Wall clock time and date at job start Mon Mar 30 2020 03:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42904 * 113.99707 * 2 1 4 4 C 1.52998 * 109.47082 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.82553 * 184.99782 * 4 3 2 6 6 C 1.52997 * 109.47176 * 179.43888 * 5 4 3 7 7 C 1.53000 * 109.47051 * 299.43737 * 5 4 3 8 8 C 1.54386 * 109.82997 * 305.88400 * 4 3 2 9 9 C 1.55304 * 102.25123 * 140.87114 * 8 4 3 10 10 C 1.54938 * 100.94351 * 325.86425 * 9 8 4 11 11 H 1.08998 * 110.31603 * 277.53346 * 10 9 8 12 12 C 1.50703 * 110.31082 * 155.46164 * 10 9 8 13 13 H 1.07999 * 119.99665 * 359.97438 * 12 10 9 14 14 C 1.37878 * 120.00252 * 180.02562 * 12 10 9 15 15 N 1.31517 * 119.99876 * 359.97438 * 14 12 10 16 16 Si 1.86798 * 120.00097 * 180.02562 * 14 12 10 17 17 H 1.48490 * 109.47475 * 59.99361 * 16 14 12 18 18 H 1.48500 * 109.47313 * 180.02562 * 16 14 12 19 19 H 1.48511 * 109.46787 * 299.99285 * 16 14 12 20 20 O 1.43239 * 109.83387 * 64.10939 * 4 3 2 21 21 H 1.08992 * 109.47215 * 60.00053 * 1 2 3 22 22 H 1.09008 * 109.46890 * 299.99883 * 1 2 3 23 23 H 1.08997 * 109.46825 * 180.02562 * 1 2 3 24 24 H 1.09002 * 109.46655 * 299.99629 * 3 2 1 25 25 H 1.08995 * 109.47665 * 60.00106 * 3 2 1 26 26 H 1.08993 * 109.47502 * 59.43389 * 5 4 3 27 27 H 1.08997 * 109.47430 * 60.00133 * 6 5 4 28 28 H 1.09009 * 109.47035 * 179.97438 * 6 5 4 29 29 H 1.09000 * 109.47212 * 299.99840 * 6 5 4 30 30 H 1.08996 * 109.47342 * 185.67180 * 7 5 4 31 31 H 1.09008 * 109.47197 * 305.66450 * 7 5 4 32 32 H 1.08999 * 109.47401 * 65.66724 * 7 5 4 33 33 H 1.09001 * 110.84679 * 259.06360 * 8 4 3 34 34 H 1.08997 * 110.84410 * 22.47943 * 8 4 3 35 35 H 1.08992 * 111.13056 * 83.78911 * 9 8 4 36 36 H 1.09004 * 111.11983 * 207.94801 * 9 8 4 37 37 H 0.96996 * 120.00167 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1659 2.5732 0.1247 6 6 5.6902 2.4418 0.1373 7 6 3.7382 3.4367 -1.0637 8 6 3.9908 0.2946 1.1757 9 6 5.1489 -0.5228 0.5413 10 6 4.6360 -0.6802 -0.9123 11 1 3.9336 -1.5111 -0.9778 12 6 5.7920 -0.8983 -1.8542 13 1 6.8020 -0.9248 -1.4724 14 6 5.5605 -1.0629 -3.2034 15 7 4.3306 -1.0302 -3.6683 16 14 6.9933 -1.3340 -4.3707 17 1 7.7247 -2.5656 -3.9793 18 1 6.4815 -1.4809 -5.7570 19 1 7.9131 -0.1698 -4.3041 20 8 3.9730 0.5601 -1.2131 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 0.5139 0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 1.6885 1.8463 -0.8901 25 1 1.6886 1.8465 0.8899 26 1 3.8338 3.0407 1.0516 27 1 6.0223 1.9744 -0.7896 28 1 6.1394 3.4311 0.2262 29 1 5.9949 1.8267 0.9840 30 1 4.2656 4.3899 -1.0286 31 1 3.9807 2.9214 -1.9932 32 1 2.6638 3.6139 -1.0161 33 1 4.3536 0.9026 2.0044 34 1 3.1829 -0.3603 1.5019 35 1 6.0849 0.0349 0.5694 36 1 5.2570 -1.4927 1.0269 37 1 4.1677 -1.1464 -4.6173 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308709452.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:46 Heat of formation + Delta-G solvation = -123.115052 kcal Electronic energy + Delta-G solvation = -17543.786339 eV Core-core repulsion = 14899.159801 eV Total energy + Delta-G solvation = -2644.626538 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.86242 -38.20458 -35.82549 -34.26766 -32.57364 -30.90836 -28.68713 -27.59513 -26.80497 -24.85191 -22.88445 -22.05885 -20.05853 -18.57782 -17.40154 -17.06196 -16.68533 -16.54059 -16.12448 -15.59464 -14.99131 -14.40827 -14.19428 -13.93904 -13.72476 -13.44964 -13.07038 -12.79660 -12.76473 -12.72841 -12.39501 -12.32375 -12.19969 -12.06248 -11.84193 -11.59394 -11.23308 -10.99097 -10.84545 -10.63339 -10.47562 -9.63313 -8.08323 -6.28731 1.39874 1.42893 1.50086 2.42974 2.94286 3.10671 3.60120 3.96546 4.04098 4.12827 4.26574 4.32040 4.44312 4.50716 4.52555 4.59115 4.67955 4.77330 4.81940 4.88693 4.91687 5.01638 5.04709 5.08993 5.15704 5.26971 5.27977 5.43846 5.56708 5.64140 5.74999 5.86853 6.28329 6.39663 6.71452 7.19301 7.47147 8.98942 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.024722 B = 0.010300 C = 0.009030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.333327 B = 2717.854228 C = 3099.864650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.063 3.937 4 C 0.090 3.910 5 C -0.085 4.085 6 C -0.140 4.140 7 C -0.138 4.138 8 C -0.131 4.131 9 C -0.141 4.141 10 C 0.215 3.785 11 H -0.022 1.022 12 C -0.547 4.547 13 H 0.062 0.938 14 C 0.023 3.977 15 N -0.902 5.902 16 Si 0.955 3.045 17 H -0.265 1.265 18 H -0.285 1.285 19 H -0.269 1.269 20 O -0.368 6.368 21 H 0.036 0.964 22 H 0.061 0.939 23 H 0.088 0.912 24 H 0.038 0.962 25 H 0.077 0.923 26 H 0.098 0.902 27 H 0.033 0.967 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.028 0.972 32 H 0.057 0.943 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.526 7.329 9.761 12.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.331 6.331 3 C -0.013 4.013 4 C 0.049 3.951 5 C -0.104 4.104 6 C -0.197 4.197 7 C -0.195 4.195 8 C -0.169 4.169 9 C -0.179 4.179 10 C 0.160 3.840 11 H -0.004 1.004 12 C -0.585 4.585 13 H 0.080 0.920 14 C -0.178 4.178 15 N -0.540 5.540 16 Si 0.780 3.220 17 H -0.190 1.190 18 H -0.211 1.211 19 H -0.194 1.194 20 O -0.287 6.287 21 H 0.055 0.945 22 H 0.080 0.920 23 H 0.106 0.894 24 H 0.057 0.943 25 H 0.095 0.905 26 H 0.116 0.884 27 H 0.053 0.947 28 H 0.085 0.915 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.047 0.953 32 H 0.076 0.924 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.563 7.226 9.401 12.381 hybrid contribution 0.200 -0.368 -0.956 1.044 sum -3.363 6.858 8.444 11.386 Atomic orbital electron populations 1.22863 0.80286 1.03221 1.00484 1.87956 1.20892 1.28856 1.95360 1.22941 0.94026 0.84331 1.00043 1.22303 0.91296 0.94309 0.87188 1.21301 0.96310 0.93316 0.99430 1.21821 0.94890 1.01377 1.01611 1.21727 1.00895 0.99063 0.97855 1.23001 0.97880 0.98366 0.97632 1.23294 0.98603 0.99685 0.96309 1.20183 0.89535 0.82990 0.91327 1.00419 1.21489 0.93243 1.50488 0.93276 0.91966 1.25920 0.97891 0.93761 1.00256 1.70213 1.21337 1.48632 1.13839 0.85680 0.79578 0.79081 0.77662 1.19003 1.21059 1.19427 1.88758 1.76082 1.36574 1.27336 0.94496 0.92042 0.89396 0.94324 0.90535 0.88376 0.94734 0.91451 0.92067 0.91290 0.95310 0.92414 0.88666 0.91353 0.90689 0.91855 0.93281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.41 -16.33 9.53 -144.30 -1.38 -17.71 16 3 C 0.06 2.26 4.65 71.98 0.33 2.59 16 4 C 0.09 3.52 0.53 -10.32 -0.01 3.52 16 5 C -0.09 -2.74 2.21 -10.80 -0.02 -2.76 16 6 C -0.14 -4.64 7.78 71.98 0.56 -4.08 16 7 C -0.14 -4.49 8.63 71.98 0.62 -3.87 16 8 C -0.13 -4.74 5.42 31.86 0.17 -4.57 16 9 C -0.14 -6.03 5.92 32.05 0.19 -5.84 16 10 C 0.22 11.80 3.22 30.51 0.10 11.89 16 11 H -0.02 -1.38 8.14 -2.39 -0.02 -1.40 16 12 C -0.55 -31.96 8.80 25.60 0.23 -31.73 16 13 H 0.06 3.48 7.76 -2.91 -0.02 3.46 16 14 C 0.02 1.38 5.43 84.65 0.46 1.84 16 15 N -0.90 -56.93 13.05 21.45 0.28 -56.65 16 16 Si 0.96 45.49 29.54 68.60 2.03 47.51 16 17 H -0.27 -12.03 7.11 99.48 0.71 -11.33 16 18 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 19 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 20 O -0.37 -19.47 8.62 -144.30 -1.24 -20.71 16 21 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 22 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 23 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.04 1.45 6.89 -2.39 -0.02 1.43 16 25 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 26 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.03 1.44 7.69 -2.39 -0.02 1.43 16 28 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 29 H 0.06 1.89 5.50 -2.39 -0.01 1.88 16 30 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.03 1.17 7.54 -2.38 -0.02 1.15 16 32 H 0.06 1.68 6.90 -2.39 -0.02 1.66 16 33 H 0.09 2.73 7.31 -2.39 -0.02 2.71 16 34 H 0.07 2.52 7.01 -2.39 -0.02 2.50 16 35 H 0.07 3.07 5.95 -2.39 -0.01 3.06 16 36 H 0.06 2.55 8.14 -2.38 -0.02 2.53 16 37 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -70.82 289.80 4.59 -66.23 By element: Atomic # 1 Polarization: 11.27 SS G_CDS: 1.02 Total: 12.29 kcal Atomic # 6 Polarization: -34.85 SS G_CDS: 3.88 Total: -30.97 kcal Atomic # 7 Polarization: -56.93 SS G_CDS: 0.28 Total: -56.65 kcal Atomic # 8 Polarization: -35.80 SS G_CDS: -2.62 Total: -38.42 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Total: -70.82 4.59 -66.23 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308709452.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.881 kcal (2) G-P(sol) polarization free energy of solvation -70.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds