Wall clock time and date at job start Mon Mar 30 2020 03:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47222 * 2 1 4 4 C 1.53001 * 109.82031 * 63.63482 * 3 2 1 5 5 O 1.42898 * 109.46987 * 55.93094 * 4 3 2 6 6 C 1.42898 * 114.00101 * 179.97438 * 5 4 3 7 7 C 1.54382 * 109.82864 * 302.75106 * 3 2 1 8 8 C 1.55305 * 102.25144 * 219.03733 * 7 3 2 9 9 C 1.54950 * 100.93995 * 34.13521 * 8 7 3 10 10 C 1.52998 * 110.30988 * 82.47029 * 9 8 7 11 11 C 1.50703 * 110.30656 * 204.53853 * 9 8 7 12 12 H 1.08000 * 119.99700 * 359.97438 * 11 9 8 13 13 C 1.37867 * 119.99989 * 179.97438 * 11 9 8 14 14 N 1.31517 * 120.00093 * 180.02562 * 13 11 9 15 15 Si 1.86801 * 120.00081 * 0.02562 * 13 11 9 16 16 H 1.48506 * 109.47114 * 90.00140 * 15 13 11 17 17 H 1.48502 * 109.47286 * 210.00251 * 15 13 11 18 18 H 1.48498 * 109.47125 * 329.99855 * 15 13 11 19 19 O 1.43231 * 109.90639 * 184.57274 * 3 2 1 20 20 H 1.08996 * 109.46762 * 64.31171 * 1 2 3 21 21 H 1.09001 * 109.46878 * 184.31019 * 1 2 3 22 22 H 1.09003 * 109.47477 * 304.31038 * 1 2 3 23 23 H 1.08996 * 109.47413 * 239.99693 * 2 1 3 24 24 H 1.08999 * 109.47355 * 119.99450 * 2 1 3 25 25 H 1.08991 * 109.47564 * 295.92555 * 4 3 2 26 26 H 1.08999 * 109.46545 * 175.92389 * 4 3 2 27 27 H 1.09000 * 109.47782 * 179.97438 * 6 5 4 28 28 H 1.09003 * 109.46755 * 300.00074 * 6 5 4 29 29 H 1.09002 * 109.47413 * 59.98961 * 6 5 4 30 30 H 1.09008 * 110.84551 * 337.22863 * 7 3 2 31 31 H 1.08995 * 110.84608 * 100.84622 * 7 3 2 32 32 H 1.09002 * 111.12085 * 152.04951 * 8 7 3 33 33 H 1.08993 * 111.12300 * 276.21486 * 8 7 3 34 34 H 1.09006 * 109.47319 * 59.99886 * 10 9 8 35 35 H 1.08999 * 109.47420 * 179.97438 * 10 9 8 36 36 H 1.08999 * 109.46996 * 299.99530 * 10 9 8 37 37 H 0.97000 * 119.99936 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6103 2.1448 1.2897 5 8 2.0754 1.3985 2.4160 6 6 1.7260 1.9717 3.6775 7 6 1.4738 2.1982 -1.2214 8 6 2.6845 3.0649 -1.6630 9 6 3.8637 2.1210 -1.3170 10 6 4.0758 1.1029 -2.4391 11 6 5.1224 2.9181 -1.0902 12 1 5.1037 3.9942 -1.1800 13 6 6.2978 2.2735 -0.7681 14 7 7.3962 2.9691 -0.5697 15 14 6.3303 0.4122 -0.6136 16 1 6.6527 -0.1885 -1.9329 17 1 7.3635 0.0156 0.3767 18 1 5.0006 -0.0703 -0.1616 19 8 3.4682 1.4548 -0.1074 20 1 -0.3633 0.4455 -0.9261 21 1 -0.3633 -1.0248 0.0772 22 1 -0.3634 0.5793 0.8488 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5137 0.8900 25 1 0.5229 2.2116 1.3220 26 1 2.0370 3.1474 1.3168 27 1 2.1148 1.3463 4.4811 28 1 2.1554 2.9707 3.7540 29 1 0.6410 2.0355 3.7596 30 1 1.1872 1.5019 -2.0096 31 1 0.6316 2.8268 -0.9324 32 1 2.6491 3.2735 -2.7323 33 1 2.7379 3.9881 -1.0860 34 1 4.3006 1.6273 -3.3679 35 1 4.9076 0.4470 -2.1822 36 1 3.1706 0.5092 -2.5669 37 1 8.2231 2.5156 -0.3428 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308697197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:06 Heat of formation + Delta-G solvation = -90.329801 kcal Electronic energy + Delta-G solvation = -17608.295585 eV Core-core repulsion = 14965.090722 eV Total energy + Delta-G solvation = -2643.204863 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.50173 -37.07333 -34.10535 -32.28210 -31.27414 -29.70718 -27.62114 -25.70363 -25.18063 -23.77866 -22.56314 -19.50369 -18.97684 -16.56372 -16.11403 -15.92922 -15.41128 -14.72272 -14.31545 -14.12314 -13.64514 -13.10941 -12.85101 -12.47053 -12.19967 -12.02985 -11.89468 -11.66953 -11.50980 -11.22446 -11.06718 -10.86597 -10.66464 -10.26679 -10.02073 -9.98243 -9.85277 -9.39976 -9.24839 -8.88301 -8.49436 -8.12931 -6.05274 -4.12936 3.41737 3.53980 3.77652 4.13876 4.58998 4.72225 5.17382 5.23456 5.39835 5.42594 5.50534 5.54063 5.64981 5.69018 5.72987 5.75951 5.87311 5.90004 6.04375 6.09860 6.21566 6.22782 6.31247 6.43310 6.52422 6.56181 6.70576 6.76755 6.82992 6.85142 7.30611 7.56257 7.74075 8.46193 8.51242 8.95718 9.60222 11.05411 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.025688 B = 0.011423 C = 0.010157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.760515 B = 2450.701287 C = 2755.928321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C 0.106 3.894 4 C 0.066 3.934 5 O -0.374 6.374 6 C 0.032 3.968 7 C -0.144 4.144 8 C -0.130 4.130 9 C 0.192 3.808 10 C -0.156 4.156 11 C -0.512 4.512 12 H 0.077 0.923 13 C 0.084 3.916 14 N -0.894 5.894 15 Si 0.882 3.118 16 H -0.289 1.289 17 H -0.304 1.304 18 H -0.224 1.224 19 O -0.351 6.351 20 H 0.052 0.948 21 H 0.049 0.951 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.053 0.947 27 H 0.080 0.920 28 H 0.039 0.961 29 H 0.032 0.968 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.046 0.954 36 H 0.033 0.967 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.044 -3.433 1.823 14.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C 0.066 3.934 4 C -0.011 4.011 5 O -0.293 6.293 6 C -0.065 4.065 7 C -0.182 4.182 8 C -0.168 4.168 9 C 0.155 3.845 10 C -0.213 4.213 11 C -0.548 4.548 12 H 0.096 0.904 13 C -0.120 4.120 14 N -0.531 5.531 15 Si 0.712 3.288 16 H -0.218 1.218 17 H -0.232 1.232 18 H -0.148 1.148 19 O -0.271 6.271 20 H 0.071 0.929 21 H 0.068 0.932 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.090 0.910 25 H 0.063 0.937 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.050 0.950 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.065 0.935 36 H 0.052 0.948 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.628 -3.686 1.995 14.258 hybrid contribution -0.067 -0.525 0.059 0.532 sum -13.695 -4.210 2.054 14.474 Atomic orbital electron populations 1.21806 0.96267 1.01071 1.01369 1.21766 0.94689 0.96990 1.02676 1.21876 0.85928 0.93778 0.91851 1.22919 0.96326 0.95421 0.86454 1.87970 1.78362 1.49767 1.13175 1.22678 0.98375 0.98732 0.86749 1.23118 0.98719 0.98983 0.97362 1.23134 0.93937 0.98912 1.00815 1.20343 0.93790 0.88075 0.82319 1.22429 0.99424 0.99505 0.99979 1.20866 0.90070 0.94534 1.49364 0.90448 1.25035 0.95183 0.99030 0.92710 1.69917 1.00276 1.36376 1.46549 0.86997 0.79568 0.85883 0.76365 1.21756 1.23194 1.14755 1.88941 1.15591 1.78634 1.43904 0.92923 0.93164 0.92903 0.92082 0.90959 0.93693 0.92914 0.90147 0.94263 0.94967 0.90842 0.91542 0.91420 0.91172 0.92300 0.93514 0.94802 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.38 37.16 0.35 -1.58 16 2 C -0.12 -2.09 5.10 -26.73 -0.14 -2.23 16 3 C 0.11 2.01 0.80 -89.89 -0.07 1.94 16 4 C 0.07 1.15 4.59 37.16 0.17 1.32 16 5 O -0.37 -6.96 9.80 -39.17 -0.38 -7.34 16 6 C 0.03 0.44 11.01 101.05 1.11 1.55 16 7 C -0.14 -2.37 4.65 -24.78 -0.12 -2.49 16 8 C -0.13 -2.55 6.01 -24.48 -0.15 -2.70 16 9 C 0.19 4.58 0.67 -90.74 -0.06 4.52 16 10 C -0.16 -3.46 8.28 37.16 0.31 -3.15 16 11 C -0.51 -14.64 8.91 -34.44 -0.31 -14.95 16 12 H 0.08 2.36 8.00 -52.49 -0.42 1.94 16 13 C 0.08 2.52 5.45 -17.82 -0.10 2.42 16 14 N -0.89 -27.97 13.96 55.43 0.77 -27.20 16 15 Si 0.88 23.31 23.92 -169.99 -4.07 19.25 16 16 H -0.29 -7.40 6.87 56.52 0.39 -7.01 16 17 H -0.30 -8.14 7.11 56.52 0.40 -7.74 16 18 H -0.22 -5.86 5.48 56.52 0.31 -5.55 16 19 O -0.35 -8.48 7.36 -39.17 -0.29 -8.76 16 20 H 0.05 0.63 7.01 -51.93 -0.36 0.26 16 21 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 22 H 0.05 0.66 6.44 -51.93 -0.33 0.33 16 23 H 0.06 1.05 7.93 -51.93 -0.41 0.64 16 24 H 0.07 1.33 7.49 -51.93 -0.39 0.94 16 25 H 0.05 0.65 6.65 -51.93 -0.35 0.31 16 26 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 1.11 7.05 -51.92 -0.37 0.75 16 31 H 0.07 0.93 7.81 -51.93 -0.41 0.52 16 32 H 0.07 1.21 8.03 -51.93 -0.42 0.80 16 33 H 0.07 1.41 8.04 -51.93 -0.42 0.99 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.05 1.11 3.06 -51.93 -0.16 0.95 16 36 H 0.03 0.65 7.31 -51.93 -0.38 0.27 16 37 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 LS Contribution 281.34 15.07 4.24 4.24 Total: -1.00 -32.26 281.34 -4.91 -37.17 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: -6.19 Total: -2.01 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 1.00 Total: -15.35 kcal Atomic # 7 Polarization: -27.97 SS G_CDS: 0.77 Total: -27.20 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -0.67 Total: -16.11 kcal Atomic # 14 Polarization: 23.31 SS G_CDS: -4.07 Total: 19.25 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -32.26 -4.91 -37.17 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308697197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.159 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds