Wall clock time and date at job start Mon Mar 30 2020 02:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34629 * 117.00276 * 2 1 4 4 O 1.21510 * 120.00180 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99952 * 179.97438 * 3 2 1 6 6 C 1.47585 * 134.49245 * 179.97438 * 5 3 2 7 7 C 1.53943 * 86.11917 * 155.35870 * 6 5 3 8 8 N 1.46898 * 113.74146 * 137.94959 * 7 6 5 9 9 C 1.46900 * 111.00038 * 154.99966 * 8 7 6 10 10 H 1.08999 * 109.47030 * 325.00590 * 9 8 7 11 11 C 1.53001 * 109.47019 * 85.00167 * 9 8 7 12 12 C 1.50700 * 109.47353 * 205.00421 * 9 8 7 13 13 H 1.07999 * 120.00030 * 354.36198 * 12 9 8 14 14 C 1.37874 * 119.99869 * 174.36556 * 12 9 8 15 15 N 1.31517 * 120.00031 * 156.80004 * 14 12 9 16 16 Si 1.86804 * 120.00293 * 336.80267 * 14 12 9 17 17 H 1.48497 * 109.47223 * 180.02562 * 16 14 12 18 18 H 1.48505 * 109.46659 * 299.99796 * 16 14 12 19 19 H 1.48497 * 109.47147 * 59.99538 * 16 14 12 20 20 C 1.47581 * 134.49658 * 359.97438 * 5 3 2 21 21 H 1.08999 * 109.46726 * 300.00183 * 1 2 3 22 22 H 1.08999 * 109.46870 * 59.99763 * 1 2 3 23 23 H 1.08996 * 109.47125 * 180.02562 * 1 2 3 24 24 H 1.09000 * 113.76721 * 41.05553 * 6 5 3 25 25 H 1.08999 * 113.77302 * 269.66278 * 6 5 3 26 26 H 1.08995 * 113.74079 * 269.15668 * 7 6 5 27 27 H 1.00900 * 110.99702 * 31.05345 * 8 7 6 28 28 H 1.09002 * 109.47128 * 293.05988 * 11 9 8 29 29 H 1.09001 * 109.47164 * 53.05265 * 11 9 8 30 30 H 1.08994 * 109.47265 * 173.05238 * 11 9 8 31 31 H 0.97003 * 119.99825 * 354.92626 * 15 14 12 32 32 H 1.09007 * 113.76555 * 90.33600 * 20 5 3 33 33 H 1.08996 * 113.76431 * 318.94734 * 20 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1995 0.0000 4 8 1.4016 2.2186 -0.0005 5 7 3.4092 1.2700 0.0005 6 6 4.3870 2.3754 0.0002 7 6 5.3634 1.3728 0.6417 8 7 6.7261 1.4438 0.0978 9 6 7.7084 0.9519 1.0730 10 1 7.3890 1.2236 2.0791 11 6 7.8154 -0.5706 0.9655 12 6 9.0525 1.5713 0.7883 13 1 9.1878 2.1890 -0.0872 14 6 10.1093 1.3492 1.6454 15 7 11.3448 1.4751 1.2125 16 14 9.7864 0.8694 3.4217 17 1 11.0798 0.6901 4.1290 18 1 9.0023 1.9397 4.0888 19 1 9.0205 -0.4022 3.4595 20 6 4.4972 0.2728 0.0016 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 4.1144 3.2033 0.6548 25 1 4.6830 2.7000 -0.9974 26 1 5.3401 1.3736 1.7314 27 1 6.9490 2.3824 -0.1979 28 1 6.8791 -1.0244 1.2905 29 1 8.0139 -0.8487 -0.0695 30 1 8.6293 -0.9232 1.5990 31 1 11.5141 1.6517 0.2739 32 1 4.8254 -0.0203 -0.9957 33 1 4.3124 -0.5781 0.6572 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308587881.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:01 Heat of formation + Delta-G solvation = -38.817613 kcal Electronic energy + Delta-G solvation = -15890.014040 eV Core-core repulsion = 13145.502569 eV Total energy + Delta-G solvation = -2744.511470 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.54967 -38.89634 -36.20516 -35.25022 -32.36334 -30.10148 -28.15709 -26.73202 -26.04416 -24.65418 -21.54923 -19.87248 -19.84969 -17.91843 -17.52592 -17.04405 -16.66122 -15.49195 -14.93501 -14.53440 -13.80575 -13.50166 -13.42529 -13.21120 -12.65322 -12.52450 -12.11073 -12.02179 -11.72696 -11.29656 -11.02853 -10.84449 -10.69677 -10.55887 -10.39503 -10.07694 -9.82926 -9.02093 -8.77506 -8.28131 -7.76856 -6.53963 -4.13938 1.99606 2.83146 3.35627 3.39277 3.56663 3.84051 4.44525 4.58349 4.82503 5.01041 5.06986 5.10481 5.16711 5.30054 5.36046 5.51217 5.62387 5.71977 5.73063 6.15599 6.29181 6.37318 6.64003 6.72300 6.85422 7.38561 7.59645 7.69066 7.97077 8.24823 8.31586 8.34265 8.87185 9.52468 10.83646 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.054886 B = 0.005336 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.023508 B = 5246.298547 C = 5361.199450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.669 3.331 4 O -0.581 6.581 5 N -0.630 5.630 6 C 0.127 3.873 7 C 0.051 3.949 8 N -0.664 5.664 9 C 0.190 3.810 10 H -0.003 1.003 11 C -0.133 4.133 12 C -0.616 4.616 13 H 0.062 0.938 14 C 0.040 3.960 15 N -0.895 5.895 16 Si 1.037 2.963 17 H -0.284 1.284 18 H -0.285 1.285 19 H -0.276 1.276 20 C 0.117 3.883 21 H 0.061 0.939 22 H 0.061 0.939 23 H 0.101 0.899 24 H 0.082 0.918 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.345 0.655 28 H 0.018 0.982 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.271 0.729 32 H 0.096 0.904 33 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.162 -3.320 -1.020 16.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 O -0.284 6.284 3 C 0.425 3.575 4 O -0.471 6.471 5 N -0.372 5.372 6 C 0.005 3.995 7 C -0.061 4.061 8 N -0.297 5.297 9 C 0.081 3.919 10 H 0.014 0.986 11 C -0.192 4.192 12 C -0.653 4.653 13 H 0.080 0.920 14 C -0.167 4.167 15 N -0.528 5.528 16 Si 0.865 3.135 17 H -0.210 1.210 18 H -0.211 1.211 19 H -0.203 1.203 20 C -0.006 4.006 21 H 0.080 0.920 22 H 0.080 0.920 23 H 0.119 0.881 24 H 0.101 0.899 25 H 0.112 0.888 26 H 0.100 0.900 27 H 0.165 0.835 28 H 0.037 0.963 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.114 0.886 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.918 -3.960 0.088 16.403 hybrid contribution -0.971 1.028 -0.935 1.695 sum -16.889 -2.933 -0.847 17.163 Atomic orbital electron populations 1.23158 0.74797 1.03247 1.02551 1.86264 1.23754 1.31187 1.87181 1.17540 0.81762 0.81992 0.76249 1.90974 1.63860 1.35161 1.57115 1.48514 1.00413 1.13059 1.75242 1.23574 0.82924 0.91204 1.01762 1.23589 0.90186 0.94372 0.97970 1.60652 0.99033 1.29011 1.40999 1.19515 0.91160 0.92569 0.88685 0.98557 1.22058 0.98144 0.97792 1.01162 1.22015 0.94678 1.35610 1.13009 0.91991 1.25650 0.92421 0.93902 1.04695 1.70841 1.20656 1.42950 1.18341 0.84136 0.75954 0.77129 0.76324 1.21019 1.21147 1.20254 1.23508 0.81658 0.93389 1.02027 0.92009 0.92025 0.88098 0.89926 0.88780 0.89982 0.83521 0.96281 0.93087 0.93242 0.91935 0.88614 0.90258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.56 10.56 101.05 1.07 1.62 16 2 O -0.37 -5.13 10.55 -40.29 -0.43 -5.56 16 3 C 0.67 10.79 8.92 54.06 0.48 11.28 16 4 O -0.58 -10.76 16.86 -19.28 -0.33 -11.08 16 5 N -0.63 -9.44 3.61 -184.34 -0.66 -10.10 16 6 C 0.13 1.75 8.41 -2.97 -0.03 1.72 16 7 C 0.05 0.77 4.21 -69.91 -0.29 0.48 16 8 N -0.66 -12.17 6.37 -102.61 -0.65 -12.83 16 9 C 0.19 4.18 2.19 -68.86 -0.15 4.03 16 10 H 0.00 -0.07 6.04 -51.93 -0.31 -0.38 16 11 C -0.13 -2.81 9.12 37.16 0.34 -2.47 16 12 C -0.62 -16.25 8.77 -34.44 -0.30 -16.55 16 13 H 0.06 1.76 7.92 -52.49 -0.42 1.34 16 14 C 0.04 1.11 5.19 -17.82 -0.09 1.02 16 15 N -0.90 -26.46 13.70 55.43 0.76 -25.70 16 16 Si 1.04 24.11 26.45 -169.99 -4.50 19.62 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 19 H -0.28 -5.98 6.16 56.52 0.35 -5.64 16 20 C 0.12 1.65 8.68 -2.97 -0.03 1.62 16 21 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 23 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.08 1.30 7.48 -51.93 -0.39 0.91 16 27 H 0.34 6.26 8.08 -39.29 -0.32 5.94 16 28 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 30 H 0.05 1.10 5.48 -51.93 -0.28 0.81 16 31 H 0.27 7.97 8.73 -40.82 -0.36 7.61 16 32 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 280.95 15.07 4.23 4.23 Total: -1.00 -30.94 280.95 -5.30 -36.24 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -4.73 Total: 2.43 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: 1.00 Total: 2.75 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.56 Total: -48.63 kcal Atomic # 8 Polarization: -15.89 SS G_CDS: -0.75 Total: -16.64 kcal Atomic # 14 Polarization: 24.11 SS G_CDS: -4.50 Total: 19.62 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -30.94 -5.30 -36.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308587881.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.577 kcal (2) G-P(sol) polarization free energy of solvation -30.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds