Wall clock time and date at job start Mon Mar 30 2020 03:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00076 * 2 1 4 4 C 1.52999 * 109.47226 * 59.99900 * 3 2 1 5 5 C 1.53001 * 109.46889 * 299.99745 * 3 2 1 6 6 C 1.52997 * 109.47227 * 179.97438 * 3 2 1 7 7 C 1.53005 * 109.47228 * 299.90946 * 6 3 2 8 8 H 1.09005 * 109.81786 * 306.46681 * 7 6 3 9 9 C 1.54386 * 109.83088 * 185.58608 * 7 6 3 10 10 C 1.55308 * 102.25012 * 219.12859 * 9 7 6 11 11 C 1.54941 * 100.94135 * 34.12968 * 10 9 7 12 12 H 1.09000 * 110.30629 * 82.57218 * 11 10 9 13 13 C 1.50699 * 110.30759 * 204.63932 * 11 10 9 14 14 H 1.07993 * 120.00342 * 358.61089 * 13 11 10 15 15 C 1.37885 * 119.99762 * 178.61412 * 13 11 10 16 16 N 1.31508 * 119.99971 * 359.72701 * 15 13 11 17 17 Si 1.86797 * 119.99677 * 180.02562 * 15 13 11 18 18 H 1.48497 * 109.47392 * 90.00044 * 17 15 13 19 19 H 1.48500 * 109.47137 * 209.99988 * 17 15 13 20 20 H 1.48504 * 109.47495 * 329.99793 * 17 15 13 21 21 O 1.43371 * 109.75317 * 67.46920 * 7 6 3 22 22 H 1.09002 * 109.47366 * 180.02562 * 1 2 3 23 23 H 1.09001 * 109.47332 * 300.00221 * 1 2 3 24 24 H 1.08998 * 109.46863 * 60.00235 * 1 2 3 25 25 H 1.09000 * 109.46964 * 180.02562 * 4 3 2 26 26 H 1.09004 * 109.47276 * 299.99753 * 4 3 2 27 27 H 1.08998 * 109.47235 * 60.00214 * 4 3 2 28 28 H 1.08998 * 109.46993 * 305.56832 * 5 3 2 29 29 H 1.08997 * 109.47301 * 65.57614 * 5 3 2 30 30 H 1.09002 * 109.46833 * 185.57210 * 5 3 2 31 31 H 1.09000 * 109.47839 * 179.90720 * 6 3 2 32 32 H 1.09009 * 109.47082 * 59.90743 * 6 3 2 33 33 H 1.09002 * 110.84610 * 100.93491 * 9 7 6 34 34 H 1.09001 * 110.84302 * 337.31752 * 9 7 6 35 35 H 1.09005 * 111.12004 * 276.21284 * 10 9 7 36 36 H 1.09000 * 111.15805 * 152.06846 * 10 9 7 37 37 H 0.97002 * 119.99957 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5588 2.0648 1.2492 5 6 1.5588 2.0647 -1.2493 6 6 3.5354 1.1847 0.0006 7 6 3.9866 0.4276 1.2514 8 1 3.5709 0.9018 2.1405 9 6 5.5283 0.4224 1.3329 10 6 5.8262 -1.0118 1.8488 11 6 4.6899 -1.8125 1.1645 12 1 4.9663 -2.0610 0.1398 13 6 4.3916 -3.0674 1.9438 14 1 4.9627 -3.3013 2.8300 15 6 3.3895 -3.9170 1.5252 16 7 2.6905 -3.6295 0.4490 17 14 3.0193 -5.4721 2.4916 18 1 1.9974 -5.1792 3.5284 19 1 2.5044 -6.5167 1.5703 20 1 4.2620 -5.9569 3.1445 21 8 3.5516 -0.9364 1.1754 22 1 -0.3634 -1.0277 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 2.0018 3.0607 1.2489 26 1 0.4721 2.1509 1.2492 27 1 1.8804 1.5239 2.1392 28 1 1.7927 1.4761 -2.1364 29 1 0.4837 2.2374 -1.2008 30 1 2.0785 3.0214 -1.3006 31 1 3.9789 2.1804 -0.0010 32 1 3.8573 0.6421 -0.8884 33 1 5.8817 1.1711 2.0419 34 1 5.9692 0.5800 0.3486 35 1 5.7444 -1.0635 2.9346 36 1 6.8052 -1.3549 1.5143 37 1 1.9853 -4.2270 0.1548 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308647856.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:13:59 Heat of formation + Delta-G solvation = -119.344698 kcal Electronic energy + Delta-G solvation = -17326.348604 eV Core-core repulsion = 14681.885561 eV Total energy + Delta-G solvation = -2644.463043 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.39289 -39.03257 -34.96892 -34.09219 -32.42859 -30.97295 -28.37751 -28.26374 -27.22574 -25.06935 -22.09409 -21.75967 -20.38665 -18.55112 -17.49752 -16.80346 -16.58042 -16.25282 -16.10077 -15.65253 -14.76869 -14.38766 -14.10652 -13.89058 -13.68801 -13.51554 -13.17208 -12.86365 -12.80194 -12.61127 -12.50231 -12.35075 -12.18640 -12.01899 -11.97108 -11.67855 -11.28461 -10.92916 -10.86977 -10.59818 -10.20656 -9.53161 -8.02925 -6.24725 1.40158 1.42182 1.52066 2.44882 3.12458 3.20262 3.67912 3.88509 4.01796 4.07624 4.24803 4.32413 4.44196 4.47110 4.57089 4.64877 4.71758 4.75425 4.81155 4.89144 4.91998 4.94382 4.97030 5.01479 5.13144 5.18534 5.21322 5.34424 5.43848 5.55708 5.69285 5.84213 6.29510 6.71748 6.76023 7.27735 7.51011 9.02743 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.026530 B = 0.009896 C = 0.007827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1055.159788 B = 2828.710919 C = 3576.719402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.376 6.376 3 C 0.099 3.901 4 C -0.171 4.171 5 C -0.168 4.168 6 C -0.108 4.108 7 C 0.061 3.939 8 H 0.063 0.937 9 C -0.141 4.141 10 C -0.142 4.142 11 C 0.201 3.799 12 H -0.019 1.019 13 C -0.561 4.561 14 H 0.059 0.941 15 C 0.025 3.975 16 N -0.886 5.886 17 Si 0.955 3.045 18 H -0.278 1.278 19 H -0.281 1.281 20 H -0.263 1.263 21 O -0.361 6.361 22 H 0.061 0.939 23 H 0.045 0.955 24 H 0.052 0.948 25 H 0.087 0.913 26 H 0.062 0.938 27 H 0.047 0.953 28 H 0.047 0.953 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.108 0.892 32 H 0.044 0.956 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.071 0.929 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.083 13.053 -0.555 13.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.294 6.294 3 C 0.060 3.940 4 C -0.228 4.228 5 C -0.225 4.225 6 C -0.146 4.146 7 C 0.002 3.998 8 H 0.080 0.920 9 C -0.178 4.178 10 C -0.180 4.180 11 C 0.145 3.855 12 H -0.001 1.001 13 C -0.598 4.598 14 H 0.077 0.923 15 C -0.178 4.178 16 N -0.523 5.523 17 Si 0.780 3.220 18 H -0.204 1.204 19 H -0.207 1.207 20 H -0.187 1.187 21 O -0.280 6.280 22 H 0.079 0.921 23 H 0.063 0.937 24 H 0.070 0.930 25 H 0.106 0.894 26 H 0.081 0.919 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.085 0.915 30 H 0.105 0.895 31 H 0.127 0.873 32 H 0.063 0.937 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -1.318 12.771 -0.695 12.857 hybrid contribution -0.376 -0.933 0.252 1.036 sum -1.694 11.838 -0.443 11.967 Atomic orbital electron populations 1.22702 0.82566 1.01526 0.99989 1.88451 1.18803 1.27377 1.94817 1.21644 0.93649 0.83534 0.95165 1.22397 1.01816 1.00988 0.97589 1.22355 1.02188 1.00990 0.96995 1.21979 0.93763 1.00827 0.97993 1.22859 0.93596 0.86627 0.96699 0.91960 1.23133 0.95612 0.97083 1.02017 1.23203 0.99152 0.95398 1.00233 1.20308 0.83542 0.89030 0.92614 1.00130 1.21500 1.19802 1.05967 1.12567 0.92289 1.25908 0.95447 1.00805 0.95619 1.70248 1.20774 1.37173 1.24091 0.85640 0.78638 0.79181 0.78589 1.20376 1.20655 1.18711 1.88946 1.31521 1.13076 1.94501 0.92073 0.93661 0.92957 0.89415 0.91875 0.93428 0.93364 0.91544 0.89496 0.87338 0.93710 0.88596 0.90713 0.92030 0.91042 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.01 10.21 113.37 1.16 2.16 16 2 O -0.38 -16.36 8.68 -129.81 -1.13 -17.48 16 3 C 0.10 3.27 0.82 -10.79 -0.01 3.26 16 4 C -0.17 -4.71 7.91 71.98 0.57 -4.15 16 5 C -0.17 -4.30 8.08 71.98 0.58 -3.72 16 6 C -0.11 -3.69 4.12 30.59 0.13 -3.56 16 7 C 0.06 2.44 3.30 31.07 0.10 2.55 16 8 H 0.06 2.40 6.13 -2.38 -0.01 2.39 16 9 C -0.14 -4.90 6.54 31.86 0.21 -4.69 16 10 C -0.14 -6.08 6.53 32.05 0.21 -5.87 16 11 C 0.20 11.15 3.24 30.51 0.10 11.25 16 12 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 13 C -0.56 -33.57 8.80 25.60 0.23 -33.34 16 14 H 0.06 3.40 7.76 -2.91 -0.02 3.38 16 15 C 0.03 1.50 5.42 84.66 0.46 1.96 16 16 N -0.89 -56.22 12.98 21.45 0.28 -55.94 16 17 Si 0.95 46.16 29.54 68.60 2.03 48.19 16 18 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 19 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 21 O -0.36 -19.71 8.72 -129.81 -1.13 -20.85 16 22 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 23 H 0.04 1.40 6.42 -2.39 -0.02 1.39 16 24 H 0.05 1.51 6.54 -2.39 -0.02 1.50 16 25 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.06 1.58 6.54 -2.38 -0.02 1.57 16 27 H 0.05 1.53 6.29 -2.39 -0.02 1.52 16 28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.07 1.51 6.85 -2.39 -0.02 1.50 16 30 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16 32 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16 33 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 34 H 0.07 2.41 7.85 -2.39 -0.02 2.39 16 35 H 0.06 2.61 8.04 -2.38 -0.02 2.60 16 36 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 37 H 0.26 15.43 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -72.72 290.24 4.80 -67.92 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 1.02 Total: 12.32 kcal Atomic # 6 Polarization: -37.89 SS G_CDS: 3.73 Total: -34.16 kcal Atomic # 7 Polarization: -56.22 SS G_CDS: 0.28 Total: -55.94 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -2.26 Total: -38.33 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal Total: -72.72 4.80 -67.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308647856.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.427 kcal (2) G-P(sol) polarization free energy of solvation -72.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds