Wall clock time and date at job start Mon Mar 30 2020 02:48:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53004 * 1
3 3 H 1.08997 * 109.46721 * 2 1
4 4 C 1.50701 * 109.47150 * 120.00385 * 2 1 3
5 5 H 1.07998 * 120.00073 * 119.99761 * 4 2 1
6 6 C 1.37872 * 119.99790 * 299.99499 * 4 2 1
7 7 N 1.31518 * 120.00422 * 0.02562 * 6 4 2
8 8 Si 1.86800 * 119.99783 * 180.02562 * 6 4 2
9 9 H 1.48497 * 109.47189 * 60.00648 * 8 6 4
10 10 H 1.48509 * 109.47197 * 180.02562 * 8 6 4
11 11 H 1.48498 * 109.47483 * 300.00179 * 8 6 4
12 12 N 1.46906 * 109.46963 * 240.00195 * 2 1 3
13 13 C 1.48538 * 110.99770 * 62.43437 * 12 2 1
14 14 C 1.54939 * 103.37362 * 159.63955 * 13 12 2
15 15 C 1.54784 * 102.83366 * 322.79636 * 14 13 12
16 16 O 1.42893 * 110.15564 * 262.84917 * 15 14 13
17 17 C 1.50699 * 110.47521 * 140.77149 * 15 14 13
18 18 N 1.34783 * 120.00178 * 89.09736 * 17 15 14
19 19 O 1.21280 * 120.00194 * 269.09319 * 17 15 14
20 20 C 1.47896 * 110.99867 * 179.83264 * 12 2 1
21 21 H 1.08999 * 109.47282 * 65.57056 * 1 2 3
22 22 H 1.09003 * 109.46890 * 185.57160 * 1 2 3
23 23 H 1.08996 * 109.47183 * 305.57073 * 1 2 3
24 24 H 0.96995 * 120.00338 * 179.97438 * 7 6 4
25 25 H 1.09002 * 110.66295 * 278.15310 * 13 12 2
26 26 H 1.08997 * 110.66506 * 41.11835 * 13 12 2
27 27 H 1.09001 * 110.72511 * 81.02624 * 14 13 12
28 28 H 1.09002 * 110.72048 * 204.31169 * 14 13 12
29 29 H 0.96705 * 113.99983 * 295.71934 * 16 15 14
30 30 H 0.97007 * 119.99337 * 0.02562 * 18 17 15
31 31 H 0.96992 * 120.00226 * 179.97438 * 18 17 15
32 32 H 1.08998 * 109.91599 * 333.50291 * 20 12 2
33 33 H 1.08997 * 109.92127 * 94.80477 * 20 12 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7105 1.2304
5 1 2.6532 -1.5886 1.1313
6 6 1.6994 -0.2394 2.4826
7 7 0.9429 0.8296 2.6034
8 14 2.3226 -1.1197 4.0078
9 1 3.8076 -1.1191 4.0076
10 1 1.8271 -0.4201 5.2204
11 1 1.8282 -2.5200 4.0081
12 7 2.0197 -0.6925 -1.1995
13 6 1.5920 0.0143 -2.4340
14 6 2.5879 -0.4991 -3.5042
15 6 3.9149 -0.6082 -2.7148
16 8 4.7115 0.5589 -2.9274
17 6 4.6748 -1.8418 -3.1290
18 7 5.5455 -1.7838 -4.1562
19 8 4.5030 -2.8869 -2.5381
20 6 3.4981 -0.7087 -1.2357
21 1 -0.3634 0.4250 -0.9356
22 1 -0.3633 -1.0228 0.0998
23 1 -0.3633 0.5978 0.8359
24 1 0.7083 1.1608 3.4844
25 1 0.5699 -0.2570 -2.6980
26 1 1.6827 1.0935 -2.3103
27 1 2.2819 -1.4760 -3.8787
28 1 2.6795 0.2169 -4.3208
29 1 5.0034 0.6746 -3.8421
30 1 5.6832 -0.9478 -4.6286
31 1 6.0349 -2.5777 -4.4226
32 1 3.8925 0.1422 -0.6803
33 1 3.8699 -1.6396 -0.8077
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000307668699.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:48:38
Heat of formation + Delta-G solvation = -109.021288 kcal
Electronic energy + Delta-G solvation = -16691.812117 eV
Core-core repulsion = 13944.256387 eV
Total energy + Delta-G solvation = -2747.555730 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 228.126 amu
Computer time = 0.24 seconds
Orbital eigenvalues (eV)
-41.56499 -39.21178 -37.49537 -35.26379 -34.42437 -32.62801 -30.19092 -29.12252
-27.14507 -24.18959 -23.27900 -21.46866 -20.93884 -19.57793 -18.30252 -18.08676
-17.37084 -16.69796 -16.02674 -15.95364 -15.61374 -15.08723 -14.89544 -14.35226
-13.94374 -13.64109 -13.56120 -12.95305 -12.88321 -12.68126 -12.49784 -12.45207
-12.26603 -11.98208 -11.77711 -11.58521 -10.94733 -10.75138 -10.66800 -10.55319
-9.10274 -8.14715 -6.26027 1.38682 1.40875 1.41882 1.49057 2.34040
2.40327 2.95426 3.14051 3.41049 3.47269 3.61529 3.98521 4.30565
4.46338 4.68894 4.76871 4.78126 4.90366 4.96695 4.99913 5.06578
5.14557 5.43756 5.68837 5.69839 5.83120 6.17612 6.23355 6.27767
6.59023 6.74910 6.85831 7.23320 7.42732 8.91553
Molecular weight = 228.13amu
Principal moments of inertia in cm(-1)
A = 0.033194 B = 0.008150 C = 0.007197
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 843.312987 B = 3434.553403 C = 3889.559603
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.115 4.115
2 C 0.209 3.791
3 H -0.031 1.031
4 C -0.526 4.526
5 H 0.047 0.953
6 C 0.015 3.985
7 N -0.917 5.917
8 Si 0.957 3.043
9 H -0.275 1.275
10 H -0.277 1.277
11 H -0.273 1.273
12 N -0.519 5.519
13 C 0.030 3.970
14 C -0.122 4.122
15 C 0.113 3.887
16 O -0.548 6.548
17 C 0.506 3.494
18 N -0.823 5.823
19 O -0.573 6.573
20 C 0.073 3.927
21 H 0.037 0.963
22 H 0.028 0.972
23 H 0.059 0.941
24 H 0.264 0.736
25 H 0.089 0.911
26 H 0.037 0.963
27 H 0.086 0.914
28 H 0.126 0.874
29 H 0.396 0.604
30 H 0.418 0.582
31 H 0.412 0.588
32 H 0.032 0.968
33 H 0.067 0.933
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 7.010 -0.003 -16.733 18.142
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.174 4.174
2 C 0.102 3.898
3 H -0.014 1.014
4 C -0.565 4.565
5 H 0.065 0.935
6 C -0.184 4.184
7 N -0.557 5.557
8 Si 0.782 3.218
9 H -0.200 1.200
10 H -0.201 1.201
11 H -0.198 1.198
12 N -0.244 5.244
13 C -0.098 4.098
14 C -0.160 4.160
15 C 0.068 3.932
16 O -0.356 6.356
17 C 0.289 3.711
18 N -0.390 5.390
19 O -0.452 6.452
20 C -0.056 4.056
21 H 0.056 0.944
22 H 0.047 0.953
23 H 0.078 0.922
24 H 0.073 0.927
25 H 0.107 0.893
26 H 0.055 0.945
27 H 0.104 0.896
28 H 0.144 0.856
29 H 0.247 0.753
30 H 0.250 0.750
31 H 0.245 0.755
32 H 0.050 0.950
33 H 0.085 0.915
Dipole moment (debyes) X Y Z Total
from point charges 6.388 -0.888 -15.461 16.752
hybrid contribution 0.876 0.481 0.383 1.070
sum 7.263 -0.407 -15.079 16.742
Atomic orbital electron populations
1.21581 0.96580 0.99655 0.99543 1.19255 0.93185 0.90109 0.87220
1.01380 1.21337 1.31428 1.12242 0.91446 0.93484 1.25666 0.95280
0.95748 1.01720 1.69999 1.37498 1.23919 1.24244 0.85633 0.78646
0.78792 0.78710 1.20001 1.20147 1.19841 1.64882 1.06451 1.50073
1.03042 1.23279 1.00176 0.96258 0.90085 1.23149 0.91498 1.03680
0.97697 1.22121 0.91437 0.82909 0.96732 1.86759 1.71059 1.42702
1.35121 1.21090 0.79854 0.90023 0.80139 1.43517 1.43685 1.17572
1.34202 1.90771 1.66042 1.33061 1.55330 1.22365 0.90125 1.00595
0.92503 0.94419 0.95263 0.92234 0.92728 0.89300 0.94467 0.89579
0.85567 0.75274 0.74967 0.75495 0.94982 0.91454
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.12 -5.88 8.91 71.98 0.64 -5.23 16
2 C 0.21 11.36 1.74 44.17 0.08 11.44 16
3 H -0.03 -1.86 8.00 -2.39 -0.02 -1.88 16
4 C -0.53 -31.27 8.08 25.60 0.21 -31.07 16
5 H 0.05 2.87 7.27 -2.91 -0.02 2.85 16
6 C 0.01 0.87 5.30 84.65 0.45 1.32 16
7 N -0.92 -54.59 11.38 21.45 0.24 -54.34 16
8 Si 0.96 46.22 29.54 68.60 2.03 48.25 16
9 H -0.27 -13.05 7.11 99.48 0.71 -12.35 16
10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16
11 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16
12 N -0.52 -24.04 5.10 -862.22 -4.40 -28.44 16
13 C 0.03 1.05 5.51 86.65 0.48 1.53 16
14 C -0.12 -3.13 6.36 31.87 0.20 -2.92 16
15 C 0.11 3.42 1.32 -10.59 -0.01 3.40 16
16 O -0.55 -13.36 12.84 -148.98 -1.91 -15.28 16
17 C 0.51 14.47 6.94 87.66 0.61 15.08 16
18 N -0.82 -12.32 8.79 -173.53 -1.53 -13.85 16
19 O -0.57 -22.81 16.44 -3.03 -0.05 -22.86 16
20 C 0.07 3.23 5.05 86.45 0.44 3.67 16
21 H 0.04 1.63 6.73 -2.39 -0.02 1.62 16
22 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16
23 H 0.06 3.29 6.24 -2.39 -0.01 3.28 16
24 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16
25 H 0.09 2.92 7.54 -2.39 -0.02 2.90 16
26 H 0.04 1.35 7.96 -2.39 -0.02 1.33 16
27 H 0.09 2.19 7.86 -2.39 -0.02 2.17 16
28 H 0.13 2.03 8.08 -2.39 -0.02 2.01 16
29 H 0.40 4.14 7.57 -74.05 -0.56 3.58 16
30 H 0.42 2.63 7.29 -92.70 -0.68 1.95 16
31 H 0.41 5.15 8.93 -92.71 -0.83 4.33 16
32 H 0.03 1.57 7.53 -2.39 -0.02 1.56 16
33 H 0.07 3.33 6.52 -2.39 -0.02 3.32 16
Total: -1.00 -78.02 268.59 -3.45 -81.47
By element:
Atomic # 1 Polarization: 8.76 SS G_CDS: -0.91 Total: 7.85 kcal
Atomic # 6 Polarization: -5.88 SS G_CDS: 3.08 Total: -2.80 kcal
Atomic # 7 Polarization: -90.95 SS G_CDS: -5.68 Total: -96.63 kcal
Atomic # 8 Polarization: -36.18 SS G_CDS: -1.96 Total: -38.14 kcal
Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal
Total: -78.02 -3.45 -81.47 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000307668699.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.551 kcal
(2) G-P(sol) polarization free energy of solvation -78.025 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.576 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.446 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.470 kcal
(6) G-S(sol) free energy of system = (1) + (5) -109.021 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.24 seconds