Wall clock time and date at job start Mon Mar 30 2020 03:01:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46502 * 119.99557 * 2 1 4 4 C 1.50703 * 109.46892 * 269.99599 * 3 2 1 5 5 H 1.07997 * 120.00320 * 0.02562 * 4 3 2 6 6 C 1.37876 * 119.99780 * 180.02562 * 4 3 2 7 7 N 1.31513 * 120.00146 * 180.02562 * 6 4 3 8 8 Si 1.86803 * 119.99877 * 0.02562 * 6 4 3 9 9 H 1.48507 * 109.47277 * 90.00078 * 8 6 4 10 10 H 1.48504 * 109.47368 * 209.99699 * 8 6 4 11 11 H 1.48499 * 109.47407 * 330.00086 * 8 6 4 12 12 C 1.34780 * 120.00326 * 180.02562 * 2 1 3 13 13 O 1.21280 * 119.99921 * 180.02562 * 12 2 1 14 14 C 1.50703 * 119.99702 * 0.02562 * 12 2 1 15 15 N 1.46895 * 109.47042 * 180.02562 * 14 12 2 16 16 C 1.47796 * 111.00337 * 174.99946 * 15 14 12 17 17 C 1.54587 * 105.24463 * 123.47848 * 16 15 14 18 18 C 1.55005 * 102.46516 * 21.06593 * 17 16 15 19 19 O 1.44568 * 102.67233 * 323.51164 * 18 17 16 20 20 H 1.08996 * 109.46996 * 269.99331 * 1 2 3 21 21 H 1.08997 * 109.47570 * 30.00489 * 1 2 3 22 22 H 1.09008 * 109.46867 * 149.99941 * 1 2 3 23 23 H 1.08996 * 109.47067 * 30.00155 * 3 2 1 24 24 H 1.09000 * 109.46924 * 150.00396 * 3 2 1 25 25 H 0.97005 * 119.99719 * 179.97438 * 7 6 4 26 26 H 1.08995 * 109.47352 * 60.00030 * 14 12 2 27 27 H 1.09007 * 109.46846 * 299.99634 * 14 12 2 28 28 H 1.09002 * 110.28689 * 242.42175 * 16 15 14 29 29 H 1.08998 * 110.28542 * 4.52986 * 16 15 14 30 30 H 1.09004 * 110.80660 * 139.31335 * 17 16 15 31 31 H 1.09001 * 110.80727 * 262.81833 * 17 16 15 32 32 H 1.09001 * 110.77222 * 81.81265 * 18 17 16 33 33 H 1.09004 * 110.76875 * 205.02539 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0975 1.0962 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.3456 3.2574 -2.9127 8 14 3.7348 3.9281 -0.2529 9 1 5.1082 3.5060 0.1226 10 1 3.7507 5.3550 -0.6642 11 1 2.8291 3.7587 0.9116 12 6 2.1390 -1.1672 -0.0005 13 8 3.3518 -1.1671 -0.0001 14 6 1.3855 -2.4723 -0.0017 15 7 2.3401 -3.5888 -0.0014 16 6 1.6395 -4.8847 0.1177 17 6 2.0878 -5.7039 -1.1142 18 6 3.4084 -5.0015 -1.5206 19 8 3.1258 -3.6108 -1.2447 20 1 -0.3633 -0.0001 1.0276 21 1 -0.3634 0.8899 -0.5139 22 1 -0.3633 -0.8901 -0.5139 23 1 1.6083 2.0284 0.5138 24 1 3.1499 1.1385 0.5138 25 1 3.8224 4.0834 -3.0899 26 1 0.7592 -2.5295 -0.8919 27 1 0.7585 -2.5306 0.8881 28 1 1.9353 -5.3912 1.0365 29 1 0.5602 -4.7339 0.0991 30 1 2.2699 -6.7437 -0.8424 31 1 1.3505 -5.6352 -1.9141 32 1 4.2386 -5.3559 -0.9097 33 1 3.6173 -5.1538 -2.5796 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308558682.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:03 Heat of formation + Delta-G solvation = -41.840875 kcal Electronic energy + Delta-G solvation = -16251.689431 eV Core-core repulsion = 13507.046862 eV Total energy + Delta-G solvation = -2744.642569 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.72135 -39.43026 -36.54718 -34.77327 -34.14766 -32.59046 -30.68753 -28.06237 -27.14638 -24.75872 -23.54458 -22.56066 -20.11876 -19.15053 -18.04847 -17.70330 -16.83692 -16.82965 -16.69015 -15.91815 -15.38049 -14.77597 -14.65149 -14.34984 -14.15138 -13.80752 -13.62188 -13.23667 -13.22059 -13.18147 -12.75175 -12.56780 -12.42559 -12.08985 -12.00630 -11.75082 -11.23834 -10.83734 -10.58387 -9.58511 -9.34622 -8.34634 -6.39817 1.31835 1.37478 1.45635 1.78609 1.87943 2.31083 2.34033 2.99857 3.36803 3.65545 3.80710 3.96914 4.08242 4.16883 4.37491 4.45392 4.51194 4.67441 4.68278 4.75329 4.82473 4.92629 4.96144 4.97946 5.09262 5.40991 5.46364 5.65114 5.86553 6.24970 6.61129 6.74065 7.21603 7.51540 8.82857 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.040892 B = 0.006612 C = 0.006217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.564527 B = 4233.608624 C = 4502.347782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.613 5.613 3 C 0.225 3.775 4 C -0.537 4.537 5 H 0.023 0.977 6 C 0.008 3.992 7 N -0.948 5.948 8 Si 0.952 3.048 9 H -0.278 1.278 10 H -0.272 1.272 11 H -0.235 1.235 12 C 0.495 3.505 13 O -0.573 6.573 14 C 0.027 3.973 15 N -0.347 5.347 16 C -0.003 4.003 17 C -0.148 4.148 18 C 0.020 3.980 19 O -0.277 6.277 20 H 0.085 0.915 21 H 0.064 0.936 22 H 0.087 0.913 23 H 0.054 0.946 24 H 0.015 0.985 25 H 0.269 0.731 26 H 0.088 0.912 27 H 0.161 0.839 28 H 0.116 0.884 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.852 -16.948 8.752 21.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.346 5.346 3 C 0.102 3.898 4 C -0.576 4.576 5 H 0.041 0.959 6 C -0.190 4.190 7 N -0.588 5.588 8 Si 0.775 3.225 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.158 1.158 12 C 0.283 3.717 13 O -0.451 6.451 14 C -0.104 4.104 15 N -0.116 5.116 16 C -0.130 4.130 17 C -0.186 4.186 18 C -0.058 4.058 19 O -0.281 6.281 20 H 0.104 0.896 21 H 0.083 0.917 22 H 0.105 0.895 23 H 0.072 0.928 24 H 0.033 0.967 25 H 0.077 0.923 26 H 0.106 0.894 27 H 0.178 0.822 28 H 0.134 0.866 29 H 0.113 0.887 30 H 0.136 0.864 31 H 0.101 0.899 32 H 0.085 0.915 33 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -8.758 -16.534 8.931 20.732 hybrid contribution 0.082 0.575 -0.907 1.077 sum -8.676 -15.959 8.024 19.858 Atomic orbital electron populations 1.21993 0.77485 1.03888 1.03196 1.47977 1.08492 1.05729 1.72441 1.19303 0.92753 0.82640 0.95075 1.21594 1.36858 1.06656 0.92491 0.95886 1.25920 0.95210 0.99017 0.98842 1.70064 1.42802 1.24522 1.21422 0.85652 0.79508 0.77628 0.79745 1.20407 1.19732 1.15780 1.21074 0.88029 0.86243 0.76330 1.90657 1.16448 1.87647 1.50374 1.22566 0.93754 0.88259 1.05801 1.70129 1.22778 1.03863 1.14792 1.23924 0.99689 0.88502 1.00897 1.23463 0.96077 1.01857 0.97229 1.23908 0.98245 0.81611 1.02011 1.91971 1.70611 1.26113 1.39454 0.89618 0.91701 0.89491 0.92808 0.96653 0.92258 0.89436 0.82201 0.86625 0.88671 0.86381 0.89858 0.91452 0.87834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.16 10.24 127.77 1.31 3.47 16 2 N -0.61 -26.02 2.86 -851.11 -2.43 -28.45 16 3 C 0.22 11.50 4.23 85.63 0.36 11.86 16 4 C -0.54 -33.26 9.94 25.60 0.25 -33.00 16 5 H 0.02 1.59 8.06 -2.91 -0.02 1.57 16 6 C 0.01 0.47 5.47 84.65 0.46 0.93 16 7 N -0.95 -62.15 13.96 21.45 0.30 -61.85 16 8 Si 0.95 46.10 27.47 68.60 1.88 47.99 16 9 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 10 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.23 -10.11 6.54 99.48 0.65 -9.46 16 12 C 0.50 21.73 7.58 87.66 0.66 22.39 16 13 O -0.57 -32.10 15.33 10.98 0.17 -31.93 16 14 C 0.03 0.81 4.00 85.56 0.34 1.15 16 15 N -0.35 -10.80 5.46 -512.88 -2.80 -13.60 16 16 C 0.00 -0.05 7.08 86.67 0.61 0.56 16 17 C -0.15 -2.36 7.12 31.82 0.23 -2.14 16 18 C 0.02 0.50 7.94 72.67 0.58 1.08 16 19 O -0.28 -10.64 11.07 -38.24 -0.42 -11.06 16 20 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 21 H 0.06 1.99 8.07 -2.39 -0.02 1.97 16 22 H 0.09 1.91 6.44 -2.38 -0.02 1.89 16 23 H 0.05 2.47 7.13 -2.39 -0.02 2.46 16 24 H 0.02 0.85 6.85 -2.39 -0.02 0.83 16 25 H 0.27 16.28 8.31 -92.70 -0.77 15.51 16 26 H 0.09 2.31 7.40 -2.39 -0.02 2.29 16 27 H 0.16 3.09 8.10 -2.38 -0.02 3.07 16 28 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.10 1.17 7.61 -2.39 -0.02 1.16 16 30 H 0.12 1.15 8.14 -2.38 -0.02 1.13 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -89.00 277.32 2.54 -86.46 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: 1.03 Total: 6.14 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: 4.81 Total: 6.30 kcal Atomic # 7 Polarization: -98.97 SS G_CDS: -4.93 Total: -103.90 kcal Atomic # 8 Polarization: -42.74 SS G_CDS: -0.26 Total: -42.99 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 1.88 Total: 47.99 kcal Total: -89.00 2.54 -86.46 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308558682.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.621 kcal (2) G-P(sol) polarization free energy of solvation -88.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds