Wall clock time and date at job start Mon Mar 30 2020 03:12:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.53008 * 109.47222 * 2 1
4 4 C 1.53001 * 109.82031 * 63.63482 * 3 2 1
5 5 O 1.42898 * 109.46987 * 55.93094 * 4 3 2
6 6 C 1.42898 * 114.00101 * 179.97438 * 5 4 3
7 7 C 1.54382 * 109.82864 * 302.75106 * 3 2 1
8 8 C 1.55305 * 102.25144 * 219.03733 * 7 3 2
9 9 C 1.54950 * 100.93995 * 34.13521 * 8 7 3
10 10 C 1.52998 * 110.30988 * 82.47029 * 9 8 7
11 11 C 1.50703 * 110.30656 * 204.53853 * 9 8 7
12 12 H 1.08000 * 119.99700 * 359.97438 * 11 9 8
13 13 C 1.37867 * 119.99989 * 179.97438 * 11 9 8
14 14 N 1.31517 * 120.00093 * 180.02562 * 13 11 9
15 15 Si 1.86801 * 120.00081 * 0.02562 * 13 11 9
16 16 H 1.48506 * 109.47114 * 90.00140 * 15 13 11
17 17 H 1.48502 * 109.47286 * 210.00251 * 15 13 11
18 18 H 1.48498 * 109.47125 * 329.99855 * 15 13 11
19 19 O 1.43231 * 109.90639 * 184.57274 * 3 2 1
20 20 H 1.08996 * 109.46762 * 64.31171 * 1 2 3
21 21 H 1.09001 * 109.46878 * 184.31019 * 1 2 3
22 22 H 1.09003 * 109.47477 * 304.31038 * 1 2 3
23 23 H 1.08996 * 109.47413 * 239.99693 * 2 1 3
24 24 H 1.08999 * 109.47355 * 119.99450 * 2 1 3
25 25 H 1.08991 * 109.47564 * 295.92555 * 4 3 2
26 26 H 1.08999 * 109.46545 * 175.92389 * 4 3 2
27 27 H 1.09000 * 109.47782 * 179.97438 * 6 5 4
28 28 H 1.09003 * 109.46755 * 300.00074 * 6 5 4
29 29 H 1.09002 * 109.47413 * 59.98961 * 6 5 4
30 30 H 1.09008 * 110.84551 * 337.22863 * 7 3 2
31 31 H 1.08995 * 110.84608 * 100.84622 * 7 3 2
32 32 H 1.09002 * 111.12085 * 152.04951 * 8 7 3
33 33 H 1.08993 * 111.12300 * 276.21486 * 8 7 3
34 34 H 1.09006 * 109.47319 * 59.99886 * 10 9 8
35 35 H 1.08999 * 109.47420 * 179.97438 * 10 9 8
36 36 H 1.08999 * 109.46996 * 299.99530 * 10 9 8
37 37 H 0.97000 * 119.99936 * 179.97438 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 1.6103 2.1448 1.2897
5 8 2.0754 1.3985 2.4160
6 6 1.7260 1.9717 3.6775
7 6 1.4738 2.1982 -1.2214
8 6 2.6845 3.0649 -1.6630
9 6 3.8637 2.1210 -1.3170
10 6 4.0758 1.1029 -2.4391
11 6 5.1224 2.9181 -1.0902
12 1 5.1037 3.9942 -1.1800
13 6 6.2978 2.2735 -0.7681
14 7 7.3962 2.9691 -0.5697
15 14 6.3303 0.4122 -0.6136
16 1 6.6527 -0.1885 -1.9329
17 1 7.3635 0.0156 0.3767
18 1 5.0006 -0.0703 -0.1616
19 8 3.4682 1.4548 -0.1074
20 1 -0.3633 0.4455 -0.9261
21 1 -0.3633 -1.0248 0.0772
22 1 -0.3634 0.5793 0.8488
23 1 1.8933 -0.5138 -0.8899
24 1 1.8933 -0.5137 0.8900
25 1 0.5229 2.2116 1.3220
26 1 2.0370 3.1474 1.3168
27 1 2.1148 1.3463 4.4811
28 1 2.1554 2.9707 3.7540
29 1 0.6410 2.0355 3.7596
30 1 1.1872 1.5019 -2.0096
31 1 0.6316 2.8268 -0.9324
32 1 2.6491 3.2735 -2.7323
33 1 2.7379 3.9881 -1.0860
34 1 4.3006 1.6273 -3.3679
35 1 4.9076 0.4470 -2.1822
36 1 3.1706 0.5092 -2.5669
37 1 8.2231 2.5156 -0.3428
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308697197.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:12:06
Heat of formation + Delta-G solvation = -112.999246 kcal
Electronic energy + Delta-G solvation = -17609.278606 eV
Core-core repulsion = 14965.090722 eV
Total energy + Delta-G solvation = -2644.187884 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 228.151 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-41.03995 -38.45654 -35.68703 -34.23170 -33.00160 -31.19218 -28.95060 -27.39101
-26.75128 -25.15886 -23.99107 -21.28667 -20.43298 -18.64363 -17.59398 -17.27200
-16.88678 -16.40959 -15.85460 -15.59941 -14.85920 -14.78278 -14.68540 -14.33679
-13.71357 -13.54299 -13.20910 -13.03187 -12.85667 -12.65961 -12.54214 -12.36065
-12.08861 -12.01169 -11.89906 -11.70095 -11.31134 -11.08346 -10.80106 -10.71459
-10.48543 -9.87093 -8.34601 -6.43862 1.29255 1.39897 1.66321 2.40044
2.83558 3.00266 3.45517 3.82137 3.93111 4.13902 4.20616 4.34935
4.44250 4.47555 4.51988 4.54881 4.61695 4.65417 4.71861 4.72857
4.82168 4.83360 4.89813 5.02998 5.14474 5.20540 5.23332 5.32392
5.41941 5.54458 5.60136 5.69766 6.25218 6.32813 6.58175 6.90549
7.33729 8.80128
Molecular weight = 228.15amu
Principal moments of inertia in cm(-1)
A = 0.025688 B = 0.011423 C = 0.010157
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1089.760515 B = 2450.701287 C = 2755.928321
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C -0.119 4.119
3 C 0.089 3.911
4 C 0.066 3.934
5 O -0.408 6.408
6 C 0.025 3.975
7 C -0.128 4.128
8 C -0.130 4.130
9 C 0.184 3.816
10 C -0.154 4.154
11 C -0.514 4.514
12 H 0.040 0.960
13 C 0.029 3.971
14 N -0.943 5.943
15 Si 0.942 3.058
16 H -0.275 1.275
17 H -0.315 1.315
18 H -0.220 1.220
19 O -0.386 6.386
20 H 0.070 0.930
21 H 0.064 0.936
22 H 0.058 0.942
23 H 0.056 0.944
24 H 0.049 0.951
25 H 0.083 0.917
26 H 0.031 0.969
27 H 0.091 0.909
28 H 0.034 0.966
29 H 0.061 0.939
30 H 0.096 0.904
31 H 0.099 0.901
32 H 0.085 0.915
33 H 0.054 0.946
34 H 0.066 0.934
35 H 0.027 0.973
36 H 0.066 0.934
37 H 0.264 0.736
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -17.305 -4.811 1.312 18.009
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.157 4.157
3 C 0.049 3.951
4 C -0.011 4.011
5 O -0.327 6.327
6 C -0.071 4.071
7 C -0.165 4.165
8 C -0.167 4.167
9 C 0.146 3.854
10 C -0.211 4.211
11 C -0.551 4.551
12 H 0.058 0.942
13 C -0.169 4.169
14 N -0.583 5.583
15 Si 0.770 3.230
16 H -0.202 1.202
17 H -0.244 1.244
18 H -0.142 1.142
19 O -0.307 6.307
20 H 0.089 0.911
21 H 0.083 0.917
22 H 0.077 0.923
23 H 0.075 0.925
24 H 0.068 0.932
25 H 0.101 0.899
26 H 0.050 0.950
27 H 0.110 0.890
28 H 0.053 0.947
29 H 0.079 0.921
30 H 0.114 0.886
31 H 0.117 0.883
32 H 0.104 0.896
33 H 0.072 0.928
34 H 0.085 0.915
35 H 0.046 0.954
36 H 0.085 0.915
37 H 0.073 0.927
Dipole moment (debyes) X Y Z Total
from point charges -16.919 -5.063 1.476 17.721
hybrid contribution 0.891 -0.004 0.286 0.936
sum -16.028 -5.067 1.762 16.902
Atomic orbital electron populations
1.21757 0.92871 1.02476 1.02592 1.21713 0.97523 0.95087 1.01393
1.22317 0.83353 0.95771 0.93624 1.22949 0.98273 0.93926 0.85927
1.87922 1.79308 1.50713 1.14748 1.22886 1.00332 0.98541 0.85307
1.23106 0.97997 0.98773 0.96664 1.23060 0.93936 0.97980 1.01757
1.20300 0.93052 0.89132 0.82940 1.22358 1.00229 0.99131 0.99396
1.21252 0.92604 0.93515 1.47725 0.94201 1.25815 0.95031 1.03119
0.92974 1.70048 1.01022 1.38021 1.49189 0.86067 0.79143 0.81235
0.76537 1.20209 1.24384 1.14239 1.88816 1.19415 1.78589 1.43834
0.91081 0.91717 0.92292 0.92511 0.93198 0.89899 0.95034 0.89012
0.94728 0.92075 0.88581 0.88278 0.89649 0.92760 0.91526 0.95404
0.91473 0.92681
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.97 9.38 71.98 0.67 -2.29 16
2 C -0.12 -3.66 5.10 30.60 0.16 -3.51 16
3 C 0.09 3.13 0.80 -10.32 -0.01 3.12 16
4 C 0.07 2.16 4.59 71.98 0.33 2.49 16
5 O -0.41 -14.59 9.80 -145.21 -1.42 -16.01 16
6 C 0.03 0.66 11.01 113.37 1.25 1.91 16
7 C -0.13 -3.68 4.65 31.86 0.15 -3.53 16
8 C -0.13 -4.83 6.01 32.05 0.19 -4.64 16
9 C 0.18 8.59 0.67 -10.87 -0.01 8.58 16
10 C -0.15 -6.49 8.28 71.98 0.60 -5.90 16
11 C -0.51 -30.23 8.91 25.60 0.23 -30.00 16
12 H 0.04 2.56 8.00 -2.91 -0.02 2.54 16
13 C 0.03 1.80 5.45 84.65 0.46 2.26 16
14 N -0.94 -61.37 13.96 21.44 0.30 -61.08 16
15 Si 0.94 49.34 23.92 68.60 1.64 50.99 16
16 H -0.28 -13.56 6.87 99.48 0.68 -12.87 16
17 H -0.31 -16.79 7.11 99.48 0.71 -16.09 16
18 H -0.22 -11.23 5.48 99.48 0.55 -10.68 16
19 O -0.39 -18.30 7.36 -145.21 -1.07 -19.37 16
20 H 0.07 1.27 7.01 -2.39 -0.02 1.25 16
21 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16
22 H 0.06 1.18 6.44 -2.39 -0.02 1.17 16
23 H 0.06 1.76 7.93 -2.39 -0.02 1.74 16
24 H 0.05 1.74 7.49 -2.39 -0.02 1.72 16
25 H 0.08 2.05 6.65 -2.39 -0.02 2.03 16
26 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16
27 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16
28 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16
29 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16
30 H 0.10 2.36 7.05 -2.38 -0.02 2.34 16
31 H 0.10 2.24 7.81 -2.39 -0.02 2.22 16
32 H 0.08 2.84 8.03 -2.39 -0.02 2.82 16
33 H 0.05 2.16 8.04 -2.39 -0.02 2.14 16
34 H 0.07 2.64 8.14 -2.38 -0.02 2.62 16
35 H 0.03 1.27 3.06 -2.39 -0.01 1.26 16
36 H 0.07 2.35 7.31 -2.39 -0.02 2.33 16
37 H 0.26 16.26 8.31 -92.71 -0.77 15.49 16
Total: -1.00 -72.75 281.34 4.31 -68.44
By element:
Atomic # 1 Polarization: 7.68 SS G_CDS: 0.84 Total: 8.53 kcal
Atomic # 6 Polarization: -35.52 SS G_CDS: 4.02 Total: -31.50 kcal
Atomic # 7 Polarization: -61.37 SS G_CDS: 0.30 Total: -61.08 kcal
Atomic # 8 Polarization: -32.89 SS G_CDS: -2.49 Total: -35.38 kcal
Atomic # 14 Polarization: 49.34 SS G_CDS: 1.64 Total: 50.99 kcal
Total: -72.75 4.31 -68.44 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308697197.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -44.561 kcal
(2) G-P(sol) polarization free energy of solvation -72.750 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.311 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.312 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.438 kcal
(6) G-S(sol) free energy of system = (1) + (5) -112.999 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds