Wall clock time and date at job start Mon Mar 30 2020 02:48:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46721 * 2 1 4 4 C 1.50701 * 109.47150 * 120.00385 * 2 1 3 5 5 H 1.07998 * 120.00073 * 119.99761 * 4 2 1 6 6 C 1.37872 * 119.99790 * 299.99499 * 4 2 1 7 7 N 1.31518 * 120.00422 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99783 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47189 * 60.00648 * 8 6 4 10 10 H 1.48509 * 109.47197 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47483 * 300.00179 * 8 6 4 12 12 N 1.46906 * 109.46963 * 240.00195 * 2 1 3 13 13 C 1.48538 * 110.99770 * 62.43437 * 12 2 1 14 14 C 1.54939 * 103.37362 * 159.63955 * 13 12 2 15 15 C 1.54784 * 102.83366 * 322.79636 * 14 13 12 16 16 O 1.42893 * 110.15564 * 262.84917 * 15 14 13 17 17 C 1.50699 * 110.47521 * 140.77149 * 15 14 13 18 18 N 1.34783 * 120.00178 * 89.09736 * 17 15 14 19 19 O 1.21280 * 120.00194 * 269.09319 * 17 15 14 20 20 C 1.47896 * 110.99867 * 179.83264 * 12 2 1 21 21 H 1.08999 * 109.47282 * 65.57056 * 1 2 3 22 22 H 1.09003 * 109.46890 * 185.57160 * 1 2 3 23 23 H 1.08996 * 109.47183 * 305.57073 * 1 2 3 24 24 H 0.96995 * 120.00338 * 179.97438 * 7 6 4 25 25 H 1.09002 * 110.66295 * 278.15310 * 13 12 2 26 26 H 1.08997 * 110.66506 * 41.11835 * 13 12 2 27 27 H 1.09001 * 110.72511 * 81.02624 * 14 13 12 28 28 H 1.09002 * 110.72048 * 204.31169 * 14 13 12 29 29 H 0.96705 * 113.99983 * 295.71934 * 16 15 14 30 30 H 0.97007 * 119.99337 * 0.02562 * 18 17 15 31 31 H 0.96992 * 120.00226 * 179.97438 * 18 17 15 32 32 H 1.08998 * 109.91599 * 333.50291 * 20 12 2 33 33 H 1.08997 * 109.92127 * 94.80477 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1313 6 6 1.6994 -0.2394 2.4826 7 7 0.9429 0.8296 2.6034 8 14 2.3226 -1.1197 4.0078 9 1 3.8076 -1.1191 4.0076 10 1 1.8271 -0.4201 5.2204 11 1 1.8282 -2.5200 4.0081 12 7 2.0197 -0.6925 -1.1995 13 6 1.5920 0.0143 -2.4340 14 6 2.5879 -0.4991 -3.5042 15 6 3.9149 -0.6082 -2.7148 16 8 4.7115 0.5589 -2.9274 17 6 4.6748 -1.8418 -3.1290 18 7 5.5455 -1.7838 -4.1562 19 8 4.5030 -2.8869 -2.5381 20 6 3.4981 -0.7087 -1.2357 21 1 -0.3634 0.4250 -0.9356 22 1 -0.3633 -1.0228 0.0998 23 1 -0.3633 0.5978 0.8359 24 1 0.7083 1.1608 3.4844 25 1 0.5699 -0.2570 -2.6980 26 1 1.6827 1.0935 -2.3103 27 1 2.2819 -1.4760 -3.8787 28 1 2.6795 0.2169 -4.3208 29 1 5.0034 0.6746 -3.8421 30 1 5.6832 -0.9478 -4.6286 31 1 6.0349 -2.5777 -4.4226 32 1 3.8925 0.1422 -0.6803 33 1 3.8699 -1.6396 -0.8077 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307668699.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:38 Heat of formation + Delta-G solvation = -109.021288 kcal Electronic energy + Delta-G solvation = -16691.812117 eV Core-core repulsion = 13944.256387 eV Total energy + Delta-G solvation = -2747.555730 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.56499 -39.21178 -37.49537 -35.26379 -34.42437 -32.62801 -30.19092 -29.12252 -27.14507 -24.18959 -23.27900 -21.46866 -20.93884 -19.57793 -18.30252 -18.08676 -17.37084 -16.69796 -16.02674 -15.95364 -15.61374 -15.08723 -14.89544 -14.35226 -13.94374 -13.64109 -13.56120 -12.95305 -12.88321 -12.68126 -12.49784 -12.45207 -12.26603 -11.98208 -11.77711 -11.58521 -10.94733 -10.75138 -10.66800 -10.55319 -9.10274 -8.14715 -6.26027 1.38682 1.40875 1.41882 1.49057 2.34040 2.40327 2.95426 3.14051 3.41049 3.47269 3.61529 3.98521 4.30565 4.46338 4.68894 4.76871 4.78126 4.90366 4.96695 4.99913 5.06578 5.14557 5.43756 5.68837 5.69839 5.83120 6.17612 6.23355 6.27767 6.59023 6.74910 6.85831 7.23320 7.42732 8.91553 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.033194 B = 0.008150 C = 0.007197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.312987 B = 3434.553403 C = 3889.559603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.209 3.791 3 H -0.031 1.031 4 C -0.526 4.526 5 H 0.047 0.953 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.957 3.043 9 H -0.275 1.275 10 H -0.277 1.277 11 H -0.273 1.273 12 N -0.519 5.519 13 C 0.030 3.970 14 C -0.122 4.122 15 C 0.113 3.887 16 O -0.548 6.548 17 C 0.506 3.494 18 N -0.823 5.823 19 O -0.573 6.573 20 C 0.073 3.927 21 H 0.037 0.963 22 H 0.028 0.972 23 H 0.059 0.941 24 H 0.264 0.736 25 H 0.089 0.911 26 H 0.037 0.963 27 H 0.086 0.914 28 H 0.126 0.874 29 H 0.396 0.604 30 H 0.418 0.582 31 H 0.412 0.588 32 H 0.032 0.968 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.010 -0.003 -16.733 18.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.102 3.898 3 H -0.014 1.014 4 C -0.565 4.565 5 H 0.065 0.935 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.782 3.218 9 H -0.200 1.200 10 H -0.201 1.201 11 H -0.198 1.198 12 N -0.244 5.244 13 C -0.098 4.098 14 C -0.160 4.160 15 C 0.068 3.932 16 O -0.356 6.356 17 C 0.289 3.711 18 N -0.390 5.390 19 O -0.452 6.452 20 C -0.056 4.056 21 H 0.056 0.944 22 H 0.047 0.953 23 H 0.078 0.922 24 H 0.073 0.927 25 H 0.107 0.893 26 H 0.055 0.945 27 H 0.104 0.896 28 H 0.144 0.856 29 H 0.247 0.753 30 H 0.250 0.750 31 H 0.245 0.755 32 H 0.050 0.950 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 6.388 -0.888 -15.461 16.752 hybrid contribution 0.876 0.481 0.383 1.070 sum 7.263 -0.407 -15.079 16.742 Atomic orbital electron populations 1.21581 0.96580 0.99655 0.99543 1.19255 0.93185 0.90109 0.87220 1.01380 1.21337 1.31428 1.12242 0.91446 0.93484 1.25666 0.95280 0.95748 1.01720 1.69999 1.37498 1.23919 1.24244 0.85633 0.78646 0.78792 0.78710 1.20001 1.20147 1.19841 1.64882 1.06451 1.50073 1.03042 1.23279 1.00176 0.96258 0.90085 1.23149 0.91498 1.03680 0.97697 1.22121 0.91437 0.82909 0.96732 1.86759 1.71059 1.42702 1.35121 1.21090 0.79854 0.90023 0.80139 1.43517 1.43685 1.17572 1.34202 1.90771 1.66042 1.33061 1.55330 1.22365 0.90125 1.00595 0.92503 0.94419 0.95263 0.92234 0.92728 0.89300 0.94467 0.89579 0.85567 0.75274 0.74967 0.75495 0.94982 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.88 8.91 71.98 0.64 -5.23 16 2 C 0.21 11.36 1.74 44.17 0.08 11.44 16 3 H -0.03 -1.86 8.00 -2.39 -0.02 -1.88 16 4 C -0.53 -31.27 8.08 25.60 0.21 -31.07 16 5 H 0.05 2.87 7.27 -2.91 -0.02 2.85 16 6 C 0.01 0.87 5.30 84.65 0.45 1.32 16 7 N -0.92 -54.59 11.38 21.45 0.24 -54.34 16 8 Si 0.96 46.22 29.54 68.60 2.03 48.25 16 9 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 12 N -0.52 -24.04 5.10 -862.22 -4.40 -28.44 16 13 C 0.03 1.05 5.51 86.65 0.48 1.53 16 14 C -0.12 -3.13 6.36 31.87 0.20 -2.92 16 15 C 0.11 3.42 1.32 -10.59 -0.01 3.40 16 16 O -0.55 -13.36 12.84 -148.98 -1.91 -15.28 16 17 C 0.51 14.47 6.94 87.66 0.61 15.08 16 18 N -0.82 -12.32 8.79 -173.53 -1.53 -13.85 16 19 O -0.57 -22.81 16.44 -3.03 -0.05 -22.86 16 20 C 0.07 3.23 5.05 86.45 0.44 3.67 16 21 H 0.04 1.63 6.73 -2.39 -0.02 1.62 16 22 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 23 H 0.06 3.29 6.24 -2.39 -0.01 3.28 16 24 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 25 H 0.09 2.92 7.54 -2.39 -0.02 2.90 16 26 H 0.04 1.35 7.96 -2.39 -0.02 1.33 16 27 H 0.09 2.19 7.86 -2.39 -0.02 2.17 16 28 H 0.13 2.03 8.08 -2.39 -0.02 2.01 16 29 H 0.40 4.14 7.57 -74.05 -0.56 3.58 16 30 H 0.42 2.63 7.29 -92.70 -0.68 1.95 16 31 H 0.41 5.15 8.93 -92.71 -0.83 4.33 16 32 H 0.03 1.57 7.53 -2.39 -0.02 1.56 16 33 H 0.07 3.33 6.52 -2.39 -0.02 3.32 16 Total: -1.00 -78.02 268.59 -3.45 -81.47 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -0.91 Total: 7.85 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 3.08 Total: -2.80 kcal Atomic # 7 Polarization: -90.95 SS G_CDS: -5.68 Total: -96.63 kcal Atomic # 8 Polarization: -36.18 SS G_CDS: -1.96 Total: -38.14 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Total: -78.02 -3.45 -81.47 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307668699.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.551 kcal (2) G-P(sol) polarization free energy of solvation -78.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds