Wall clock time and date at job start Mon Mar 30 2020 03:13:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42898 * 1
3 3 C 1.42901 * 114.00076 * 2 1
4 4 C 1.52999 * 109.47226 * 59.99900 * 3 2 1
5 5 C 1.53001 * 109.46889 * 299.99745 * 3 2 1
6 6 C 1.52997 * 109.47227 * 179.97438 * 3 2 1
7 7 C 1.53005 * 109.47228 * 299.90946 * 6 3 2
8 8 H 1.09005 * 109.81786 * 306.46681 * 7 6 3
9 9 C 1.54386 * 109.83088 * 185.58608 * 7 6 3
10 10 C 1.55308 * 102.25012 * 219.12859 * 9 7 6
11 11 C 1.54941 * 100.94135 * 34.12968 * 10 9 7
12 12 H 1.09000 * 110.30629 * 82.57218 * 11 10 9
13 13 C 1.50699 * 110.30759 * 204.63932 * 11 10 9
14 14 H 1.07993 * 120.00342 * 358.61089 * 13 11 10
15 15 C 1.37885 * 119.99762 * 178.61412 * 13 11 10
16 16 N 1.31508 * 119.99971 * 359.72701 * 15 13 11
17 17 Si 1.86797 * 119.99677 * 180.02562 * 15 13 11
18 18 H 1.48497 * 109.47392 * 90.00044 * 17 15 13
19 19 H 1.48500 * 109.47137 * 209.99988 * 17 15 13
20 20 H 1.48504 * 109.47495 * 329.99793 * 17 15 13
21 21 O 1.43371 * 109.75317 * 67.46920 * 7 6 3
22 22 H 1.09002 * 109.47366 * 180.02562 * 1 2 3
23 23 H 1.09001 * 109.47332 * 300.00221 * 1 2 3
24 24 H 1.08998 * 109.46863 * 60.00235 * 1 2 3
25 25 H 1.09000 * 109.46964 * 180.02562 * 4 3 2
26 26 H 1.09004 * 109.47276 * 299.99753 * 4 3 2
27 27 H 1.08998 * 109.47235 * 60.00214 * 4 3 2
28 28 H 1.08998 * 109.46993 * 305.56832 * 5 3 2
29 29 H 1.08997 * 109.47301 * 65.57614 * 5 3 2
30 30 H 1.09002 * 109.46833 * 185.57210 * 5 3 2
31 31 H 1.09000 * 109.47839 * 179.90720 * 6 3 2
32 32 H 1.09009 * 109.47082 * 59.90743 * 6 3 2
33 33 H 1.09002 * 110.84610 * 100.93491 * 9 7 6
34 34 H 1.09001 * 110.84302 * 337.31752 * 9 7 6
35 35 H 1.09005 * 111.12004 * 276.21284 * 10 9 7
36 36 H 1.09000 * 111.15805 * 152.06846 * 10 9 7
37 37 H 0.97002 * 119.99957 * 180.02562 * 16 15 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 1.5588 2.0648 1.2492
5 6 1.5588 2.0647 -1.2493
6 6 3.5354 1.1847 0.0006
7 6 3.9866 0.4276 1.2514
8 1 3.5709 0.9018 2.1405
9 6 5.5283 0.4224 1.3329
10 6 5.8262 -1.0118 1.8488
11 6 4.6899 -1.8125 1.1645
12 1 4.9663 -2.0610 0.1398
13 6 4.3916 -3.0674 1.9438
14 1 4.9627 -3.3013 2.8300
15 6 3.3895 -3.9170 1.5252
16 7 2.6905 -3.6295 0.4490
17 14 3.0193 -5.4721 2.4916
18 1 1.9974 -5.1792 3.5284
19 1 2.5044 -6.5167 1.5703
20 1 4.2620 -5.9569 3.1445
21 8 3.5516 -0.9364 1.1754
22 1 -0.3634 -1.0277 0.0005
23 1 -0.3634 0.5139 0.8900
24 1 -0.3633 0.5138 -0.8900
25 1 2.0018 3.0607 1.2489
26 1 0.4721 2.1509 1.2492
27 1 1.8804 1.5239 2.1392
28 1 1.7927 1.4761 -2.1364
29 1 0.4837 2.2374 -1.2008
30 1 2.0785 3.0214 -1.3006
31 1 3.9789 2.1804 -0.0010
32 1 3.8573 0.6421 -0.8884
33 1 5.8817 1.1711 2.0419
34 1 5.9692 0.5800 0.3486
35 1 5.7444 -1.0635 2.9346
36 1 6.8052 -1.3549 1.5143
37 1 1.9853 -4.2270 0.1548
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308647856.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:13:59
Heat of formation + Delta-G solvation = -119.344698 kcal
Electronic energy + Delta-G solvation = -17326.348604 eV
Core-core repulsion = 14681.885561 eV
Total energy + Delta-G solvation = -2644.463043 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 228.151 amu
Computer time = 0.29 seconds
Orbital eigenvalues (eV)
-40.39289 -39.03257 -34.96892 -34.09219 -32.42859 -30.97295 -28.37751 -28.26374
-27.22574 -25.06935 -22.09409 -21.75967 -20.38665 -18.55112 -17.49752 -16.80346
-16.58042 -16.25282 -16.10077 -15.65253 -14.76869 -14.38766 -14.10652 -13.89058
-13.68801 -13.51554 -13.17208 -12.86365 -12.80194 -12.61127 -12.50231 -12.35075
-12.18640 -12.01899 -11.97108 -11.67855 -11.28461 -10.92916 -10.86977 -10.59818
-10.20656 -9.53161 -8.02925 -6.24725 1.40158 1.42182 1.52066 2.44882
3.12458 3.20262 3.67912 3.88509 4.01796 4.07624 4.24803 4.32413
4.44196 4.47110 4.57089 4.64877 4.71758 4.75425 4.81155 4.89144
4.91998 4.94382 4.97030 5.01479 5.13144 5.18534 5.21322 5.34424
5.43848 5.55708 5.69285 5.84213 6.29510 6.71748 6.76023 7.27735
7.51011 9.02743
Molecular weight = 228.15amu
Principal moments of inertia in cm(-1)
A = 0.026530 B = 0.009896 C = 0.007827
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1055.159788 B = 2828.710919 C = 3576.719402
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.029 3.971
2 O -0.376 6.376
3 C 0.099 3.901
4 C -0.171 4.171
5 C -0.168 4.168
6 C -0.108 4.108
7 C 0.061 3.939
8 H 0.063 0.937
9 C -0.141 4.141
10 C -0.142 4.142
11 C 0.201 3.799
12 H -0.019 1.019
13 C -0.561 4.561
14 H 0.059 0.941
15 C 0.025 3.975
16 N -0.886 5.886
17 Si 0.955 3.045
18 H -0.278 1.278
19 H -0.281 1.281
20 H -0.263 1.263
21 O -0.361 6.361
22 H 0.061 0.939
23 H 0.045 0.955
24 H 0.052 0.948
25 H 0.087 0.913
26 H 0.062 0.938
27 H 0.047 0.953
28 H 0.047 0.953
29 H 0.066 0.934
30 H 0.086 0.914
31 H 0.108 0.892
32 H 0.044 0.956
33 H 0.096 0.904
34 H 0.074 0.926
35 H 0.061 0.939
36 H 0.071 0.929
37 H 0.257 0.743
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.083 13.053 -0.555 13.110
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.068 4.068
2 O -0.294 6.294
3 C 0.060 3.940
4 C -0.228 4.228
5 C -0.225 4.225
6 C -0.146 4.146
7 C 0.002 3.998
8 H 0.080 0.920
9 C -0.178 4.178
10 C -0.180 4.180
11 C 0.145 3.855
12 H -0.001 1.001
13 C -0.598 4.598
14 H 0.077 0.923
15 C -0.178 4.178
16 N -0.523 5.523
17 Si 0.780 3.220
18 H -0.204 1.204
19 H -0.207 1.207
20 H -0.187 1.187
21 O -0.280 6.280
22 H 0.079 0.921
23 H 0.063 0.937
24 H 0.070 0.930
25 H 0.106 0.894
26 H 0.081 0.919
27 H 0.066 0.934
28 H 0.066 0.934
29 H 0.085 0.915
30 H 0.105 0.895
31 H 0.127 0.873
32 H 0.063 0.937
33 H 0.114 0.886
34 H 0.093 0.907
35 H 0.080 0.920
36 H 0.090 0.910
37 H 0.066 0.934
Dipole moment (debyes) X Y Z Total
from point charges -1.318 12.771 -0.695 12.857
hybrid contribution -0.376 -0.933 0.252 1.036
sum -1.694 11.838 -0.443 11.967
Atomic orbital electron populations
1.22702 0.82566 1.01526 0.99989 1.88451 1.18803 1.27377 1.94817
1.21644 0.93649 0.83534 0.95165 1.22397 1.01816 1.00988 0.97589
1.22355 1.02188 1.00990 0.96995 1.21979 0.93763 1.00827 0.97993
1.22859 0.93596 0.86627 0.96699 0.91960 1.23133 0.95612 0.97083
1.02017 1.23203 0.99152 0.95398 1.00233 1.20308 0.83542 0.89030
0.92614 1.00130 1.21500 1.19802 1.05967 1.12567 0.92289 1.25908
0.95447 1.00805 0.95619 1.70248 1.20774 1.37173 1.24091 0.85640
0.78638 0.79181 0.78589 1.20376 1.20655 1.18711 1.88946 1.31521
1.13076 1.94501 0.92073 0.93661 0.92957 0.89415 0.91875 0.93428
0.93364 0.91544 0.89496 0.87338 0.93710 0.88596 0.90713 0.92030
0.91042 0.93429
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 1.01 10.21 113.37 1.16 2.16 16
2 O -0.38 -16.36 8.68 -129.81 -1.13 -17.48 16
3 C 0.10 3.27 0.82 -10.79 -0.01 3.26 16
4 C -0.17 -4.71 7.91 71.98 0.57 -4.15 16
5 C -0.17 -4.30 8.08 71.98 0.58 -3.72 16
6 C -0.11 -3.69 4.12 30.59 0.13 -3.56 16
7 C 0.06 2.44 3.30 31.07 0.10 2.55 16
8 H 0.06 2.40 6.13 -2.38 -0.01 2.39 16
9 C -0.14 -4.90 6.54 31.86 0.21 -4.69 16
10 C -0.14 -6.08 6.53 32.05 0.21 -5.87 16
11 C 0.20 11.15 3.24 30.51 0.10 11.25 16
12 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16
13 C -0.56 -33.57 8.80 25.60 0.23 -33.34 16
14 H 0.06 3.40 7.76 -2.91 -0.02 3.38 16
15 C 0.03 1.50 5.42 84.66 0.46 1.96 16
16 N -0.89 -56.22 12.98 21.45 0.28 -55.94 16
17 Si 0.95 46.16 29.54 68.60 2.03 48.19 16
18 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16
19 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16
20 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16
21 O -0.36 -19.71 8.72 -129.81 -1.13 -20.85 16
22 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16
23 H 0.04 1.40 6.42 -2.39 -0.02 1.39 16
24 H 0.05 1.51 6.54 -2.39 -0.02 1.50 16
25 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16
26 H 0.06 1.58 6.54 -2.38 -0.02 1.57 16
27 H 0.05 1.53 6.29 -2.39 -0.02 1.52 16
28 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16
29 H 0.07 1.51 6.85 -2.39 -0.02 1.50 16
30 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16
31 H 0.11 2.73 8.14 -2.39 -0.02 2.71 16
32 H 0.04 1.74 8.14 -2.38 -0.02 1.72 16
33 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16
34 H 0.07 2.41 7.85 -2.39 -0.02 2.39 16
35 H 0.06 2.61 8.04 -2.38 -0.02 2.60 16
36 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16
37 H 0.26 15.43 8.31 -92.71 -0.77 14.65 16
Total: -1.00 -72.72 290.24 4.80 -67.92
By element:
Atomic # 1 Polarization: 11.30 SS G_CDS: 1.02 Total: 12.32 kcal
Atomic # 6 Polarization: -37.89 SS G_CDS: 3.73 Total: -34.16 kcal
Atomic # 7 Polarization: -56.22 SS G_CDS: 0.28 Total: -55.94 kcal
Atomic # 8 Polarization: -36.07 SS G_CDS: -2.26 Total: -38.33 kcal
Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.19 kcal
Total: -72.72 4.80 -67.92 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308647856.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -51.427 kcal
(2) G-P(sol) polarization free energy of solvation -72.716 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.142 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.798 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.918 kcal
(6) G-S(sol) free energy of system = (1) + (5) -119.345 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.29 seconds