Wall clock time and date at job start Mon Mar 30 2020 03:13:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47158 * 2 1 4 4 C 1.52997 * 109.47178 * 120.00450 * 2 1 3 5 5 C 1.52996 * 113.00028 * 179.97438 * 4 2 1 6 6 C 1.52997 * 109.47131 * 177.83970 * 5 4 2 7 7 C 1.53006 * 109.47127 * 179.97438 * 6 5 4 8 8 O 1.42895 * 109.47036 * 180.02562 * 7 6 5 9 9 C 1.34930 * 116.99983 * 179.97438 * 8 7 6 10 10 H 1.07996 * 119.99818 * 359.97438 * 9 8 7 11 11 C 1.38633 * 119.99896 * 180.02562 * 9 8 7 12 12 N 1.31586 * 119.99898 * 180.02562 * 11 9 8 13 13 Si 1.86797 * 120.00401 * 359.97438 * 11 9 8 14 14 H 1.48504 * 109.47071 * 90.00291 * 13 11 9 15 15 H 1.48498 * 109.47506 * 210.00372 * 13 11 9 16 16 H 1.48501 * 109.47089 * 330.00703 * 13 11 9 17 17 C 1.54041 * 113.92494 * 311.92770 * 4 2 1 18 18 O 1.44180 * 85.51641 * 91.65858 * 17 4 2 19 19 C 1.44178 * 93.33876 * 24.19412 * 18 17 4 20 20 H 1.09005 * 109.46719 * 300.00069 * 1 2 3 21 21 H 1.09004 * 109.47063 * 59.99506 * 1 2 3 22 22 H 1.08998 * 109.47641 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.46719 * 239.99931 * 2 1 3 24 24 H 1.09000 * 109.46878 * 299.99913 * 3 2 1 25 25 H 1.08996 * 109.46794 * 60.00446 * 3 2 1 26 26 H 1.09004 * 109.46835 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47452 * 57.83971 * 5 4 2 28 28 H 1.09001 * 109.46997 * 297.83544 * 5 4 2 29 29 H 1.09001 * 109.47502 * 60.00153 * 6 5 4 30 30 H 1.09001 * 109.47289 * 299.99950 * 6 5 4 31 31 H 1.09001 * 109.47002 * 299.99574 * 7 6 5 32 32 H 1.08993 * 109.46955 * 60.00011 * 7 6 5 33 33 H 0.96997 * 119.99908 * 179.97438 * 12 11 9 34 34 H 1.08995 * 113.86644 * 205.81070 * 17 4 2 35 35 H 1.09000 * 113.86059 * 337.51411 * 17 4 2 36 36 H 1.09000 * 113.86664 * 221.65366 * 19 18 17 37 37 H 1.09004 * 113.86567 * 89.94905 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5671 -0.7690 1.3304 6 6 3.9874 -1.4570 2.6307 7 6 5.5146 -1.5052 2.7116 8 8 5.9071 -2.1483 3.9258 9 6 7.2314 -2.2734 4.1523 10 1 7.9407 -1.8955 3.4309 11 6 7.6815 -2.8879 5.3107 12 7 8.9729 -3.0094 5.5318 13 14 6.4547 -3.5421 6.5582 14 1 6.1242 -4.9532 6.2344 15 1 7.0466 -3.4719 7.9183 16 1 5.2179 -2.7213 6.5136 17 6 1.3612 -0.2655 2.5546 18 8 0.4264 -1.3354 2.3091 19 6 1.3613 -2.0805 1.5033 20 1 -0.3633 0.5139 0.8900 21 1 -0.3633 0.5139 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 1.8933 -0.5139 -0.8900 24 1 1.6767 1.9563 -0.8900 25 1 1.6768 1.9563 0.8900 26 1 3.1301 1.4425 -0.0005 27 1 3.9638 0.2461 1.3118 28 1 3.9589 -1.3279 0.4805 29 1 3.5908 -2.4721 2.6494 30 1 3.5956 -0.8981 3.4806 31 1 5.9060 -2.0644 1.8618 32 1 5.9116 -0.4903 2.6928 33 1 9.2878 -3.4390 6.3425 34 1 1.9740 -0.4107 3.4443 35 1 0.9184 0.7288 2.4975 36 1 0.9185 -2.5258 0.6123 37 1 1.9741 -2.7799 2.0719 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000261005331.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:01 Heat of formation + Delta-G solvation = -85.573018 kcal Electronic energy + Delta-G solvation = -16413.028248 eV Core-core repulsion = 13770.029655 eV Total energy + Delta-G solvation = -2642.998593 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.17392 -38.65258 -36.15407 -34.85223 -33.86516 -29.91780 -28.34889 -27.37507 -26.84730 -25.23476 -23.77830 -21.83217 -19.77096 -18.94894 -17.81767 -17.40667 -17.21451 -16.49649 -16.25982 -15.62134 -15.46096 -14.95967 -14.56265 -14.26830 -14.00032 -13.94424 -13.31597 -12.95365 -12.94721 -12.77056 -12.62053 -12.48229 -12.12450 -11.93694 -11.82651 -11.64073 -11.46607 -11.30859 -11.10841 -11.03494 -10.38320 -10.31999 -8.29775 -6.00608 1.37047 1.40394 1.59098 2.42284 2.80525 3.02841 3.19989 3.27999 3.72279 3.99049 4.01998 4.16335 4.28059 4.39268 4.49109 4.53557 4.56644 4.59868 4.63940 4.75784 4.76046 4.88356 4.90844 5.03849 5.09163 5.10510 5.20984 5.23386 5.27628 5.37234 5.37880 5.50980 5.52993 5.58731 6.12012 7.09233 7.79636 8.86204 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.045334 B = 0.005506 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.487089 B = 5084.063742 C = 5476.239039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.067 4.067 3 C -0.149 4.149 4 C -0.108 4.108 5 C -0.100 4.100 6 C -0.114 4.114 7 C 0.075 3.925 8 O -0.352 6.352 9 C -0.362 4.362 10 H 0.048 0.952 11 C -0.014 4.014 12 N -0.953 5.953 13 Si 0.976 3.024 14 H -0.272 1.272 15 H -0.278 1.278 16 H -0.264 1.264 17 C 0.031 3.969 18 O -0.397 6.397 19 C 0.031 3.969 20 H 0.050 0.950 21 H 0.062 0.938 22 H 0.051 0.949 23 H 0.083 0.917 24 H 0.067 0.933 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.030 0.970 32 H 0.030 0.970 33 H 0.275 0.725 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.095 6.783 -11.622 22.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.086 4.086 3 C -0.206 4.206 4 C -0.108 4.108 5 C -0.137 4.137 6 C -0.152 4.152 7 C -0.002 4.002 8 O -0.269 6.269 9 C -0.441 4.441 10 H 0.066 0.934 11 C -0.207 4.207 12 N -0.600 5.600 13 Si 0.800 3.200 14 H -0.197 1.197 15 H -0.203 1.203 16 H -0.188 1.188 17 C -0.045 4.045 18 O -0.316 6.316 19 C -0.045 4.045 20 H 0.069 0.931 21 H 0.081 0.919 22 H 0.070 0.930 23 H 0.101 0.899 24 H 0.086 0.914 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -18.420 6.627 -11.322 22.614 hybrid contribution 0.562 -0.265 0.436 0.759 sum -17.857 6.362 -10.887 21.861 Atomic orbital electron populations 1.21829 0.94432 1.01880 1.01586 1.20834 0.96065 0.96398 0.95280 1.21866 1.01366 0.95040 1.02305 1.23580 0.94893 0.95678 0.96627 1.21399 0.94343 1.01649 0.96352 1.21688 0.92544 1.01734 0.99185 1.22379 0.95851 0.95315 0.86613 1.85137 1.22787 1.78993 1.39980 1.20376 0.80700 1.37174 1.05824 0.93396 1.25237 0.97816 0.98148 0.99535 1.69798 1.14099 1.47366 1.28753 0.85106 0.78808 0.78826 0.77223 1.19705 1.20320 1.18804 1.24308 0.90116 0.92819 0.97283 1.89618 1.33520 1.36062 1.72415 1.24298 0.90096 0.94847 0.95282 0.93089 0.91933 0.92989 0.89853 0.91441 0.92680 0.92299 0.90242 0.90418 0.91456 0.91464 0.95148 0.95191 0.91602 0.90372 0.88222 0.87988 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 7.91 71.98 0.57 -1.68 16 2 C -0.07 -1.08 2.65 -10.79 -0.03 -1.11 16 3 C -0.15 -2.16 8.80 71.98 0.63 -1.52 16 4 C -0.11 -2.14 0.95 -51.48 -0.05 -2.19 16 5 C -0.10 -2.25 4.67 30.59 0.14 -2.11 16 6 C -0.11 -3.52 4.80 30.60 0.15 -3.37 16 7 C 0.07 3.08 6.02 71.98 0.43 3.51 16 8 O -0.35 -18.90 8.61 -82.00 -0.71 -19.60 16 9 C -0.36 -22.14 10.35 67.91 0.70 -21.44 16 10 H 0.05 3.11 8.00 -2.91 -0.02 3.09 16 11 C -0.01 -0.86 5.49 84.82 0.47 -0.40 16 12 N -0.95 -60.49 13.96 21.61 0.30 -60.19 16 13 Si 0.98 48.36 28.62 68.60 1.96 50.32 16 14 H -0.27 -12.93 7.11 99.48 0.71 -12.23 16 15 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 16 H -0.26 -12.88 7.11 99.48 0.71 -12.17 16 17 C 0.03 0.69 7.34 72.28 0.53 1.22 16 18 O -0.40 -10.09 10.86 -148.98 -1.62 -11.71 16 19 C 0.03 0.68 7.52 72.27 0.54 1.22 16 20 H 0.05 0.90 6.54 -2.38 -0.02 0.89 16 21 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 22 H 0.05 0.90 6.53 -2.39 -0.02 0.89 16 23 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 24 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.05 0.81 7.24 -2.39 -0.02 0.79 16 26 H 0.06 0.88 6.69 -2.39 -0.02 0.87 16 27 H 0.08 1.69 6.68 -2.39 -0.02 1.67 16 28 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 29 H 0.07 2.09 6.12 -2.39 -0.01 2.07 16 30 H 0.07 2.10 6.04 -2.39 -0.01 2.08 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.21 16 32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.27 16.15 8.31 -92.71 -0.77 15.38 16 34 H 0.08 1.90 5.73 -2.39 -0.01 1.88 16 35 H 0.10 1.89 6.51 -2.39 -0.02 1.88 16 36 H 0.10 1.85 7.33 -2.39 -0.02 1.83 16 37 H 0.08 1.85 5.93 -2.38 -0.01 1.84 16 Total: -1.00 -68.84 286.39 5.07 -63.77 By element: Atomic # 1 Polarization: 4.25 SS G_CDS: 1.04 Total: 5.29 kcal Atomic # 6 Polarization: -31.97 SS G_CDS: 4.09 Total: -27.87 kcal Atomic # 7 Polarization: -60.49 SS G_CDS: 0.30 Total: -60.19 kcal Atomic # 8 Polarization: -28.99 SS G_CDS: -2.32 Total: -31.32 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 1.96 Total: 50.32 kcal Total: -68.84 5.07 -63.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261005331.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.803 kcal (2) G-P(sol) polarization free energy of solvation -68.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds