Wall clock time and date at job start Mon Mar 30 2020 03:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47222 * 2 1 4 4 C 1.53001 * 109.82031 * 63.63482 * 3 2 1 5 5 O 1.42898 * 109.46987 * 55.93094 * 4 3 2 6 6 C 1.42898 * 114.00101 * 179.97438 * 5 4 3 7 7 C 1.54382 * 109.82864 * 302.75106 * 3 2 1 8 8 C 1.55305 * 102.25144 * 219.03733 * 7 3 2 9 9 C 1.54950 * 100.93995 * 34.13521 * 8 7 3 10 10 C 1.52998 * 110.30988 * 82.47029 * 9 8 7 11 11 C 1.50703 * 110.30656 * 204.53853 * 9 8 7 12 12 H 1.08000 * 119.99700 * 359.97438 * 11 9 8 13 13 C 1.37867 * 119.99989 * 179.97438 * 11 9 8 14 14 N 1.31517 * 120.00093 * 180.02562 * 13 11 9 15 15 Si 1.86801 * 120.00081 * 0.02562 * 13 11 9 16 16 H 1.48506 * 109.47114 * 90.00140 * 15 13 11 17 17 H 1.48502 * 109.47286 * 210.00251 * 15 13 11 18 18 H 1.48498 * 109.47125 * 329.99855 * 15 13 11 19 19 O 1.43231 * 109.90639 * 184.57274 * 3 2 1 20 20 H 1.08996 * 109.46762 * 64.31171 * 1 2 3 21 21 H 1.09001 * 109.46878 * 184.31019 * 1 2 3 22 22 H 1.09003 * 109.47477 * 304.31038 * 1 2 3 23 23 H 1.08996 * 109.47413 * 239.99693 * 2 1 3 24 24 H 1.08999 * 109.47355 * 119.99450 * 2 1 3 25 25 H 1.08991 * 109.47564 * 295.92555 * 4 3 2 26 26 H 1.08999 * 109.46545 * 175.92389 * 4 3 2 27 27 H 1.09000 * 109.47782 * 179.97438 * 6 5 4 28 28 H 1.09003 * 109.46755 * 300.00074 * 6 5 4 29 29 H 1.09002 * 109.47413 * 59.98961 * 6 5 4 30 30 H 1.09008 * 110.84551 * 337.22863 * 7 3 2 31 31 H 1.08995 * 110.84608 * 100.84622 * 7 3 2 32 32 H 1.09002 * 111.12085 * 152.04951 * 8 7 3 33 33 H 1.08993 * 111.12300 * 276.21486 * 8 7 3 34 34 H 1.09006 * 109.47319 * 59.99886 * 10 9 8 35 35 H 1.08999 * 109.47420 * 179.97438 * 10 9 8 36 36 H 1.08999 * 109.46996 * 299.99530 * 10 9 8 37 37 H 0.97000 * 119.99936 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.6103 2.1448 1.2897 5 8 2.0754 1.3985 2.4160 6 6 1.7260 1.9717 3.6775 7 6 1.4738 2.1982 -1.2214 8 6 2.6845 3.0649 -1.6630 9 6 3.8637 2.1210 -1.3170 10 6 4.0758 1.1029 -2.4391 11 6 5.1224 2.9181 -1.0902 12 1 5.1037 3.9942 -1.1800 13 6 6.2978 2.2735 -0.7681 14 7 7.3962 2.9691 -0.5697 15 14 6.3303 0.4122 -0.6136 16 1 6.6527 -0.1885 -1.9329 17 1 7.3635 0.0156 0.3767 18 1 5.0006 -0.0703 -0.1616 19 8 3.4682 1.4548 -0.1074 20 1 -0.3633 0.4455 -0.9261 21 1 -0.3633 -1.0248 0.0772 22 1 -0.3634 0.5793 0.8488 23 1 1.8933 -0.5138 -0.8899 24 1 1.8933 -0.5137 0.8900 25 1 0.5229 2.2116 1.3220 26 1 2.0370 3.1474 1.3168 27 1 2.1148 1.3463 4.4811 28 1 2.1554 2.9707 3.7540 29 1 0.6410 2.0355 3.7596 30 1 1.1872 1.5019 -2.0096 31 1 0.6316 2.8268 -0.9324 32 1 2.6491 3.2735 -2.7323 33 1 2.7379 3.9881 -1.0860 34 1 4.3006 1.6273 -3.3679 35 1 4.9076 0.4470 -2.1822 36 1 3.1706 0.5092 -2.5669 37 1 8.2231 2.5156 -0.3428 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308697197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:06 Heat of formation + Delta-G solvation = -112.999246 kcal Electronic energy + Delta-G solvation = -17609.278606 eV Core-core repulsion = 14965.090722 eV Total energy + Delta-G solvation = -2644.187884 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.03995 -38.45654 -35.68703 -34.23170 -33.00160 -31.19218 -28.95060 -27.39101 -26.75128 -25.15886 -23.99107 -21.28667 -20.43298 -18.64363 -17.59398 -17.27200 -16.88678 -16.40959 -15.85460 -15.59941 -14.85920 -14.78278 -14.68540 -14.33679 -13.71357 -13.54299 -13.20910 -13.03187 -12.85667 -12.65961 -12.54214 -12.36065 -12.08861 -12.01169 -11.89906 -11.70095 -11.31134 -11.08346 -10.80106 -10.71459 -10.48543 -9.87093 -8.34601 -6.43862 1.29255 1.39897 1.66321 2.40044 2.83558 3.00266 3.45517 3.82137 3.93111 4.13902 4.20616 4.34935 4.44250 4.47555 4.51988 4.54881 4.61695 4.65417 4.71861 4.72857 4.82168 4.83360 4.89813 5.02998 5.14474 5.20540 5.23332 5.32392 5.41941 5.54458 5.60136 5.69766 6.25218 6.32813 6.58175 6.90549 7.33729 8.80128 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.025688 B = 0.011423 C = 0.010157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.760515 B = 2450.701287 C = 2755.928321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.119 4.119 3 C 0.089 3.911 4 C 0.066 3.934 5 O -0.408 6.408 6 C 0.025 3.975 7 C -0.128 4.128 8 C -0.130 4.130 9 C 0.184 3.816 10 C -0.154 4.154 11 C -0.514 4.514 12 H 0.040 0.960 13 C 0.029 3.971 14 N -0.943 5.943 15 Si 0.942 3.058 16 H -0.275 1.275 17 H -0.315 1.315 18 H -0.220 1.220 19 O -0.386 6.386 20 H 0.070 0.930 21 H 0.064 0.936 22 H 0.058 0.942 23 H 0.056 0.944 24 H 0.049 0.951 25 H 0.083 0.917 26 H 0.031 0.969 27 H 0.091 0.909 28 H 0.034 0.966 29 H 0.061 0.939 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.066 0.934 35 H 0.027 0.973 36 H 0.066 0.934 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.305 -4.811 1.312 18.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.157 4.157 3 C 0.049 3.951 4 C -0.011 4.011 5 O -0.327 6.327 6 C -0.071 4.071 7 C -0.165 4.165 8 C -0.167 4.167 9 C 0.146 3.854 10 C -0.211 4.211 11 C -0.551 4.551 12 H 0.058 0.942 13 C -0.169 4.169 14 N -0.583 5.583 15 Si 0.770 3.230 16 H -0.202 1.202 17 H -0.244 1.244 18 H -0.142 1.142 19 O -0.307 6.307 20 H 0.089 0.911 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.101 0.899 26 H 0.050 0.950 27 H 0.110 0.890 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.085 0.915 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.919 -5.063 1.476 17.721 hybrid contribution 0.891 -0.004 0.286 0.936 sum -16.028 -5.067 1.762 16.902 Atomic orbital electron populations 1.21757 0.92871 1.02476 1.02592 1.21713 0.97523 0.95087 1.01393 1.22317 0.83353 0.95771 0.93624 1.22949 0.98273 0.93926 0.85927 1.87922 1.79308 1.50713 1.14748 1.22886 1.00332 0.98541 0.85307 1.23106 0.97997 0.98773 0.96664 1.23060 0.93936 0.97980 1.01757 1.20300 0.93052 0.89132 0.82940 1.22358 1.00229 0.99131 0.99396 1.21252 0.92604 0.93515 1.47725 0.94201 1.25815 0.95031 1.03119 0.92974 1.70048 1.01022 1.38021 1.49189 0.86067 0.79143 0.81235 0.76537 1.20209 1.24384 1.14239 1.88816 1.19415 1.78589 1.43834 0.91081 0.91717 0.92292 0.92511 0.93198 0.89899 0.95034 0.89012 0.94728 0.92075 0.88581 0.88278 0.89649 0.92760 0.91526 0.95404 0.91473 0.92681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.97 9.38 71.98 0.67 -2.29 16 2 C -0.12 -3.66 5.10 30.60 0.16 -3.51 16 3 C 0.09 3.13 0.80 -10.32 -0.01 3.12 16 4 C 0.07 2.16 4.59 71.98 0.33 2.49 16 5 O -0.41 -14.59 9.80 -145.21 -1.42 -16.01 16 6 C 0.03 0.66 11.01 113.37 1.25 1.91 16 7 C -0.13 -3.68 4.65 31.86 0.15 -3.53 16 8 C -0.13 -4.83 6.01 32.05 0.19 -4.64 16 9 C 0.18 8.59 0.67 -10.87 -0.01 8.58 16 10 C -0.15 -6.49 8.28 71.98 0.60 -5.90 16 11 C -0.51 -30.23 8.91 25.60 0.23 -30.00 16 12 H 0.04 2.56 8.00 -2.91 -0.02 2.54 16 13 C 0.03 1.80 5.45 84.65 0.46 2.26 16 14 N -0.94 -61.37 13.96 21.44 0.30 -61.08 16 15 Si 0.94 49.34 23.92 68.60 1.64 50.99 16 16 H -0.28 -13.56 6.87 99.48 0.68 -12.87 16 17 H -0.31 -16.79 7.11 99.48 0.71 -16.09 16 18 H -0.22 -11.23 5.48 99.48 0.55 -10.68 16 19 O -0.39 -18.30 7.36 -145.21 -1.07 -19.37 16 20 H 0.07 1.27 7.01 -2.39 -0.02 1.25 16 21 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 22 H 0.06 1.18 6.44 -2.39 -0.02 1.17 16 23 H 0.06 1.76 7.93 -2.39 -0.02 1.74 16 24 H 0.05 1.74 7.49 -2.39 -0.02 1.72 16 25 H 0.08 2.05 6.65 -2.39 -0.02 2.03 16 26 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 27 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.10 2.36 7.05 -2.38 -0.02 2.34 16 31 H 0.10 2.24 7.81 -2.39 -0.02 2.22 16 32 H 0.08 2.84 8.03 -2.39 -0.02 2.82 16 33 H 0.05 2.16 8.04 -2.39 -0.02 2.14 16 34 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16 35 H 0.03 1.27 3.06 -2.39 -0.01 1.26 16 36 H 0.07 2.35 7.31 -2.39 -0.02 2.33 16 37 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16 Total: -1.00 -72.75 281.34 4.31 -68.44 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: 0.84 Total: 8.53 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: 4.02 Total: -31.50 kcal Atomic # 7 Polarization: -61.37 SS G_CDS: 0.30 Total: -61.08 kcal Atomic # 8 Polarization: -32.89 SS G_CDS: -2.49 Total: -35.38 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 1.64 Total: 50.99 kcal Total: -72.75 4.31 -68.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308697197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.561 kcal (2) G-P(sol) polarization free energy of solvation -72.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds