Wall clock time and date at job start Mon Mar 30 2020 03:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 H 1.08998 * 109.47145 * 29.99590 * 3 2 1 5 5 C 1.52996 * 109.47031 * 269.99750 * 3 2 1 6 6 C 1.52998 * 109.46942 * 149.99763 * 3 2 1 7 7 C 1.53004 * 110.27658 * 64.36340 * 6 3 2 8 8 C 1.54944 * 110.31284 * 302.16388 * 6 3 2 9 9 C 1.55302 * 100.94306 * 204.64116 * 8 6 3 10 10 C 1.54376 * 102.25449 * 34.13338 * 9 8 6 11 11 C 1.53003 * 109.90785 * 219.08415 * 10 9 8 12 12 C 1.50702 * 109.83436 * 98.15517 * 10 9 8 13 13 H 1.08006 * 119.99250 * 0.41630 * 12 10 9 14 14 C 1.37867 * 120.00308 * 180.41081 * 12 10 9 15 15 N 1.31513 * 120.00410 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99956 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46747 * 60.00627 * 16 14 12 18 18 H 1.48503 * 109.47035 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47505 * 300.00382 * 16 14 12 20 20 O 1.43237 * 107.58806 * 338.64081 * 10 9 8 21 21 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 22 22 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 23 23 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 24 24 H 1.08997 * 109.47597 * 59.99980 * 5 3 2 25 25 H 1.09001 * 109.47120 * 180.02562 * 5 3 2 26 26 H 1.09003 * 109.47460 * 300.00074 * 5 3 2 27 27 H 1.09004 * 109.47047 * 59.29158 * 7 6 3 28 28 H 1.08994 * 109.47543 * 179.29834 * 7 6 3 29 29 H 1.08999 * 109.46754 * 299.29637 * 7 6 3 30 30 H 1.09002 * 111.12383 * 322.56053 * 8 6 3 31 31 H 1.09005 * 111.12443 * 86.72251 * 8 6 3 32 32 H 1.09001 * 110.85111 * 275.93969 * 9 8 6 33 33 H 1.09000 * 111.02364 * 152.40160 * 9 8 6 34 34 H 1.09001 * 109.47095 * 179.62988 * 11 10 9 35 35 H 1.08994 * 109.47371 * 299.63826 * 11 10 9 36 36 H 1.09000 * 109.46768 * 59.63443 * 11 10 9 37 37 H 0.97001 * 120.00393 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2177 1.7713 -1.4425 6 6 3.3589 1.2633 0.7213 7 6 4.3430 0.3778 -0.0458 8 6 3.1784 0.7415 2.1691 9 6 4.4163 1.3698 2.8653 10 6 4.5620 2.7154 2.1228 11 6 6.0424 3.0254 1.8918 12 6 3.9297 3.8176 2.9331 13 1 3.4736 3.5935 3.8862 14 6 3.9334 5.1118 2.4579 15 7 4.4883 5.3845 1.2972 16 14 3.1489 6.4777 3.4620 17 1 3.8286 6.5771 4.7786 18 1 3.2854 7.7663 2.7366 19 1 1.7098 6.1758 3.6694 20 8 3.8896 2.5904 0.8643 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3632 0.5138 -0.8900 24 1 1.2569 1.8014 -1.9564 25 1 2.6614 2.7669 -1.4425 26 1 2.8830 1.0774 -1.9563 27 1 4.4782 0.7726 -1.0528 28 1 5.3019 0.3670 0.4721 29 1 3.9497 -0.6372 -0.1033 30 1 2.2514 1.1114 2.6072 31 1 3.2195 -0.3472 2.2022 32 1 5.3002 0.7487 2.7196 33 1 4.2282 1.5308 3.9268 34 1 6.1368 3.9731 1.3616 35 1 6.5535 3.0936 2.8520 36 1 6.4915 2.2301 1.2969 37 1 4.4906 6.2950 0.9627 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000306284405.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:33:01 Heat of formation + Delta-G solvation = -115.170295 kcal Electronic energy + Delta-G solvation = -17566.818907 eV Core-core repulsion = 14922.536879 eV Total energy + Delta-G solvation = -2644.282028 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.82285 -38.67428 -35.27774 -33.34808 -32.73732 -30.81748 -28.98163 -27.57319 -27.14591 -25.57610 -23.06408 -21.47013 -20.39231 -18.65177 -17.44373 -16.99099 -16.44826 -15.96874 -15.88206 -15.19136 -14.82130 -14.61146 -14.25281 -13.77573 -13.61686 -13.28756 -13.20577 -12.86428 -12.80428 -12.70774 -12.54620 -12.42660 -12.20719 -12.01686 -11.92417 -11.83262 -11.34701 -11.08661 -10.87339 -10.53603 -10.39940 -9.70016 -7.98571 -6.21210 1.41777 1.42033 1.49470 2.44622 2.65470 3.22309 3.67720 3.84531 4.01238 4.18440 4.30978 4.31498 4.53425 4.57445 4.61030 4.65078 4.79233 4.80975 4.85784 4.92673 4.94997 4.98097 5.10151 5.12316 5.17905 5.25025 5.32769 5.39505 5.52643 5.58435 5.71052 6.14807 6.30587 6.41079 6.71462 7.20077 7.54074 9.01309 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.028033 B = 0.009866 C = 0.008905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.566034 B = 2837.461108 C = 3143.586076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.389 6.389 3 C 0.104 3.896 4 H 0.043 0.957 5 C -0.160 4.160 6 C 0.093 3.907 7 C -0.145 4.145 8 C -0.121 4.121 9 C -0.138 4.138 10 C 0.218 3.782 11 C -0.133 4.133 12 C -0.549 4.549 13 H 0.051 0.949 14 C 0.035 3.965 15 N -0.887 5.887 16 Si 0.944 3.056 17 H -0.270 1.270 18 H -0.285 1.285 19 H -0.276 1.276 20 O -0.369 6.369 21 H 0.107 0.893 22 H 0.037 0.963 23 H 0.046 0.954 24 H 0.065 0.935 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.075 0.925 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.039 0.961 36 H 0.028 0.972 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.885 -9.533 -2.263 10.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.309 6.309 3 C 0.046 3.954 4 H 0.061 0.939 5 C -0.217 4.217 6 C 0.053 3.947 7 C -0.202 4.202 8 C -0.159 4.159 9 C -0.176 4.176 10 C 0.181 3.819 11 C -0.191 4.191 12 C -0.587 4.587 13 H 0.069 0.931 14 C -0.168 4.168 15 N -0.524 5.524 16 Si 0.769 3.231 17 H -0.195 1.195 18 H -0.210 1.210 19 H -0.201 1.201 20 O -0.289 6.289 21 H 0.126 0.874 22 H 0.056 0.944 23 H 0.065 0.935 24 H 0.084 0.916 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.094 0.906 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.058 0.942 36 H 0.047 0.953 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.740 -9.386 -2.540 10.817 hybrid contribution -0.499 1.243 0.645 1.486 sum -5.238 -8.143 -1.896 9.867 Atomic orbital electron populations 1.22968 0.79999 1.03884 1.00227 1.87799 1.20874 1.27007 1.95212 1.21851 0.93598 0.83986 0.95957 0.93868 1.22144 1.02116 1.01370 0.96084 1.22218 0.92267 0.85650 0.94615 1.22092 0.98568 0.99471 1.00052 1.22962 0.97707 1.00498 0.94699 1.23128 0.97663 0.96749 1.00058 1.19669 0.89555 0.91708 0.81004 1.21901 0.96741 1.01255 0.99201 1.21573 1.39221 0.93275 1.04618 0.93082 1.25671 0.94982 1.00591 0.95507 1.70091 1.43493 1.19660 1.19153 0.85869 0.79153 0.78845 0.79191 1.19505 1.21029 1.20122 1.88673 1.73201 1.27332 1.39719 0.87427 0.94406 0.93506 0.91630 0.93128 0.91166 0.92550 0.93231 0.90580 0.92728 0.89436 0.91389 0.91713 0.92225 0.94241 0.95328 0.93379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.82 113.37 1.23 1.82 16 2 O -0.39 -12.17 9.54 -148.98 -1.42 -13.60 16 3 C 0.10 3.80 2.21 30.59 0.07 3.87 16 4 H 0.04 1.73 7.79 -2.39 -0.02 1.71 16 5 C -0.16 -5.42 8.99 71.98 0.65 -4.78 16 6 C 0.09 3.73 0.66 -10.13 -0.01 3.72 16 7 C -0.14 -5.07 8.28 71.98 0.60 -4.47 16 8 C -0.12 -4.62 5.69 32.05 0.18 -4.44 16 9 C -0.14 -5.74 5.69 31.85 0.18 -5.56 16 10 C 0.22 10.94 0.82 -11.07 -0.01 10.93 16 11 C -0.13 -6.58 8.53 71.98 0.61 -5.97 16 12 C -0.55 -30.42 8.22 25.60 0.21 -30.20 16 13 H 0.05 2.79 7.48 -2.91 -0.02 2.77 16 14 C 0.03 1.94 5.26 84.65 0.45 2.39 16 15 N -0.89 -51.66 10.93 21.44 0.23 -51.43 16 16 Si 0.94 43.89 29.54 68.60 2.03 45.91 16 17 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 20 O -0.37 -18.72 9.18 -148.98 -1.37 -20.09 16 21 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 22 H 0.04 0.90 8.08 -2.39 -0.02 0.88 16 23 H 0.05 1.01 7.87 -2.39 -0.02 0.99 16 24 H 0.06 1.89 7.87 -2.39 -0.02 1.87 16 25 H 0.05 2.00 7.90 -2.39 -0.02 1.98 16 26 H 0.07 2.21 6.41 -2.39 -0.02 2.20 16 27 H 0.06 1.96 6.40 -2.39 -0.02 1.94 16 28 H 0.05 1.75 7.34 -2.39 -0.02 1.73 16 29 H 0.08 2.34 7.88 -2.39 -0.02 2.32 16 30 H 0.05 2.18 8.06 -2.39 -0.02 2.16 16 31 H 0.09 2.86 8.04 -2.38 -0.02 2.84 16 32 H 0.07 2.55 7.51 -2.39 -0.02 2.53 16 33 H 0.06 2.66 7.61 -2.39 -0.02 2.64 16 34 H 0.06 3.30 6.04 -2.39 -0.01 3.29 16 35 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.03 1.26 7.99 -2.39 -0.02 1.24 16 37 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 Total: -1.00 -61.81 290.54 4.65 -57.17 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 1.02 Total: 14.73 kcal Atomic # 6 Polarization: -36.85 SS G_CDS: 4.15 Total: -32.70 kcal Atomic # 7 Polarization: -51.66 SS G_CDS: 0.23 Total: -51.43 kcal Atomic # 8 Polarization: -30.90 SS G_CDS: -2.79 Total: -33.69 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.91 kcal Total: -61.81 4.65 -57.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000306284405.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.003 kcal (2) G-P(sol) polarization free energy of solvation -61.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds