37174 1.05824 0.93396 1.25237 0.97816 0.98148
0.99535 1.69798 1.14099 1.47366 1.28753 0.85106 0.78808 0.78826
0.77223 1.19705 1.20320 1.18804 1.24308 0.90116 0.92819 0.97283
1.89618 1.33520 1.36062 1.72415 1.24298 0.90096 0.94847 0.95282
0.93089 0.91933 0.92989 0.89853 0.91441 0.92680 0.92299 0.90242
0.90418 0.91456 0.91464 0.95148 0.95191 0.91602 0.90372 0.88222
0.87988 0.90330
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.25 7.91 71.98 0.57 -1.68 16
2 C -0.07 -1.08 2.65 -10.79 -0.03 -1.11 16
3 C -0.15 -2.16 8.80 71.98 0.63 -1.52 16
4 C -0.11 -2.14 0.95 -51.48 -0.05 -2.19 16
5 C -0.10 -2.25 4.67 30.59 0.14 -2.11 16
6 C -0.11 -3.52 4.80 30.60 0.15 -3.37 16
7 C 0.07 3.08 6.02 71.98 0.43 3.51 16
8 O -0.35 -18.90 8.61 -82.00 -0.71 -19.60 16
9 C -0.36 -22.14 10.35 67.91 0.70 -21.44 16
10 H 0.05 3.11 8.00 -2.91 -0.02 3.09 16
11 C -0.01 -0.86 5.49 84.82 0.47 -0.40 16
12 N -0.95 -60.49 13.96 21.61 0.30 -60.19 16
13 Si 0.98 48.36 28.62 68.60 1.96 50.32 16
14 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16
15 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16
16 H -0.26 -12.88 7.11 99.48 0.71 -12.17 16
17 C 0.03 0.69 7.34 72.28 0.53 1.22 16
18 O -0.40 -10.09 10.86 -148.98 -1.62 -11.71 16
19 C 0.03 0.68 7.52 72.27 0.54 1.22 16
20 H 0.05 0.90 6.54 -2.38 -0.02 0.89 16
21 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16
22 H 0.05 0.90 6.53 -2.39 -0.02 0.89 16
23 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16
24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16
25 H 0.05 0.81 7.24 -2.39 -0.02 0.79 16
26 H 0.06 0.88 6.69 -2.39 -0.02 0.87 16
27 H 0.08 1.69 6.68 -2.39 -0.02 1.67 16
28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16
29 H 0.07 2.09 6.12 -2.39 -0.01 2.07 16
30 H 0.07 2.10 6.04 -2.39 -0.01 2.08 16
31 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16
32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16
33 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16
34 H 0.08 1.90 5.73 -2.39 -0.01 1.88 16
35 H 0.10 1.89 6.51 -2.39 -0.02 1.88 16
36 H 0.10 1.85 7.33 -2.39 -0.02 1.83 16
37 H 0.08 1.85 5.93 -2.38 -0.01 1.84 16
Total: -1.00 -68.84 286.39 5.07 -63.77
By element:
Atomic # 1 Polarization: 4.25 SS G_CDS: 1.04 Total: 5.29 kcal
Atomic # 6 Polarization: -31.97 SS G_CDS: 4.09 Total: -27.87 kcal
Atomic # 7 Polarization: -60.49 SS G_CDS: 0.30 Total: -60.19 kcal
Atomic # 8 Polarization: -28.99 SS G_CDS: -2.32 Total: -31.32 kcal
Atomic # 14 Polarization: 48.36 SS G_CDS: 1.96 Total: 50.32 kcal
Total: -68.84 5.07 -63.77 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000261005331.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -21.803 kcal
(2) G-P(sol) polarization free energy of solvation -68.843 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.646 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.770 kcal
(6) G-S(sol) free energy of system = (1) + (5) -85.573 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.34 seconds