Wall clock time and date at job start Mon Mar 30 2020 03:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47518 * 2 1 4 4 C 1.53004 * 109.82194 * 179.56344 * 3 2 1 5 5 O 1.42894 * 109.47141 * 301.33704 * 4 3 2 6 6 C 1.42905 * 113.99474 * 180.02562 * 5 4 3 7 7 C 1.54373 * 109.82906 * 300.45509 * 3 2 1 8 8 C 1.55306 * 102.25422 * 98.24730 * 7 3 2 9 9 C 1.54949 * 100.94386 * 34.12977 * 8 7 3 10 10 C 1.53000 * 110.30828 * 82.46752 * 9 8 7 11 11 C 1.50699 * 110.31040 * 204.64154 * 9 8 7 12 12 H 1.08000 * 119.99974 * 359.97438 * 11 9 8 13 13 C 1.37876 * 119.99835 * 179.97438 * 11 9 8 14 14 N 1.31523 * 120.00097 * 0.02562 * 13 11 9 15 15 Si 1.86801 * 120.00151 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.46881 * 89.99851 * 15 13 11 17 17 H 1.48497 * 109.47262 * 210.00183 * 15 13 11 18 18 H 1.48499 * 109.46948 * 330.00222 * 15 13 11 19 19 O 1.43238 * 109.90157 * 58.63350 * 3 2 1 20 20 H 1.08999 * 109.46908 * 66.20514 * 1 2 3 21 21 H 1.08998 * 109.47548 * 186.21124 * 1 2 3 22 22 H 1.09005 * 109.46688 * 306.20843 * 1 2 3 23 23 H 1.08998 * 109.46773 * 239.99526 * 2 1 3 24 24 H 1.09002 * 109.46784 * 120.00530 * 2 1 3 25 25 H 1.09002 * 109.46779 * 181.33493 * 4 3 2 26 26 H 1.08995 * 109.46766 * 61.33767 * 4 3 2 27 27 H 1.08997 * 109.46797 * 299.99272 * 6 5 4 28 28 H 1.09006 * 109.46685 * 179.97438 * 6 5 4 29 29 H 1.08996 * 109.47540 * 59.99887 * 6 5 4 30 30 H 1.09005 * 110.84266 * 216.43220 * 7 3 2 31 31 H 1.09003 * 110.85413 * 340.05469 * 7 3 2 32 32 H 1.09004 * 111.12705 * 152.04662 * 8 7 3 33 33 H 1.08994 * 111.12439 * 276.17177 * 8 7 3 34 34 H 1.09007 * 109.46794 * 60.00473 * 10 9 8 35 35 H 1.09003 * 109.47292 * 179.97438 * 10 9 8 36 36 H 1.08999 * 109.47573 * 300.00315 * 10 9 8 37 37 H 0.96999 * 120.00132 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4517 0.0110 5 8 4.0423 0.7569 1.1668 6 6 5.4665 0.7077 1.2738 7 6 1.5207 2.1815 -1.2518 8 6 0.2927 2.9516 -0.6942 9 6 0.7788 3.2817 0.7396 10 6 1.6622 4.5308 0.7264 11 6 -0.3991 3.4823 1.6580 12 1 -1.4045 3.3882 1.2751 13 6 -0.1930 3.7859 2.9870 14 7 1.0314 3.9010 3.4532 15 14 -1.6530 4.0352 4.1254 16 1 -2.0309 2.7361 4.7375 17 1 -1.2880 4.9988 5.1947 18 1 -2.8007 4.5690 3.3488 19 8 1.5417 2.1359 1.1500 20 1 -0.3633 0.4146 -0.9403 21 1 -0.3634 -1.0216 0.1112 22 1 -0.3633 0.6071 0.8293 23 1 1.8933 -0.5139 -0.8899 24 1 1.8933 -0.5139 0.8900 25 1 3.9269 2.4814 0.0349 26 1 3.9428 0.9587 -0.8868 27 1 5.8789 0.1994 0.4022 28 1 5.7444 0.1643 2.1769 29 1 5.8624 1.7219 1.3241 30 1 2.2718 2.8733 -1.6333 31 1 1.2170 1.4731 -2.0226 32 1 0.1071 3.8614 -1.2652 33 1 -0.5927 2.3164 -0.6729 34 1 1.0912 5.3756 0.3410 35 1 1.9958 4.7507 1.7406 36 1 2.5285 4.3565 0.0883 37 1 1.1764 4.1150 4.3881 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308697195.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:04 Heat of formation + Delta-G solvation = -117.564921 kcal Electronic energy + Delta-G solvation = -17623.845078 eV Core-core repulsion = 14979.459211 eV Total energy + Delta-G solvation = -2644.385866 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.85481 -38.34092 -35.48038 -33.71961 -32.66309 -30.78676 -29.20807 -27.38515 -26.88486 -24.48742 -23.68359 -21.37175 -20.34934 -18.40120 -17.15531 -17.06634 -16.72622 -16.50819 -16.04170 -15.38225 -14.91945 -14.28244 -14.20553 -13.85058 -13.52319 -13.40860 -13.04651 -12.85535 -12.58483 -12.54241 -12.47836 -12.25248 -12.16873 -12.00766 -11.86745 -11.76506 -11.31063 -10.87559 -10.81227 -10.51117 -10.44816 -9.61687 -7.98073 -6.20657 1.41433 1.43164 1.51922 2.45662 2.94571 3.16293 3.68742 3.90981 4.06283 4.18426 4.32889 4.43060 4.47097 4.54321 4.57166 4.60731 4.74329 4.79197 4.83909 4.96155 4.98612 5.02278 5.07394 5.10428 5.19857 5.31708 5.38717 5.54227 5.57856 5.66761 5.75532 6.22194 6.38649 6.42337 6.76000 7.30548 7.55023 9.01988 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.026170 B = 0.010311 C = 0.009303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.687138 B = 2714.956902 C = 3008.925574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.109 4.109 3 C 0.087 3.913 4 C 0.066 3.934 5 O -0.407 6.407 6 C 0.026 3.974 7 C -0.132 4.132 8 C -0.139 4.139 9 C 0.218 3.782 10 C -0.140 4.140 11 C -0.537 4.537 12 H 0.056 0.944 13 C 0.031 3.969 14 N -0.889 5.889 15 Si 0.946 3.054 16 H -0.282 1.282 17 H -0.284 1.284 18 H -0.264 1.264 19 O -0.366 6.366 20 H 0.063 0.937 21 H 0.058 0.942 22 H 0.035 0.965 23 H 0.085 0.915 24 H 0.045 0.955 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.059 0.941 28 H 0.090 0.910 29 H 0.035 0.965 30 H 0.075 0.925 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.036 0.964 35 H 0.057 0.943 36 H 0.025 0.975 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.348 -5.272 -9.425 11.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.146 4.146 3 C 0.046 3.954 4 C -0.011 4.011 5 O -0.326 6.326 6 C -0.070 4.070 7 C -0.169 4.169 8 C -0.177 4.177 9 C 0.180 3.820 10 C -0.198 4.198 11 C -0.574 4.574 12 H 0.074 0.926 13 C -0.171 4.171 14 N -0.527 5.527 15 Si 0.772 3.228 16 H -0.208 1.208 17 H -0.210 1.210 18 H -0.188 1.188 19 O -0.286 6.286 20 H 0.082 0.918 21 H 0.077 0.923 22 H 0.054 0.946 23 H 0.103 0.897 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.093 0.907 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.054 0.946 30 H 0.093 0.907 31 H 0.117 0.883 32 H 0.089 0.911 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.076 0.924 36 H 0.044 0.956 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.368 -5.362 -8.924 11.290 hybrid contribution -0.336 0.545 0.757 0.991 sum 4.032 -4.817 -8.167 10.303 Atomic orbital electron populations 1.21744 0.95690 1.00922 1.01720 1.21599 0.96373 0.95113 1.01533 1.22285 0.91048 0.93914 0.88117 1.22995 0.94958 0.95112 0.88036 1.87970 1.22303 1.76485 1.45878 1.22876 0.80596 1.00789 1.02731 1.23038 0.97723 0.99382 0.96756 1.23307 0.97799 0.99788 0.96766 1.19914 0.88235 0.83493 0.90333 1.22017 0.97839 0.98599 1.01372 1.21371 0.92308 1.48651 0.95100 0.92578 1.25737 0.97593 0.94074 0.99704 1.70114 1.21090 1.47231 1.14241 0.85771 0.80495 0.77657 0.78926 1.20813 1.20966 1.18831 1.88845 1.70125 1.41163 1.28437 0.91822 0.92341 0.94563 0.89655 0.93637 0.94880 0.90656 0.92205 0.89180 0.94593 0.90671 0.88345 0.91140 0.91328 0.94475 0.92397 0.95606 0.93540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.03 8.36 71.98 0.60 -4.43 16 2 C -0.11 -3.83 4.93 30.59 0.15 -3.68 16 3 C 0.09 3.41 0.85 -10.33 -0.01 3.40 16 4 C 0.07 2.34 4.95 71.98 0.36 2.70 16 5 O -0.41 -15.93 9.93 -142.55 -1.42 -17.35 16 6 C 0.03 0.74 11.01 113.37 1.25 1.99 16 7 C -0.13 -4.35 5.17 31.85 0.16 -4.19 16 8 C -0.14 -5.52 5.41 32.05 0.17 -5.35 16 9 C 0.22 10.90 0.73 -10.87 -0.01 10.89 16 10 C -0.14 -6.97 8.62 71.98 0.62 -6.34 16 11 C -0.54 -29.99 8.30 25.60 0.21 -29.77 16 12 H 0.06 3.07 7.76 -2.91 -0.02 3.05 16 13 C 0.03 1.76 5.28 84.65 0.45 2.21 16 14 N -0.89 -53.47 10.97 21.45 0.24 -53.23 16 15 Si 0.95 44.82 29.54 68.60 2.03 46.85 16 16 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 17 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 18 H -0.26 -11.93 7.11 99.48 0.71 -11.23 16 19 O -0.37 -19.00 8.85 -142.55 -1.26 -20.26 16 20 H 0.06 1.97 6.05 -2.39 -0.01 1.96 16 21 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.04 1.58 7.39 -2.38 -0.02 1.57 16 23 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 24 H 0.04 1.80 7.66 -2.39 -0.02 1.78 16 25 H 0.03 1.25 7.92 -2.39 -0.02 1.23 16 26 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 27 H 0.06 1.32 8.14 -2.39 -0.02 1.31 16 28 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.07 2.29 7.53 -2.38 -0.02 2.28 16 31 H 0.10 2.61 7.36 -2.39 -0.02 2.59 16 32 H 0.07 2.59 8.03 -2.38 -0.02 2.57 16 33 H 0.07 2.72 6.02 -2.39 -0.01 2.70 16 34 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 35 H 0.06 3.28 5.93 -2.39 -0.01 3.27 16 36 H 0.02 1.13 7.30 -2.39 -0.02 1.11 16 37 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 Total: -1.00 -67.00 288.46 4.56 -62.43 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 1.02 Total: 14.14 kcal Atomic # 6 Polarization: -36.54 SS G_CDS: 3.96 Total: -32.58 kcal Atomic # 7 Polarization: -53.47 SS G_CDS: 0.24 Total: -53.23 kcal Atomic # 8 Polarization: -34.93 SS G_CDS: -2.68 Total: -37.61 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.85 kcal Total: -67.00 4.56 -62.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308697195.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.134 kcal (2) G-P(sol) polarization free energy of solvation -66.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds