Wall clock time and date at job start Mon Mar 30 2020 03:10:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42901 * 1
3 3 C 1.42899 * 113.99697 * 2 1
4 4 C 1.53006 * 109.46516 * 179.97438 * 3 2 1
5 5 C 1.53005 * 109.46586 * 179.97438 * 4 3 2
6 6 C 1.52991 * 110.27665 * 307.09290 * 5 4 3
7 7 C 1.54946 * 110.30388 * 184.99926 * 5 4 3
8 8 C 1.55312 * 100.94277 * 204.54241 * 7 5 4
9 9 C 1.54382 * 102.25014 * 34.13266 * 8 7 5
10 10 C 1.52997 * 109.83335 * 219.13125 * 9 8 7
11 11 C 1.50706 * 109.83030 * 98.24661 * 9 8 7
12 12 H 1.08002 * 119.99718 * 0.19077 * 11 9 8
13 13 C 1.37879 * 120.00255 * 180.18466 * 11 9 8
14 14 N 1.31512 * 119.99670 * 0.02562 * 13 11 9
15 15 Si 1.86791 * 119.99815 * 180.02562 * 13 11 9
16 16 H 1.48502 * 109.47532 * 359.97438 * 15 13 11
17 17 H 1.48501 * 109.47475 * 120.00222 * 15 13 11
18 18 H 1.48504 * 109.46874 * 240.00106 * 15 13 11
19 19 O 1.43237 * 107.59052 * 338.64694 * 9 8 7
20 20 H 1.08997 * 109.47525 * 300.00332 * 1 2 3
21 21 H 1.09000 * 109.47155 * 59.99942 * 1 2 3
22 22 H 1.09004 * 109.47469 * 180.02562 * 1 2 3
23 23 H 1.08996 * 109.47614 * 60.00217 * 3 2 1
24 24 H 1.09002 * 109.47093 * 299.99667 * 3 2 1
25 25 H 1.08995 * 109.47243 * 60.00311 * 4 3 2
26 26 H 1.08992 * 109.47265 * 299.99831 * 4 3 2
27 27 H 1.09006 * 109.47058 * 297.90430 * 6 5 4
28 28 H 1.08994 * 109.47560 * 57.90932 * 6 5 4
29 29 H 1.09006 * 109.47160 * 177.91623 * 6 5 4
30 30 H 1.09004 * 111.12549 * 86.62759 * 7 5 4
31 31 H 1.08998 * 111.16696 * 322.47380 * 7 5 4
32 32 H 1.09001 * 110.84393 * 275.94844 * 8 7 5
33 33 H 1.08991 * 110.85087 * 152.32406 * 8 7 5
34 34 H 1.09002 * 109.47153 * 60.00064 * 10 9 8
35 35 H 1.09001 * 109.46832 * 300.00254 * 10 9 8
36 36 H 1.09004 * 109.47261 * 180.02562 * 10 9 8
37 37 H 0.97001 * 119.99421 * 180.02562 * 14 13 11
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1846 0.0006
5 6 4.1577 2.5824 0.0000
6 6 3.5831 3.4180 -1.1455
7 6 5.6989 2.4847 -0.1260
8 6 6.1334 3.8276 0.5221
9 6 5.0654 4.0222 1.6198
10 6 4.6711 5.4981 1.7045
11 6 5.6075 3.5610 2.9481
12 1 6.6120 3.1700 3.0150
13 6 4.8211 3.6382 4.0781
14 7 3.5978 4.1140 3.9965
15 14 5.4934 3.0672 5.7246
16 1 6.8843 2.5775 5.5485
17 1 5.4851 4.2014 6.6831
18 1 4.6452 1.9679 6.2512
19 8 3.9249 3.2345 1.2585
20 1 -0.3634 0.5139 0.8899
21 1 -0.3633 0.5138 -0.8900
22 1 -0.3634 -1.0277 0.0005
23 1 1.6886 1.8464 0.8899
24 1 1.6885 1.8464 -0.8900
25 1 3.8574 0.6436 -0.8891
26 1 3.8567 0.6439 0.8908
27 1 3.8333 2.9502 -2.0977
28 1 2.4995 3.4778 -1.0437
29 1 4.0071 4.4216 -1.1114
30 1 6.0054 2.4356 -1.1709
31 1 6.0866 1.6343 0.4349
32 1 6.0953 4.6392 -0.2045
33 1 7.1282 3.7434 0.9595
34 1 4.2653 5.8214 0.7459
35 1 5.5499 6.0956 1.9471
36 1 3.9175 5.6289 2.4811
37 1 3.0447 4.1687 4.7915
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000308709812.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:10:42
Heat of formation + Delta-G solvation = -121.151637 kcal
Electronic energy + Delta-G solvation = -17200.126478 eV
Core-core repulsion = 14555.585080 eV
Total energy + Delta-G solvation = -2644.541398 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 228.151 amu
Computer time = 0.26 seconds
Orbital eigenvalues (eV)
-40.62943 -38.72738 -35.65384 -33.69220 -32.69352 -30.63656 -29.03190 -27.29236
-27.08760 -25.39458 -23.08508 -21.47579 -20.30886 -18.64505 -17.45600 -16.94693
-16.60488 -16.15944 -15.96606 -15.63655 -14.89628 -14.55195 -14.28292 -14.02276
-13.56782 -13.25131 -13.16747 -12.85909 -12.75851 -12.68398 -12.51112 -12.22302
-12.17009 -12.05104 -11.97150 -11.81510 -11.18514 -11.09348 -10.84358 -10.54787
-10.53844 -9.67055 -7.99325 -6.21087 1.38201 1.41144 1.50838 2.44098
2.84953 3.11793 3.54572 3.95809 4.05314 4.25294 4.26242 4.30926
4.47651 4.53042 4.56674 4.60004 4.69600 4.76585 4.80967 4.89231
4.96217 5.05065 5.09262 5.11629 5.16364 5.18189 5.29848 5.42530
5.55429 5.63403 5.73019 6.16162 6.24821 6.40903 6.73102 7.24119
7.54830 9.00815
Molecular weight = 228.15amu
Principal moments of inertia in cm(-1)
A = 0.022737 B = 0.009762 C = 0.007908
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1231.190706 B = 2867.562521 C = 3539.973122
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 O -0.417 6.417
3 C 0.072 3.928
4 C -0.098 4.098
5 C 0.089 3.911
6 C -0.154 4.154
7 C -0.130 4.130
8 C -0.137 4.137
9 C 0.216 3.784
10 C -0.133 4.133
11 C -0.546 4.546
12 H 0.051 0.949
13 C 0.033 3.967
14 N -0.888 5.888
15 Si 0.943 3.057
16 H -0.268 1.268
17 H -0.278 1.278
18 H -0.286 1.286
19 O -0.376 6.376
20 H 0.034 0.966
21 H 0.055 0.945
22 H 0.103 0.897
23 H 0.027 0.973
24 H 0.068 0.932
25 H 0.094 0.906
26 H 0.046 0.954
27 H 0.085 0.915
28 H 0.055 0.945
29 H 0.051 0.949
30 H 0.097 0.903
31 H 0.059 0.941
32 H 0.070 0.930
33 H 0.063 0.937
34 H 0.029 0.971
35 H 0.037 0.963
36 H 0.057 0.943
37 H 0.255 0.745
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.833 -3.724 -10.357 11.157
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.070 4.070
2 O -0.337 6.337
3 C -0.004 4.004
4 C -0.135 4.135
5 C 0.049 3.951
6 C -0.211 4.211
7 C -0.167 4.167
8 C -0.175 4.175
9 C 0.178 3.822
10 C -0.191 4.191
11 C -0.584 4.584
12 H 0.069 0.931
13 C -0.169 4.169
14 N -0.526 5.526
15 Si 0.769 3.231
16 H -0.192 1.192
17 H -0.204 1.204
18 H -0.213 1.213
19 O -0.297 6.297
20 H 0.053 0.947
21 H 0.074 0.926
22 H 0.122 0.878
23 H 0.045 0.955
24 H 0.086 0.914
25 H 0.113 0.887
26 H 0.065 0.935
27 H 0.104 0.896
28 H 0.074 0.926
29 H 0.070 0.930
30 H 0.116 0.884
31 H 0.078 0.922
32 H 0.088 0.912
33 H 0.081 0.919
34 H 0.048 0.952
35 H 0.056 0.944
36 H 0.075 0.925
37 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -2.062 -3.851 -10.130 11.032
hybrid contribution 0.126 0.119 1.320 1.331
sum -1.936 -3.732 -8.810 9.762
Atomic orbital electron populations
1.22917 0.79770 1.03850 1.00509 1.87786 1.21430 1.28930 1.95565
1.22506 0.94133 0.83780 0.99994 1.21496 0.93432 0.96158 1.02443
1.22313 0.94268 0.91680 0.86877 1.22228 1.00990 1.00032 0.97891
1.23112 0.94705 0.97491 1.01434 1.23100 0.99581 0.97212 0.97589
1.19666 0.82482 0.88286 0.91774 1.21908 1.00517 0.97204 0.99495
1.21665 0.99416 1.43641 0.93654 0.93096 1.25680 0.94948 0.94488
1.01819 1.70109 1.08495 1.45039 1.28975 0.85766 0.78648 0.77985
0.80711 1.19183 1.20381 1.21275 1.88704 1.41300 1.64322 1.35334
0.94698 0.92610 0.87849 0.95487 0.91404 0.88718 0.93548 0.89646
0.92641 0.93009 0.88407 0.92188 0.91167 0.91858 0.95229 0.94374
0.92452 0.93550
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.63 11.01 113.37 1.25 1.88 16
2 O -0.42 -13.96 10.70 -148.98 -1.59 -15.55 16
3 C 0.07 2.51 5.34 71.98 0.38 2.90 16
4 C -0.10 -3.51 4.95 30.60 0.15 -3.35 16
5 C 0.09 3.38 0.86 -10.13 -0.01 3.37 16
6 C -0.15 -4.81 8.35 71.98 0.60 -4.21 16
7 C -0.13 -4.58 6.05 32.05 0.19 -4.39 16
8 C -0.14 -5.49 5.69 31.86 0.18 -5.31 16
9 C 0.22 10.72 0.82 -11.07 -0.01 10.72 16
10 C -0.13 -6.55 8.52 71.98 0.61 -5.94 16
11 C -0.55 -30.45 8.23 25.60 0.21 -30.24 16
12 H 0.05 2.81 7.48 -2.91 -0.02 2.79 16
13 C 0.03 1.84 5.26 84.66 0.45 2.28 16
14 N -0.89 -52.53 10.92 21.45 0.23 -52.29 16
15 Si 0.94 44.70 29.54 68.60 2.03 46.73 16
16 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16
17 H -0.28 -12.79 7.11 99.48 0.71 -12.09 16
18 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16
19 O -0.38 -18.99 9.33 -148.98 -1.39 -20.38 16
20 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16
21 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16
22 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16
23 H 0.03 1.12 7.99 -2.39 -0.02 1.10 16
24 H 0.07 2.03 6.35 -2.39 -0.02 2.02 16
25 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16
26 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16
27 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16
28 H 0.05 1.73 6.28 -2.39 -0.02 1.71 16
29 H 0.05 1.67 7.30 -2.38 -0.02 1.65 16
30 H 0.10 2.68 8.03 -2.38 -0.02 2.66 16
31 H 0.06 2.24 8.06 -2.39 -0.02 2.22 16
32 H 0.07 2.50 7.53 -2.39 -0.02 2.48 16
33 H 0.06 2.54 7.60 -2.39 -0.02 2.52 16
34 H 0.03 1.28 7.92 -2.39 -0.02 1.26 16
35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16
36 H 0.06 3.18 6.02 -2.38 -0.01 3.17 16
37 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16
Total: -1.00 -64.91 292.76 4.31 -60.60
By element:
Atomic # 1 Polarization: 12.17 SS G_CDS: 1.02 Total: 13.18 kcal
Atomic # 6 Polarization: -36.31 SS G_CDS: 4.01 Total: -32.29 kcal
Atomic # 7 Polarization: -52.53 SS G_CDS: 0.23 Total: -52.29 kcal
Atomic # 8 Polarization: -32.94 SS G_CDS: -2.98 Total: -35.93 kcal
Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal
Total: -64.91 4.31 -60.60 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000308709812.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -60.552 kcal
(2) G-P(sol) polarization free energy of solvation -64.906 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.458 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.306 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.600 kcal
(6) G-S(sol) free energy of system = (1) + (5) -121.152 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds