Wall clock time and date at job start Mon Mar 30 2020 03:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 114.00307 * 2 1 4 4 C 1.53005 * 109.47079 * 59.99785 * 3 2 1 5 5 C 1.52999 * 109.46906 * 299.99955 * 3 2 1 6 6 C 1.53000 * 109.47196 * 179.97438 * 3 2 1 7 7 H 1.09000 * 110.54961 * 187.23842 * 6 3 2 8 8 C 1.55000 * 110.75093 * 310.20541 * 6 3 2 9 9 C 1.54812 * 102.08771 * 155.59092 * 8 6 3 10 10 C 1.54096 * 104.19169 * 339.11761 * 9 8 6 11 11 C 1.52995 * 109.88409 * 238.54840 * 10 9 8 12 12 C 1.50705 * 109.87903 * 117.39362 * 10 9 8 13 13 H 1.07998 * 119.99865 * 5.51049 * 12 10 9 14 14 C 1.37876 * 120.00048 * 185.51293 * 12 10 9 15 15 N 1.31521 * 120.00049 * 5.29630 * 14 12 10 16 16 Si 1.86797 * 119.99876 * 185.29675 * 14 12 10 17 17 H 1.48495 * 109.47298 * 94.99837 * 16 14 12 18 18 H 1.48507 * 109.47171 * 214.99684 * 16 14 12 19 19 H 1.48494 * 109.47219 * 334.99431 * 16 14 12 20 20 O 1.43751 * 107.28998 * 357.97452 * 10 9 8 21 21 H 1.09003 * 109.46924 * 60.00141 * 1 2 3 22 22 H 1.08996 * 109.47445 * 180.02562 * 1 2 3 23 23 H 1.09004 * 109.47189 * 300.00181 * 1 2 3 24 24 H 1.08996 * 109.47082 * 180.02562 * 4 3 2 25 25 H 1.09004 * 109.46890 * 300.00535 * 4 3 2 26 26 H 1.09004 * 109.46903 * 60.00240 * 4 3 2 27 27 H 1.09004 * 109.46967 * 295.76024 * 5 3 2 28 28 H 1.08997 * 109.47016 * 55.75714 * 5 3 2 29 29 H 1.09002 * 109.47271 * 175.75941 * 5 3 2 30 30 H 1.08993 * 110.90738 * 37.39177 * 8 6 3 31 31 H 1.09001 * 110.90846 * 273.78681 * 8 6 3 32 32 H 1.09000 * 110.48523 * 220.44300 * 9 8 6 33 33 H 1.09000 * 110.48909 * 97.79849 * 9 8 6 34 34 H 1.08998 * 109.47018 * 54.91244 * 11 10 9 35 35 H 1.08994 * 109.47502 * 174.91746 * 11 10 9 36 36 H 1.09005 * 109.46787 * 294.91540 * 11 10 9 37 37 H 0.96994 * 119.99723 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5588 2.0648 1.2493 5 6 1.5588 2.0647 -1.2493 6 6 3.5355 1.1846 0.0006 7 1 3.9968 2.1637 0.1293 8 6 4.0086 0.2087 1.1080 9 6 5.3800 -0.2594 0.5633 10 6 5.3056 0.0316 -0.9480 11 6 5.5160 -1.2617 -1.7380 12 6 6.3558 1.0437 -1.3274 13 1 7.0729 1.3790 -0.5927 14 6 6.4011 1.5416 -2.6123 15 7 5.4667 1.2139 -3.4779 16 14 7.7897 2.6816 -3.1238 17 1 8.8666 1.8905 -3.7713 18 1 7.2733 3.6919 -4.0819 19 1 8.3329 3.3689 -1.9248 20 8 3.9966 0.5612 -1.2172 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 2.0018 3.0607 1.2490 25 1 0.4721 2.1508 1.2492 26 1 1.8804 1.5238 2.1393 27 1 1.9446 1.5645 -2.1376 28 1 0.4697 2.0854 -1.2881 29 1 1.9406 3.0850 -1.2121 30 1 3.3214 -0.6317 1.2054 31 1 4.1244 0.7270 2.0598 32 1 5.5167 -1.3263 0.7401 33 1 6.1876 0.3109 1.0224 34 1 4.7972 -2.0109 -1.4064 35 1 5.3728 -1.0658 -2.8005 36 1 6.5282 -1.6296 -1.5695 37 1 5.4988 1.5639 -4.3819 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307181003.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:30 Heat of formation + Delta-G solvation = -114.239556 kcal Electronic energy + Delta-G solvation = -17568.527983 eV Core-core repulsion = 14924.286315 eV Total energy + Delta-G solvation = -2644.241668 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.66851 -38.85002 -34.92036 -33.58628 -32.64142 -31.05457 -28.18320 -27.93184 -27.21884 -25.81990 -22.81174 -21.13500 -20.65904 -18.41929 -17.49244 -16.90456 -16.58927 -15.97940 -15.87571 -15.31554 -14.73651 -14.30857 -14.05630 -13.98070 -13.63682 -13.28168 -13.15141 -12.87209 -12.83054 -12.75615 -12.63039 -12.32279 -12.25136 -12.08525 -12.07455 -11.58391 -11.12679 -10.99163 -10.90453 -10.53844 -10.33486 -9.68841 -7.96822 -6.19362 1.40101 1.41710 1.50873 2.45161 2.96502 3.19301 3.52779 3.86082 4.03797 4.19534 4.29585 4.42850 4.54019 4.56347 4.62913 4.71088 4.74285 4.82059 4.84692 4.92601 4.96715 5.00112 5.08691 5.12986 5.19230 5.24389 5.28785 5.43153 5.51296 5.58796 5.75801 6.03522 6.33942 6.49479 6.75321 7.11580 7.55684 9.04159 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.032823 B = 0.009315 C = 0.008684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.852213 B = 3005.265359 C = 3223.402598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.394 6.394 3 C 0.121 3.879 4 C -0.167 4.167 5 C -0.164 4.164 6 C 0.086 3.914 7 H 0.048 0.952 8 C -0.131 4.131 9 C -0.140 4.140 10 C 0.208 3.792 11 C -0.116 4.116 12 C -0.560 4.560 13 H 0.051 0.949 14 C 0.034 3.966 15 N -0.883 5.883 16 Si 0.942 3.058 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.269 1.269 20 O -0.363 6.363 21 H 0.042 0.958 22 H 0.091 0.909 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.037 0.963 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.029 0.971 35 H 0.041 0.959 36 H 0.047 0.953 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.497 0.612 8.759 12.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.314 6.314 3 C 0.082 3.918 4 C -0.224 4.224 5 C -0.221 4.221 6 C 0.027 3.973 7 H 0.066 0.934 8 C -0.168 4.168 9 C -0.178 4.178 10 C 0.170 3.830 11 C -0.173 4.173 12 C -0.598 4.598 13 H 0.069 0.931 14 C -0.168 4.168 15 N -0.520 5.520 16 Si 0.768 3.232 17 H -0.202 1.202 18 H -0.212 1.212 19 H -0.193 1.193 20 O -0.283 6.283 21 H 0.060 0.940 22 H 0.110 0.890 23 H 0.079 0.921 24 H 0.091 0.909 25 H 0.099 0.901 26 H 0.089 0.911 27 H 0.056 0.944 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.559 0.448 8.370 11.980 hybrid contribution 0.881 0.831 -0.652 1.376 sum -7.678 1.279 7.718 10.961 Atomic orbital electron populations 1.22952 0.80770 1.03305 1.00736 1.88006 1.20589 1.27656 1.95101 1.21465 0.91610 0.83442 0.95283 1.22314 1.02709 1.00739 0.96661 1.22194 1.01343 1.00241 0.98316 1.22862 0.91805 0.95875 0.86729 0.93385 1.22940 0.96218 0.99538 0.98154 1.22992 0.97443 1.00415 0.96959 1.19722 0.82001 0.91061 0.90229 1.21593 0.98362 0.96028 1.01357 1.21805 1.15194 1.26497 0.96300 0.93099 1.25692 0.97027 0.97253 0.96854 1.70235 1.32864 1.44336 1.04519 0.85820 0.80177 0.79082 0.78122 1.20175 1.21250 1.19347 1.89023 1.33305 1.74422 1.31527 0.93970 0.89028 0.92134 0.90936 0.90055 0.91087 0.94370 0.90599 0.92086 0.90660 0.89911 0.91782 0.92148 0.95177 0.93943 0.93434 0.93654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.46 10.21 113.37 1.16 1.62 16 2 O -0.39 -13.97 9.11 -146.49 -1.33 -15.31 16 3 C 0.12 4.22 0.65 -10.79 -0.01 4.22 16 4 C -0.17 -4.26 8.13 71.98 0.59 -3.68 16 5 C -0.16 -5.83 8.26 71.98 0.59 -5.23 16 6 C 0.09 3.67 2.58 31.28 0.08 3.75 16 7 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 8 C -0.13 -4.95 5.87 31.90 0.19 -4.76 16 9 C -0.14 -6.00 6.26 31.58 0.20 -5.81 16 10 C 0.21 10.78 0.74 -11.17 -0.01 10.77 16 11 C -0.12 -5.89 8.45 71.98 0.61 -5.28 16 12 C -0.56 -31.42 8.15 25.60 0.21 -31.21 16 13 H 0.05 2.81 7.35 -2.91 -0.02 2.79 16 14 C 0.03 1.95 5.25 84.65 0.44 2.39 16 15 N -0.88 -52.69 11.26 21.45 0.24 -52.45 16 16 Si 0.94 44.35 29.54 68.60 2.03 46.38 16 17 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 18 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 O -0.36 -19.35 8.78 -146.49 -1.29 -20.63 16 21 H 0.04 1.03 6.32 -2.39 -0.02 1.02 16 22 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 23 H 0.06 1.21 6.42 -2.38 -0.02 1.20 16 24 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 25 H 0.08 1.67 6.54 -2.38 -0.02 1.66 16 26 H 0.07 1.71 7.61 -2.38 -0.02 1.69 16 27 H 0.04 1.68 7.49 -2.38 -0.02 1.66 16 28 H 0.08 2.17 6.32 -2.39 -0.02 2.16 16 29 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 30 H 0.07 2.81 7.05 -2.39 -0.02 2.79 16 31 H 0.08 2.62 8.11 -2.39 -0.02 2.60 16 32 H 0.06 2.52 7.70 -2.39 -0.02 2.50 16 33 H 0.06 2.54 7.40 -2.39 -0.02 2.52 16 34 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.04 2.39 6.79 -2.39 -0.02 2.37 16 36 H 0.05 2.25 8.14 -2.38 -0.02 2.23 16 37 H 0.25 14.54 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -65.85 286.83 4.72 -61.13 By element: Atomic # 1 Polarization: 13.09 SS G_CDS: 1.03 Total: 14.12 kcal Atomic # 6 Polarization: -37.28 SS G_CDS: 4.05 Total: -33.23 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.24 Total: -52.45 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -2.62 Total: -35.94 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -65.85 4.72 -61.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307181003.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.113 kcal (2) G-P(sol) polarization free energy of solvation -65.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds