Wall clock time and date at job start Mon Mar 30 2020 03:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99697 * 2 1 4 4 C 1.53006 * 109.46516 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46586 * 179.97438 * 4 3 2 6 6 C 1.52991 * 110.27665 * 307.09290 * 5 4 3 7 7 C 1.54946 * 110.30388 * 184.99926 * 5 4 3 8 8 C 1.55312 * 100.94277 * 204.54241 * 7 5 4 9 9 C 1.54382 * 102.25014 * 34.13266 * 8 7 5 10 10 C 1.52997 * 109.83335 * 219.13125 * 9 8 7 11 11 C 1.50706 * 109.83030 * 98.24661 * 9 8 7 12 12 H 1.08002 * 119.99718 * 0.19077 * 11 9 8 13 13 C 1.37879 * 120.00255 * 180.18466 * 11 9 8 14 14 N 1.31512 * 119.99670 * 0.02562 * 13 11 9 15 15 Si 1.86791 * 119.99815 * 180.02562 * 13 11 9 16 16 H 1.48502 * 109.47532 * 359.97438 * 15 13 11 17 17 H 1.48501 * 109.47475 * 120.00222 * 15 13 11 18 18 H 1.48504 * 109.46874 * 240.00106 * 15 13 11 19 19 O 1.43237 * 107.59052 * 338.64694 * 9 8 7 20 20 H 1.08997 * 109.47525 * 300.00332 * 1 2 3 21 21 H 1.09000 * 109.47155 * 59.99942 * 1 2 3 22 22 H 1.09004 * 109.47469 * 180.02562 * 1 2 3 23 23 H 1.08996 * 109.47614 * 60.00217 * 3 2 1 24 24 H 1.09002 * 109.47093 * 299.99667 * 3 2 1 25 25 H 1.08995 * 109.47243 * 60.00311 * 4 3 2 26 26 H 1.08992 * 109.47265 * 299.99831 * 4 3 2 27 27 H 1.09006 * 109.47058 * 297.90430 * 6 5 4 28 28 H 1.08994 * 109.47560 * 57.90932 * 6 5 4 29 29 H 1.09006 * 109.47160 * 177.91623 * 6 5 4 30 30 H 1.09004 * 111.12549 * 86.62759 * 7 5 4 31 31 H 1.08998 * 111.16696 * 322.47380 * 7 5 4 32 32 H 1.09001 * 110.84393 * 275.94844 * 8 7 5 33 33 H 1.08991 * 110.85087 * 152.32406 * 8 7 5 34 34 H 1.09002 * 109.47153 * 60.00064 * 10 9 8 35 35 H 1.09001 * 109.46832 * 300.00254 * 10 9 8 36 36 H 1.09004 * 109.47261 * 180.02562 * 10 9 8 37 37 H 0.97001 * 119.99421 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1577 2.5824 0.0000 6 6 3.5831 3.4180 -1.1455 7 6 5.6989 2.4847 -0.1260 8 6 6.1334 3.8276 0.5221 9 6 5.0654 4.0222 1.6198 10 6 4.6711 5.4981 1.7045 11 6 5.6075 3.5610 2.9481 12 1 6.6120 3.1700 3.0150 13 6 4.8211 3.6382 4.0781 14 7 3.5978 4.1140 3.9965 15 14 5.4934 3.0672 5.7246 16 1 6.8843 2.5775 5.5485 17 1 5.4851 4.2014 6.6831 18 1 4.6452 1.9679 6.2512 19 8 3.9249 3.2345 1.2585 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 1.6886 1.8464 0.8899 24 1 1.6885 1.8464 -0.8900 25 1 3.8574 0.6436 -0.8891 26 1 3.8567 0.6439 0.8908 27 1 3.8333 2.9502 -2.0977 28 1 2.4995 3.4778 -1.0437 29 1 4.0071 4.4216 -1.1114 30 1 6.0054 2.4356 -1.1709 31 1 6.0866 1.6343 0.4349 32 1 6.0953 4.6392 -0.2045 33 1 7.1282 3.7434 0.9595 34 1 4.2653 5.8214 0.7459 35 1 5.5499 6.0956 1.9471 36 1 3.9175 5.6289 2.4811 37 1 3.0447 4.1687 4.7915 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308709812.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:42 Heat of formation + Delta-G solvation = -121.151637 kcal Electronic energy + Delta-G solvation = -17200.126478 eV Core-core repulsion = 14555.585080 eV Total energy + Delta-G solvation = -2644.541398 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.62943 -38.72738 -35.65384 -33.69220 -32.69352 -30.63656 -29.03190 -27.29236 -27.08760 -25.39458 -23.08508 -21.47579 -20.30886 -18.64505 -17.45600 -16.94693 -16.60488 -16.15944 -15.96606 -15.63655 -14.89628 -14.55195 -14.28292 -14.02276 -13.56782 -13.25131 -13.16747 -12.85909 -12.75851 -12.68398 -12.51112 -12.22302 -12.17009 -12.05104 -11.97150 -11.81510 -11.18514 -11.09348 -10.84358 -10.54787 -10.53844 -9.67055 -7.99325 -6.21087 1.38201 1.41144 1.50838 2.44098 2.84953 3.11793 3.54572 3.95809 4.05314 4.25294 4.26242 4.30926 4.47651 4.53042 4.56674 4.60004 4.69600 4.76585 4.80967 4.89231 4.96217 5.05065 5.09262 5.11629 5.16364 5.18189 5.29848 5.42530 5.55429 5.63403 5.73019 6.16162 6.24821 6.40903 6.73102 7.24119 7.54830 9.00815 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.022737 B = 0.009762 C = 0.007908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.190706 B = 2867.562521 C = 3539.973122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.072 3.928 4 C -0.098 4.098 5 C 0.089 3.911 6 C -0.154 4.154 7 C -0.130 4.130 8 C -0.137 4.137 9 C 0.216 3.784 10 C -0.133 4.133 11 C -0.546 4.546 12 H 0.051 0.949 13 C 0.033 3.967 14 N -0.888 5.888 15 Si 0.943 3.057 16 H -0.268 1.268 17 H -0.278 1.278 18 H -0.286 1.286 19 O -0.376 6.376 20 H 0.034 0.966 21 H 0.055 0.945 22 H 0.103 0.897 23 H 0.027 0.973 24 H 0.068 0.932 25 H 0.094 0.906 26 H 0.046 0.954 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.029 0.971 35 H 0.037 0.963 36 H 0.057 0.943 37 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.833 -3.724 -10.357 11.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.004 4.004 4 C -0.135 4.135 5 C 0.049 3.951 6 C -0.211 4.211 7 C -0.167 4.167 8 C -0.175 4.175 9 C 0.178 3.822 10 C -0.191 4.191 11 C -0.584 4.584 12 H 0.069 0.931 13 C -0.169 4.169 14 N -0.526 5.526 15 Si 0.769 3.231 16 H -0.192 1.192 17 H -0.204 1.204 18 H -0.213 1.213 19 O -0.297 6.297 20 H 0.053 0.947 21 H 0.074 0.926 22 H 0.122 0.878 23 H 0.045 0.955 24 H 0.086 0.914 25 H 0.113 0.887 26 H 0.065 0.935 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.116 0.884 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.048 0.952 35 H 0.056 0.944 36 H 0.075 0.925 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.062 -3.851 -10.130 11.032 hybrid contribution 0.126 0.119 1.320 1.331 sum -1.936 -3.732 -8.810 9.762 Atomic orbital electron populations 1.22917 0.79770 1.03850 1.00509 1.87786 1.21430 1.28930 1.95565 1.22506 0.94133 0.83780 0.99994 1.21496 0.93432 0.96158 1.02443 1.22313 0.94268 0.91680 0.86877 1.22228 1.00990 1.00032 0.97891 1.23112 0.94705 0.97491 1.01434 1.23100 0.99581 0.97212 0.97589 1.19666 0.82482 0.88286 0.91774 1.21908 1.00517 0.97204 0.99495 1.21665 0.99416 1.43641 0.93654 0.93096 1.25680 0.94948 0.94488 1.01819 1.70109 1.08495 1.45039 1.28975 0.85766 0.78648 0.77985 0.80711 1.19183 1.20381 1.21275 1.88704 1.41300 1.64322 1.35334 0.94698 0.92610 0.87849 0.95487 0.91404 0.88718 0.93548 0.89646 0.92641 0.93009 0.88407 0.92188 0.91167 0.91858 0.95229 0.94374 0.92452 0.93550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.42 -13.96 10.70 -148.98 -1.59 -15.55 16 3 C 0.07 2.51 5.34 71.98 0.38 2.90 16 4 C -0.10 -3.51 4.95 30.60 0.15 -3.35 16 5 C 0.09 3.38 0.86 -10.13 -0.01 3.37 16 6 C -0.15 -4.81 8.35 71.98 0.60 -4.21 16 7 C -0.13 -4.58 6.05 32.05 0.19 -4.39 16 8 C -0.14 -5.49 5.69 31.86 0.18 -5.31 16 9 C 0.22 10.72 0.82 -11.07 -0.01 10.72 16 10 C -0.13 -6.55 8.52 71.98 0.61 -5.94 16 11 C -0.55 -30.45 8.23 25.60 0.21 -30.24 16 12 H 0.05 2.81 7.48 -2.91 -0.02 2.79 16 13 C 0.03 1.84 5.26 84.66 0.45 2.28 16 14 N -0.89 -52.53 10.92 21.45 0.23 -52.29 16 15 Si 0.94 44.70 29.54 68.60 2.03 46.73 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 17 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16 18 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 19 O -0.38 -18.99 9.33 -148.98 -1.39 -20.38 16 20 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 21 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 22 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 23 H 0.03 1.12 7.99 -2.39 -0.02 1.10 16 24 H 0.07 2.03 6.35 -2.39 -0.02 2.02 16 25 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 26 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 27 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 28 H 0.05 1.73 6.28 -2.39 -0.02 1.71 16 29 H 0.05 1.67 7.30 -2.38 -0.02 1.65 16 30 H 0.10 2.68 8.03 -2.38 -0.02 2.66 16 31 H 0.06 2.24 8.06 -2.39 -0.02 2.22 16 32 H 0.07 2.50 7.53 -2.39 -0.02 2.48 16 33 H 0.06 2.54 7.60 -2.39 -0.02 2.52 16 34 H 0.03 1.28 7.92 -2.39 -0.02 1.26 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.06 3.18 6.02 -2.38 -0.01 3.17 16 37 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -64.91 292.76 4.31 -60.60 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 1.02 Total: 13.18 kcal Atomic # 6 Polarization: -36.31 SS G_CDS: 4.01 Total: -32.29 kcal Atomic # 7 Polarization: -52.53 SS G_CDS: 0.23 Total: -52.29 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: -2.98 Total: -35.93 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -64.91 4.31 -60.60 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308709812.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.552 kcal (2) G-P(sol) polarization free energy of solvation -64.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds