Wall clock time and date at job start Mon Mar 30 2020 02:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46721 * 2 1 4 4 C 1.50701 * 109.47150 * 120.00385 * 2 1 3 5 5 H 1.07998 * 120.00073 * 119.99761 * 4 2 1 6 6 C 1.37872 * 119.99790 * 299.99499 * 4 2 1 7 7 N 1.31518 * 120.00422 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99783 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47189 * 60.00648 * 8 6 4 10 10 H 1.48509 * 109.47197 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47483 * 300.00179 * 8 6 4 12 12 N 1.46906 * 109.46963 * 240.00195 * 2 1 3 13 13 C 1.48538 * 110.99770 * 62.43437 * 12 2 1 14 14 C 1.54939 * 103.37362 * 159.63955 * 13 12 2 15 15 C 1.54784 * 102.83366 * 322.79636 * 14 13 12 16 16 O 1.42893 * 110.15564 * 262.84917 * 15 14 13 17 17 C 1.50699 * 110.47521 * 140.77149 * 15 14 13 18 18 N 1.34783 * 120.00178 * 89.09736 * 17 15 14 19 19 O 1.21280 * 120.00194 * 269.09319 * 17 15 14 20 20 C 1.47896 * 110.99867 * 179.83264 * 12 2 1 21 21 H 1.08999 * 109.47282 * 65.57056 * 1 2 3 22 22 H 1.09003 * 109.46890 * 185.57160 * 1 2 3 23 23 H 1.08996 * 109.47183 * 305.57073 * 1 2 3 24 24 H 0.96995 * 120.00338 * 179.97438 * 7 6 4 25 25 H 1.09002 * 110.66295 * 278.15310 * 13 12 2 26 26 H 1.08997 * 110.66506 * 41.11835 * 13 12 2 27 27 H 1.09001 * 110.72511 * 81.02624 * 14 13 12 28 28 H 1.09002 * 110.72048 * 204.31169 * 14 13 12 29 29 H 0.96705 * 113.99983 * 295.71934 * 16 15 14 30 30 H 0.97007 * 119.99337 * 0.02562 * 18 17 15 31 31 H 0.96992 * 120.00226 * 179.97438 * 18 17 15 32 32 H 1.08998 * 109.91599 * 333.50291 * 20 12 2 33 33 H 1.08997 * 109.92127 * 94.80477 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4826 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.8076 -1.1191 4.0076 10 1 1.8271 -0.4201 5.2204 11 1 1.8282 -2.5200 4.0081 12 7 2.0197 -0.6925 -1.1995 13 6 1.5920 0.0143 -2.4340 14 6 2.5879 -0.4991 -3.5042 15 6 3.9149 -0.6082 -2.7148 16 8 4.7115 0.5589 -2.9274 17 6 4.6748 -1.8418 -3.1290 18 7 5.5455 -1.7838 -4.1562 19 8 4.5030 -2.8869 -2.5381 20 6 3.4981 -0.7087 -1.2357 21 1 -0.3634 0.4250 -0.9356 22 1 -0.3633 -1.0228 0.0998 23 1 -0.3633 0.5978 0.8359 24 1 0.7083 1.1608 3.4844 25 1 0.5699 -0.2570 -2.6980 26 1 1.6827 1.0935 -2.3103 27 1 2.2819 -1.4760 -3.8787 28 1 2.6795 0.2169 -4.3208 29 1 5.0034 0.6746 -3.8421 30 1 5.6832 -0.9478 -4.6286 31 1 6.0349 -2.5777 -4.4226 32 1 3.8925 0.1422 -0.6803 33 1 3.8699 -1.6396 -0.8077 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307668699.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:38 Heat of formation + Delta-G solvation = -77.478918 kcal Electronic energy + Delta-G solvation = -16690.444338 eV Core-core repulsion = 13944.256387 eV Total energy + Delta-G solvation = -2746.187950 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.27615 -37.75872 -36.09069 -33.56459 -33.15008 -30.80526 -28.62799 -27.46464 -25.02672 -22.71948 -21.74816 -19.86766 -19.42803 -18.47320 -17.00261 -16.15551 -15.85541 -15.11916 -14.71802 -14.48187 -14.16776 -13.29873 -13.18504 -12.96955 -12.22235 -12.05306 -11.85752 -11.42822 -11.10976 -10.98582 -10.78024 -10.61172 -10.36257 -10.18807 -10.00294 -9.79631 -9.74221 -9.42347 -8.84879 -8.38221 -7.27295 -5.95795 -3.99479 2.60689 3.38152 3.39024 3.41610 3.46562 4.14027 4.47673 4.68600 4.79383 4.95533 5.24552 5.38296 5.60178 5.78428 5.88122 6.29123 6.34131 6.47273 6.62273 6.75221 6.86728 7.06010 7.08585 7.13675 7.50740 7.52898 7.65622 7.89489 8.14227 8.22812 8.32900 8.58157 9.06769 9.65452 11.11598 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.033194 B = 0.008150 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.312987 B = 3434.553403 C = 3889.559603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.204 3.796 3 H 0.003 0.997 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.504 5.504 13 C 0.038 3.962 14 C -0.138 4.138 15 C 0.101 3.899 16 O -0.540 6.540 17 C 0.504 3.496 18 N -0.858 5.858 19 O -0.518 6.518 20 C 0.075 3.925 21 H 0.007 0.993 22 H 0.036 0.964 23 H 0.082 0.918 24 H 0.260 0.740 25 H 0.078 0.922 26 H 0.042 0.958 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.365 0.635 30 H 0.396 0.604 31 H 0.400 0.600 32 H 0.063 0.937 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.277 -0.112 -14.609 15.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.098 3.902 3 H 0.020 0.980 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.230 5.230 13 C -0.091 4.091 14 C -0.176 4.176 15 C 0.056 3.944 16 O -0.345 6.345 17 C 0.287 3.713 18 N -0.424 5.424 19 O -0.391 6.391 20 C -0.054 4.054 21 H 0.026 0.974 22 H 0.055 0.945 23 H 0.101 0.899 24 H 0.070 0.930 25 H 0.097 0.903 26 H 0.060 0.940 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.212 0.788 30 H 0.224 0.776 31 H 0.231 0.769 32 H 0.081 0.919 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 5.613 -1.033 -13.249 14.426 hybrid contribution 1.043 0.450 -0.197 1.153 sum 6.656 -0.583 -13.446 15.015 Atomic orbital electron populations 1.21777 0.97371 1.00519 0.98985 1.19487 0.92649 0.92017 0.86093 0.97970 1.21104 1.31106 1.12347 0.89728 0.91926 1.24917 0.95173 0.95046 0.99003 1.69894 1.36999 1.23060 1.23485 0.86575 0.79157 0.79811 0.81975 1.20301 1.21391 1.20169 1.65048 1.05531 1.49775 1.02608 1.23128 0.98361 0.96705 0.90866 1.23150 0.94255 1.02228 0.98005 1.22639 0.89896 0.81547 1.00291 1.86808 1.71399 1.44092 1.32191 1.21284 0.79283 0.91328 0.79374 1.43866 1.46166 1.15875 1.36459 1.90782 1.63904 1.31395 1.53063 1.22599 0.90779 1.03517 0.88468 0.97362 0.94470 0.89934 0.92979 0.90344 0.94018 0.90082 0.90514 0.78777 0.77614 0.76905 0.91864 0.88436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.21 8.91 37.16 0.33 -2.88 16 2 C 0.20 5.33 1.74 -68.86 -0.12 5.21 16 3 H 0.00 0.08 8.00 -51.93 -0.42 -0.34 16 4 C -0.50 -14.42 8.08 -34.44 -0.28 -14.69 16 5 H 0.06 1.82 7.27 -52.49 -0.38 1.44 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.90 -26.08 11.38 55.43 0.63 -25.45 16 8 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 N -0.50 -11.43 5.10 -223.88 -1.14 -12.58 16 13 C 0.04 0.69 5.51 -1.89 -0.01 0.68 16 14 C -0.14 -1.99 6.36 -24.77 -0.16 -2.15 16 15 C 0.10 1.61 1.32 -90.31 -0.12 1.49 16 16 O -0.54 -7.37 12.84 -35.23 -0.45 -7.82 16 17 C 0.50 7.66 6.94 -10.98 -0.08 7.59 16 18 N -0.86 -7.96 8.79 31.22 0.27 -7.69 16 19 O -0.52 -10.31 16.44 5.56 0.09 -10.21 16 20 C 0.07 1.60 5.05 -2.76 -0.01 1.59 16 21 H 0.01 0.17 6.73 -51.93 -0.35 -0.18 16 22 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 23 H 0.08 2.23 6.24 -51.93 -0.32 1.91 16 24 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 25 H 0.08 1.37 7.54 -51.93 -0.39 0.98 16 26 H 0.04 0.78 7.96 -51.93 -0.41 0.37 16 27 H 0.08 1.17 7.86 -51.93 -0.41 0.76 16 28 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 29 H 0.37 2.81 7.57 45.56 0.34 3.15 16 30 H 0.40 2.21 7.29 -40.82 -0.30 1.91 16 31 H 0.40 3.20 8.93 -40.82 -0.36 2.83 16 32 H 0.06 1.47 7.53 -51.93 -0.39 1.08 16 33 H 0.10 2.28 6.52 -51.93 -0.34 1.94 16 LS Contribution 268.59 15.07 4.05 4.05 Total: -1.00 -34.02 268.59 -5.82 -39.83 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -3.71 Total: 4.31 kcal Atomic # 6 Polarization: -1.02 SS G_CDS: -0.54 Total: -1.56 kcal Atomic # 7 Polarization: -45.48 SS G_CDS: -0.24 Total: -45.72 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.36 Total: -18.04 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -34.02 -5.82 -39.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307668699.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.646 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds