Wall clock time and date at job start Mon Mar 30 2020 03:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42903 * 113.99764 * 2 1 4 4 C 1.52995 * 109.47009 * 60.00609 * 3 2 1 5 5 C 1.53000 * 109.46953 * 300.00114 * 3 2 1 6 6 C 1.53006 * 109.46663 * 180.02562 * 3 2 1 7 7 C 1.52998 * 109.46822 * 65.00168 * 6 3 2 8 8 H 1.08998 * 110.27939 * 52.90836 * 7 6 3 9 9 C 1.54949 * 110.30732 * 175.00057 * 7 6 3 10 10 C 1.55295 * 100.94461 * 155.36133 * 9 7 6 11 11 C 1.54380 * 102.25113 * 325.86278 * 10 9 7 12 12 H 1.09001 * 109.83370 * 261.75574 * 11 10 9 13 13 C 1.50706 * 109.83220 * 140.87145 * 11 10 9 14 14 H 1.08005 * 119.99758 * 0.18788 * 13 11 10 15 15 C 1.37871 * 120.00102 * 180.18673 * 13 11 10 16 16 N 1.31516 * 120.00217 * 0.02562 * 15 13 11 17 17 Si 1.86800 * 119.99766 * 179.97438 * 15 13 11 18 18 H 1.48501 * 109.47057 * 179.97438 * 17 15 13 19 19 H 1.48500 * 109.47389 * 300.00068 * 17 15 13 20 20 H 1.48504 * 109.47102 * 60.00417 * 17 15 13 21 21 O 1.43233 * 107.66800 * 21.31392 * 11 10 9 22 22 H 1.09009 * 109.47072 * 299.99618 * 1 2 3 23 23 H 1.08997 * 109.47338 * 59.99534 * 1 2 3 24 24 H 1.09004 * 109.46997 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.46895 * 180.02562 * 4 3 2 26 26 H 1.09007 * 109.46783 * 299.99616 * 4 3 2 27 27 H 1.08995 * 109.47781 * 59.99614 * 4 3 2 28 28 H 1.09000 * 109.47112 * 300.00219 * 5 3 2 29 29 H 1.09003 * 109.47022 * 60.00559 * 5 3 2 30 30 H 1.09001 * 109.46620 * 179.97438 * 5 3 2 31 31 H 1.09002 * 109.47100 * 305.00087 * 6 3 2 32 32 H 1.08993 * 109.46563 * 185.00091 * 6 3 2 33 33 H 1.08996 * 111.12519 * 37.43386 * 9 7 6 34 34 H 1.09010 * 111.12167 * 273.28051 * 9 7 6 35 35 H 1.09000 * 110.84883 * 207.67777 * 10 9 7 36 36 H 1.09004 * 111.02647 * 84.13334 * 10 9 7 37 37 H 0.97001 * 119.99646 * 359.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5589 2.0647 1.2493 5 6 1.5587 2.0647 -1.2492 6 6 3.5355 1.1846 -0.0006 7 6 3.9951 0.5369 -1.3083 8 1 3.5804 1.0733 -2.1618 9 6 5.5426 0.5190 -1.3847 10 6 5.7763 -0.6726 -2.3528 11 6 4.6181 -1.6250 -1.9855 12 1 4.9762 -2.3973 -1.3048 13 6 4.0639 -2.2613 -3.2342 14 1 4.4891 -2.0205 -4.1973 15 6 3.0139 -3.1506 -3.1470 16 7 2.4958 -3.4434 -1.9742 17 14 2.3265 -3.9387 -4.6948 18 1 1.2111 -4.8498 -4.3329 19 1 1.8255 -2.8806 -5.6084 20 1 3.3968 -4.7127 -5.3735 21 8 3.6013 -0.8460 -1.3447 22 1 -0.3634 0.5138 0.8901 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 2.0018 3.0606 1.2490 26 1 0.4722 2.1507 1.2493 27 1 1.8805 1.5238 2.1392 28 1 1.8803 1.5238 -2.1392 29 1 0.4721 2.1508 -1.2491 30 1 2.0017 3.0607 -1.2490 31 1 3.8515 0.5682 0.8409 32 1 3.9785 2.1764 0.0889 33 1 5.9820 0.3227 -0.4067 34 1 5.9259 1.4485 -1.8060 35 1 6.7408 -1.1435 -2.1627 36 1 5.7008 -0.3528 -3.3921 37 1 2.8525 -3.0339 -1.1705 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308647855.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:57 Heat of formation + Delta-G solvation = -126.779906 kcal Electronic energy + Delta-G solvation = -17375.929720 eV Core-core repulsion = 14731.144262 eV Total energy + Delta-G solvation = -2644.785458 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.52914 -39.24170 -35.21187 -34.14812 -32.63338 -30.90119 -28.40647 -28.16669 -27.11926 -25.03817 -22.34079 -21.98476 -20.48580 -18.99654 -17.72588 -16.81613 -16.53184 -16.31657 -15.81352 -15.62230 -15.31352 -14.55558 -14.32689 -13.88393 -13.69597 -13.57360 -13.18647 -12.81815 -12.77472 -12.59160 -12.55492 -12.38320 -12.17802 -12.08466 -11.92105 -11.73129 -11.47397 -11.00858 -10.85169 -10.54619 -10.29233 -9.64717 -8.53604 -6.31629 1.49991 1.59890 1.78513 2.60142 3.04184 3.17473 3.51397 3.73953 3.89054 3.99565 4.14034 4.25401 4.29799 4.40373 4.50032 4.53793 4.59249 4.70109 4.72629 4.80000 4.85052 4.88065 4.90229 4.90979 4.99604 5.09609 5.15063 5.25742 5.35673 5.45745 5.57433 6.04713 6.19106 6.60564 6.67168 6.91992 7.63130 8.86472 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.025262 B = 0.010252 C = 0.008093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.106929 B = 2730.631138 C = 3458.954843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.388 6.388 3 C 0.100 3.900 4 C -0.168 4.168 5 C -0.174 4.174 6 C -0.098 4.098 7 C 0.069 3.931 8 H 0.049 0.951 9 C -0.141 4.141 10 C -0.134 4.134 11 C 0.177 3.823 12 H -0.012 1.012 13 C -0.639 4.639 14 H 0.045 0.955 15 C -0.021 4.021 16 N -0.915 5.915 17 Si 1.113 2.887 18 H -0.284 1.284 19 H -0.274 1.274 20 H -0.268 1.268 21 O -0.381 6.381 22 H 0.061 0.939 23 H 0.040 0.960 24 H 0.064 0.936 25 H 0.089 0.911 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.039 0.961 29 H 0.062 0.938 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.117 0.883 33 H 0.077 0.923 34 H 0.100 0.900 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.260 13.573 3.967 14.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.307 6.307 3 C 0.061 3.939 4 C -0.225 4.225 5 C -0.231 4.231 6 C -0.135 4.135 7 C 0.011 3.989 8 H 0.067 0.933 9 C -0.178 4.178 10 C -0.171 4.171 11 C 0.121 3.879 12 H 0.006 0.994 13 C -0.676 4.676 14 H 0.064 0.936 15 C -0.223 4.223 16 N -0.550 5.550 17 Si 0.935 3.065 18 H -0.209 1.209 19 H -0.200 1.200 20 H -0.193 1.193 21 O -0.301 6.301 22 H 0.079 0.921 23 H 0.059 0.941 24 H 0.083 0.917 25 H 0.107 0.893 26 H 0.084 0.916 27 H 0.075 0.925 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.108 0.892 31 H 0.076 0.924 32 H 0.135 0.865 33 H 0.096 0.904 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.461 12.281 3.523 12.860 hybrid contribution 1.113 0.841 0.453 1.467 sum -0.347 13.122 3.975 13.715 Atomic orbital electron populations 1.22741 0.82016 1.01852 1.00220 1.88285 1.19411 1.28127 1.94925 1.21669 0.93637 0.83283 0.95263 1.22348 1.02209 1.01213 0.96714 1.22433 1.01878 1.01088 0.97741 1.21776 0.93550 1.01607 0.96585 1.23050 0.93440 0.85397 0.96974 0.93295 1.23262 0.95883 0.98888 0.99764 1.22967 0.98279 0.96387 0.99502 1.20301 0.86616 0.89919 0.91053 0.99421 1.22623 1.21833 1.29513 0.93660 0.93628 1.27259 0.94585 0.95521 1.04920 1.70736 1.41665 1.43251 0.99342 0.83029 0.76230 0.75930 0.71344 1.20902 1.19997 1.19277 1.88774 1.44563 1.16906 1.79850 0.92110 0.94110 0.91739 0.89250 0.91609 0.92497 0.94153 0.91888 0.89218 0.92388 0.86470 0.90450 0.88113 0.91150 0.92077 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.97 10.21 113.37 1.16 2.12 16 2 O -0.39 -16.33 9.03 -132.36 -1.20 -17.53 16 3 C 0.10 3.20 0.82 -10.79 -0.01 3.19 16 4 C -0.17 -3.91 8.25 71.98 0.59 -3.31 16 5 C -0.17 -5.06 7.79 71.98 0.56 -4.50 16 6 C -0.10 -3.15 4.31 30.60 0.13 -3.01 16 7 C 0.07 2.78 3.10 31.26 0.10 2.88 16 8 H 0.05 2.02 6.01 -2.39 -0.01 2.00 16 9 C -0.14 -4.84 6.57 32.05 0.21 -4.63 16 10 C -0.13 -5.73 6.53 31.85 0.21 -5.52 16 11 C 0.18 9.83 2.94 30.32 0.09 9.92 16 12 H -0.01 -0.72 7.99 -2.39 -0.02 -0.74 16 13 C -0.64 -38.79 8.75 25.60 0.22 -38.57 16 14 H 0.05 2.70 7.52 -2.91 -0.02 2.67 16 15 C -0.02 -1.29 5.41 84.65 0.46 -0.83 16 16 N -0.91 -60.41 13.55 21.45 0.29 -60.12 16 17 Si 1.11 53.37 29.90 68.60 2.05 55.42 16 18 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 19 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 20 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 21 O -0.38 -20.62 8.27 -132.36 -1.09 -21.72 16 22 H 0.06 1.65 6.42 -2.38 -0.02 1.63 16 23 H 0.04 1.31 6.42 -2.39 -0.02 1.30 16 24 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 25 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.06 1.40 6.54 -2.38 -0.02 1.39 16 27 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.04 1.45 6.19 -2.39 -0.01 1.44 16 29 H 0.06 1.68 6.54 -2.39 -0.02 1.66 16 30 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 32 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.08 2.47 8.06 -2.39 -0.02 2.45 16 34 H 0.10 2.72 8.14 -2.38 -0.02 2.70 16 35 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 36 H 0.06 2.63 7.65 -2.38 -0.02 2.61 16 37 H 0.26 18.21 6.54 -92.71 -0.61 17.60 16 Total: -1.00 -75.35 287.75 4.96 -70.39 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: 1.19 Total: 15.84 kcal Atomic # 6 Polarization: -46.00 SS G_CDS: 3.72 Total: -42.28 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: 0.29 Total: -60.12 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -2.29 Total: -39.25 kcal Atomic # 14 Polarization: 53.37 SS G_CDS: 2.05 Total: 55.42 kcal Total: -75.35 4.96 -70.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308647855.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.395 kcal (2) G-P(sol) polarization free energy of solvation -75.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds