Wall clock time and date at job start Mon Mar 30 2020 03:10:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42898 * 114.00064 * 2 1 4 4 C 1.53003 * 109.46832 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.47063 * 185.30462 * 4 3 2 6 6 C 1.53002 * 109.47888 * 299.73844 * 5 4 3 7 7 C 1.53096 * 109.47996 * 179.71501 * 5 4 3 8 8 C 1.53176 * 109.16294 * 297.62604 * 7 5 4 9 9 C 1.53179 * 109.03440 * 303.01991 * 8 7 5 10 10 C 1.53089 * 109.16273 * 56.98403 * 9 8 7 11 11 H 1.08996 * 109.48517 * 62.38622 * 10 9 8 12 12 C 1.50709 * 109.47732 * 182.40803 * 10 9 8 13 13 H 1.07997 * 120.00003 * 94.92262 * 12 10 9 14 14 C 1.37882 * 119.99790 * 274.91962 * 12 10 9 15 15 N 1.31517 * 119.99760 * 4.98240 * 14 12 10 16 16 Si 1.86801 * 119.99832 * 185.25212 * 14 12 10 17 17 H 1.48489 * 109.47078 * 269.72751 * 16 14 12 18 18 H 1.48499 * 109.46917 * 29.72977 * 16 14 12 19 19 H 1.48497 * 109.46882 * 149.72314 * 16 14 12 20 20 O 1.42898 * 109.47028 * 59.76740 * 5 4 3 21 21 H 1.09003 * 109.47137 * 60.00216 * 1 2 3 22 22 H 1.08999 * 109.47650 * 180.02562 * 1 2 3 23 23 H 1.09005 * 109.47548 * 300.00585 * 1 2 3 24 24 H 1.08995 * 109.47349 * 60.00149 * 3 2 1 25 25 H 1.08999 * 109.47404 * 299.99532 * 3 2 1 26 26 H 1.08995 * 109.47597 * 65.30502 * 4 3 2 27 27 H 1.09003 * 109.47208 * 305.30115 * 4 3 2 28 28 H 1.08994 * 109.47034 * 299.97748 * 6 5 4 29 29 H 1.08997 * 109.47307 * 59.97816 * 6 5 4 30 30 H 1.09004 * 109.46871 * 179.97438 * 6 5 4 31 31 H 1.08996 * 109.51761 * 177.72031 * 7 5 4 32 32 H 1.09002 * 109.52087 * 57.53433 * 7 5 4 33 33 H 1.09002 * 109.53730 * 183.15335 * 8 7 5 34 34 H 1.08993 * 109.61584 * 62.93510 * 8 7 5 35 35 H 1.08998 * 109.52098 * 297.07288 * 9 8 7 36 36 H 1.09005 * 109.56989 * 176.91850 * 9 8 7 37 37 H 0.96996 * 120.00055 * 355.28147 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 0.0006 5 6 4.1573 2.5761 0.1340 6 6 3.7206 3.4454 -1.0469 7 6 5.6834 2.4547 0.1418 8 6 6.1162 1.6335 1.3602 9 6 5.5797 2.3021 2.6296 10 6 4.0577 2.4293 2.5257 11 1 3.6133 1.4361 2.4622 12 6 3.5283 3.1397 3.7449 13 1 3.3621 4.2065 3.7186 14 6 3.2563 2.4276 4.8938 15 7 3.5501 1.1473 4.9590 16 14 2.4636 3.2796 6.3551 17 1 3.5211 3.8218 7.2454 18 1 1.6041 4.3908 5.8736 19 1 1.6353 2.3036 7.1076 20 8 3.7221 3.1772 1.3552 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8899 24 1 1.6886 1.8463 0.8899 25 1 1.6887 1.8464 -0.8900 26 1 3.8641 0.7277 -0.9327 27 1 3.8504 0.5639 0.8396 28 1 4.0533 2.9869 -1.9781 29 1 2.6340 3.5317 -1.0523 30 1 4.1633 4.4369 -0.9515 31 1 6.1275 3.4486 0.1960 32 1 6.0138 1.9563 -0.7695 33 1 7.2046 1.5904 1.4028 34 1 5.7141 0.6234 1.2822 35 1 6.0218 3.2929 2.7341 36 1 5.8361 1.6954 3.4982 37 1 3.8944 0.6883 4.1770 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308652070.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:20 Heat of formation + Delta-G solvation = -137.057577 kcal Electronic energy + Delta-G solvation = -17290.849404 eV Core-core repulsion = 14645.618273 eV Total energy + Delta-G solvation = -2645.231131 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.02865 -38.70239 -35.95700 -34.46389 -33.81500 -30.93508 -28.75578 -27.30153 -26.89659 -24.77498 -23.69824 -22.44807 -20.00544 -19.15164 -17.69350 -17.22602 -16.75968 -16.26363 -16.02861 -15.68441 -15.30796 -15.11947 -14.72696 -14.51495 -13.67118 -13.52346 -13.36638 -13.04639 -12.80392 -12.76048 -12.65980 -12.31996 -12.20516 -12.00001 -11.95712 -11.85458 -11.77323 -11.11302 -10.73159 -10.65001 -10.40861 -9.96099 -8.72667 -6.43338 1.49257 1.58897 1.77652 2.48664 2.72028 3.03571 3.30879 3.78567 3.81870 4.04478 4.09203 4.15411 4.23286 4.40906 4.41636 4.46568 4.49370 4.56266 4.65373 4.74548 4.76757 4.83377 4.89946 4.92722 5.01214 5.04898 5.11848 5.21662 5.28048 5.41246 5.53490 5.92917 6.07802 6.16799 6.45966 6.89638 7.37150 8.66620 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.020388 B = 0.010512 C = 0.008129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.028419 B = 2662.991898 C = 3443.437029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.419 6.419 3 C 0.071 3.929 4 C -0.136 4.136 5 C 0.100 3.900 6 C -0.133 4.133 7 C -0.129 4.129 8 C -0.122 4.122 9 C -0.134 4.134 10 C 0.210 3.790 11 H -0.004 1.004 12 C -0.609 4.609 13 H 0.043 0.957 14 C -0.024 4.024 15 N -0.928 5.928 16 Si 1.119 2.881 17 H -0.269 1.269 18 H -0.273 1.273 19 H -0.279 1.279 20 O -0.394 6.394 21 H 0.061 0.939 22 H 0.102 0.898 23 H 0.030 0.970 24 H 0.022 0.978 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.046 0.954 28 H 0.098 0.902 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.053 0.947 35 H 0.045 0.955 36 H 0.035 0.965 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.644 0.767 -12.380 12.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.338 6.338 3 C -0.005 4.005 4 C -0.174 4.174 5 C 0.060 3.940 6 C -0.190 4.190 7 C -0.167 4.167 8 C -0.159 4.159 9 C -0.172 4.172 10 C 0.153 3.847 11 H 0.014 0.986 12 C -0.647 4.647 13 H 0.061 0.939 14 C -0.222 4.222 15 N -0.565 5.565 16 Si 0.940 3.060 17 H -0.195 1.195 18 H -0.199 1.199 19 H -0.204 1.204 20 O -0.315 6.315 21 H 0.080 0.920 22 H 0.121 0.879 23 H 0.049 0.951 24 H 0.041 0.959 25 H 0.091 0.909 26 H 0.116 0.884 27 H 0.065 0.935 28 H 0.117 0.883 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.117 0.883 33 H 0.094 0.906 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.054 0.946 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -1.115 0.543 -10.831 10.901 hybrid contribution 0.448 0.011 -1.109 1.196 sum -0.667 0.554 -11.940 11.971 Atomic orbital electron populations 1.22919 0.79678 1.03901 1.00505 1.87789 1.21558 1.28932 1.95556 1.22453 0.94121 0.83952 1.00015 1.22086 0.93916 0.98371 1.03034 1.21687 0.93689 0.91903 0.86702 1.21813 1.01841 0.99667 0.95631 1.22098 0.94919 1.00978 0.98698 1.21694 1.00873 0.98721 0.94662 1.22106 0.98806 0.99221 0.97083 1.19614 0.90978 0.90870 0.83253 0.98640 1.22191 1.47973 0.95909 0.98617 0.93864 1.27312 0.94816 0.95994 1.04111 1.70884 1.42931 1.10891 1.31831 0.82918 0.76414 0.74506 0.72143 1.19450 1.19851 1.20395 1.87950 1.79540 1.49888 1.14087 0.92041 0.87914 0.95116 0.95914 0.90899 0.88397 0.93497 0.88324 0.92345 0.91875 0.91224 0.88306 0.90559 0.92801 0.93568 0.94634 0.93190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.42 -15.13 10.70 -148.98 -1.59 -16.73 16 3 C 0.07 2.56 5.36 71.98 0.39 2.94 16 4 C -0.14 -4.83 3.94 30.60 0.12 -4.71 16 5 C 0.10 3.54 0.79 -10.76 -0.01 3.53 16 6 C -0.13 -3.60 8.50 71.98 0.61 -2.98 16 7 C -0.13 -4.07 4.92 30.69 0.15 -3.92 16 8 C -0.12 -4.48 5.71 30.71 0.18 -4.31 16 9 C -0.13 -6.39 5.33 30.68 0.16 -6.22 16 10 C 0.21 11.20 1.94 29.88 0.06 11.26 16 11 H 0.00 -0.23 5.12 -2.39 -0.01 -0.24 16 12 C -0.61 -36.34 8.69 25.60 0.22 -36.12 16 13 H 0.04 2.62 7.82 -2.91 -0.02 2.60 16 14 C -0.02 -1.41 5.45 84.66 0.46 -0.94 16 15 N -0.93 -57.58 13.63 21.45 0.29 -57.29 16 16 Si 1.12 51.57 29.91 68.60 2.05 53.62 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 O -0.39 -18.91 9.09 -148.98 -1.35 -20.27 16 21 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 22 H 0.10 2.33 8.14 -2.39 -0.02 2.31 16 23 H 0.03 0.90 8.14 -2.38 -0.02 0.88 16 24 H 0.02 1.00 7.52 -2.39 -0.02 0.98 16 25 H 0.07 2.16 6.73 -2.39 -0.02 2.15 16 26 H 0.10 2.81 8.14 -2.39 -0.02 2.79 16 27 H 0.05 1.97 4.98 -2.39 -0.01 1.96 16 28 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.06 1.60 6.56 -2.39 -0.02 1.58 16 30 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 31 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 32 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 34 H 0.05 2.01 6.62 -2.39 -0.02 2.00 16 35 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.03 1.84 7.79 -2.38 -0.02 1.82 16 37 H 0.26 16.23 6.35 -92.71 -0.59 15.64 16 Total: -1.00 -69.78 287.19 4.19 -65.59 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 1.21 Total: 14.61 kcal Atomic # 6 Polarization: -43.12 SS G_CDS: 3.59 Total: -39.53 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: 0.29 Total: -57.29 kcal Atomic # 8 Polarization: -34.05 SS G_CDS: -2.95 Total: -37.00 kcal Atomic # 14 Polarization: 51.57 SS G_CDS: 2.05 Total: 53.62 kcal Total: -69.78 4.19 -65.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308652070.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.467 kcal (2) G-P(sol) polarization free energy of solvation -69.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds