Wall clock time and date at job start Mon Mar 30 2020 03:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99880 * 2 1 4 4 C 1.53008 * 109.46666 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46662 * 179.97438 * 4 3 2 6 6 C 1.52999 * 110.27380 * 57.91196 * 5 4 3 7 7 C 1.54949 * 110.30968 * 179.97438 * 5 4 3 8 8 C 1.55304 * 100.94191 * 155.36008 * 7 5 4 9 9 C 1.54385 * 102.25220 * 325.86919 * 8 7 5 10 10 C 1.53002 * 109.82673 * 140.96350 * 9 8 7 11 11 C 1.50696 * 109.82974 * 261.84099 * 9 8 7 12 12 H 1.08003 * 120.00258 * 357.26250 * 11 9 8 13 13 C 1.37880 * 120.00023 * 177.26444 * 11 9 8 14 14 N 1.31508 * 119.99829 * 352.75130 * 13 11 9 15 15 Si 1.86801 * 119.99978 * 172.75196 * 13 11 9 16 16 H 1.48497 * 109.47132 * 265.11434 * 15 13 11 17 17 H 1.48501 * 109.46952 * 145.11330 * 15 13 11 18 18 H 1.48500 * 109.46960 * 25.11450 * 15 13 11 19 19 O 1.43237 * 107.58796 * 21.35938 * 9 8 7 20 20 H 1.08998 * 109.47064 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47299 * 299.99879 * 1 2 3 22 22 H 1.08997 * 109.46747 * 60.00498 * 1 2 3 23 23 H 1.08995 * 109.46938 * 60.00422 * 3 2 1 24 24 H 1.08991 * 109.47227 * 299.99428 * 3 2 1 25 25 H 1.09005 * 109.46926 * 60.00531 * 4 3 2 26 26 H 1.08991 * 109.47117 * 299.99847 * 4 3 2 27 27 H 1.09005 * 109.47169 * 182.08583 * 6 5 4 28 28 H 1.09004 * 109.47456 * 302.08811 * 6 5 4 29 29 H 1.09005 * 109.47277 * 62.08859 * 6 5 4 30 30 H 1.09003 * 111.12004 * 37.44348 * 7 5 4 31 31 H 1.09000 * 111.12259 * 273.28432 * 7 5 4 32 32 H 1.08999 * 110.84665 * 207.67985 * 8 7 5 33 33 H 1.09007 * 111.01974 * 84.14001 * 8 7 5 34 34 H 1.09004 * 109.46638 * 180.48041 * 10 9 8 35 35 H 1.09003 * 109.46808 * 300.47147 * 10 9 8 36 36 H 1.08998 * 109.47436 * 60.47341 * 10 9 8 37 37 H 0.97000 * 119.99843 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 6 3.6764 3.3775 1.2153 7 6 5.7041 2.4826 0.0013 8 6 6.0879 3.8462 -0.6352 9 6 4.9371 4.0749 -1.6387 10 6 4.5410 5.5527 -1.6460 11 6 5.3719 3.6556 -3.0193 12 1 6.3801 3.3057 -3.1850 13 6 4.4824 3.7185 -4.0710 14 7 3.2190 4.0067 -3.8472 15 14 5.0720 3.3943 -5.8136 16 1 5.3995 4.6837 -6.4733 17 1 4.0017 2.7049 -6.5781 18 1 6.2836 2.5364 -5.7746 19 8 3.8275 3.2746 -1.2145 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6886 1.8463 0.8900 24 1 1.6887 1.8463 -0.8900 25 1 3.8575 0.6436 -0.8892 26 1 3.8567 0.6439 0.8908 27 1 4.0978 4.3822 1.1822 28 1 2.5882 3.4392 1.2014 29 1 4.0004 2.8775 2.1282 30 1 6.0446 1.6512 -0.6160 31 1 6.0915 2.4000 1.0168 32 1 7.0452 3.7773 -1.1519 33 1 6.1104 4.6359 0.1159 34 1 3.7228 5.7060 -2.3498 35 1 4.2208 5.8480 -0.6467 36 1 5.3970 6.1569 -1.9466 37 1 2.5933 4.0513 -4.5871 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308709817.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:45 Heat of formation + Delta-G solvation = -102.936133 kcal Electronic energy + Delta-G solvation = -17228.161041 eV Core-core repulsion = 14584.409526 eV Total energy + Delta-G solvation = -2643.751514 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -38.96293 -37.33465 -33.84614 -31.78063 -30.95677 -29.03435 -27.57243 -26.02163 -25.04907 -23.82175 -21.52257 -19.70042 -18.67020 -16.71444 -16.01678 -15.55075 -14.69853 -14.64340 -14.43093 -13.94025 -13.24412 -13.03591 -12.55878 -12.44430 -11.98981 -11.78796 -11.45265 -11.27112 -11.16920 -10.89672 -10.80528 -10.67853 -10.57012 -10.36996 -10.29078 -9.99575 -9.61598 -9.39646 -9.19536 -8.98908 -8.42945 -7.80207 -5.90271 -4.03767 3.32682 3.40535 3.43098 4.15036 4.47179 4.93062 5.40249 5.44653 5.51685 5.56385 5.60187 5.74151 5.78646 5.83823 5.90432 6.01274 6.11519 6.14632 6.17115 6.38717 6.51391 6.57074 6.65754 6.71405 6.82142 6.87845 6.92822 7.07098 7.14802 7.38300 7.56172 7.82750 8.05531 8.42956 8.70093 9.14504 9.66055 11.13134 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.022516 B = 0.010004 C = 0.007971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.251246 B = 2798.342356 C = 3511.768072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.400 6.400 3 C 0.064 3.936 4 C -0.099 4.099 5 C 0.100 3.900 6 C -0.160 4.160 7 C -0.136 4.136 8 C -0.142 4.142 9 C 0.229 3.771 10 C -0.136 4.136 11 C -0.533 4.533 12 H 0.058 0.942 13 C 0.082 3.918 14 N -0.855 5.855 15 Si 0.882 3.118 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 O -0.334 6.334 20 H 0.078 0.922 21 H 0.035 0.965 22 H 0.041 0.959 23 H 0.043 0.957 24 H 0.066 0.934 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.056 0.944 28 H 0.055 0.945 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.014 0.986 36 H 0.036 0.964 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.387 -2.935 8.314 8.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.319 6.319 3 C -0.012 4.012 4 C -0.137 4.137 5 C 0.059 3.941 6 C -0.218 4.218 7 C -0.174 4.174 8 C -0.179 4.179 9 C 0.191 3.809 10 C -0.194 4.194 11 C -0.571 4.571 12 H 0.076 0.924 13 C -0.124 4.124 14 N -0.491 5.491 15 Si 0.710 3.290 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.199 1.199 19 O -0.253 6.253 20 H 0.097 0.903 21 H 0.054 0.946 22 H 0.059 0.941 23 H 0.061 0.939 24 H 0.085 0.915 25 H 0.094 0.906 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.033 0.967 36 H 0.055 0.945 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -1.653 -3.072 8.115 8.833 hybrid contribution 0.242 0.110 -0.878 0.918 sum -1.411 -2.962 7.237 7.946 Atomic orbital electron populations 1.22644 0.81898 1.01883 0.99830 1.87813 1.19076 1.29514 1.95491 1.22640 0.94317 0.83389 1.00830 1.21511 0.93100 0.96727 1.02372 1.21975 0.92873 0.90970 0.88297 1.22291 1.01403 1.00658 0.97433 1.23116 0.95666 0.99028 0.99602 1.23187 1.01140 0.95216 0.98382 1.19611 0.81390 0.88144 0.91717 1.21956 1.01463 0.97273 0.98687 1.21235 0.97607 1.46345 0.91909 0.92422 1.24982 0.94672 0.94193 0.98538 1.70063 1.01931 1.46360 1.30734 0.86756 0.78604 0.78253 0.85363 1.20749 1.21270 1.19912 1.88823 1.39312 1.61401 1.35782 0.90320 0.94641 0.94077 0.93899 0.91526 0.90637 0.91819 0.92515 0.92559 0.93172 0.90974 0.92366 0.91543 0.93195 0.90462 0.96739 0.94492 0.93336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.40 -7.07 10.70 -35.23 -0.38 -7.45 16 3 C 0.06 1.18 5.45 37.16 0.20 1.38 16 4 C -0.10 -1.86 4.92 -26.73 -0.13 -1.99 16 5 C 0.10 1.99 0.85 -89.59 -0.08 1.91 16 6 C -0.16 -2.76 8.49 37.16 0.32 -2.44 16 7 C -0.14 -2.58 6.05 -24.48 -0.15 -2.73 16 8 C -0.14 -2.93 5.69 -24.78 -0.14 -3.08 16 9 C 0.23 5.66 0.82 -91.05 -0.07 5.59 16 10 C -0.14 -3.27 8.55 37.16 0.32 -2.96 16 11 C -0.53 -14.63 8.21 -34.44 -0.28 -14.91 16 12 H 0.06 1.57 7.48 -52.48 -0.39 1.18 16 13 C 0.08 2.27 5.20 -17.82 -0.09 2.18 16 14 N -0.85 -24.60 11.18 55.43 0.62 -23.98 16 15 Si 0.88 21.34 29.54 -169.99 -5.02 16.31 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 O -0.33 -8.34 8.80 -35.23 -0.31 -8.65 16 20 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 21 H 0.03 0.43 8.14 -51.93 -0.42 0.00 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 23 H 0.04 0.71 6.41 -51.93 -0.33 0.38 16 24 H 0.07 1.40 7.84 -51.93 -0.41 1.00 16 25 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.06 1.00 7.34 -51.93 -0.38 0.61 16 28 H 0.06 0.95 6.36 -51.93 -0.33 0.62 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.07 1.40 8.06 -51.93 -0.42 0.99 16 31 H 0.06 0.93 8.03 -51.93 -0.42 0.51 16 32 H 0.07 1.36 7.59 -51.93 -0.39 0.97 16 33 H 0.05 0.95 7.54 -51.92 -0.39 0.55 16 34 H 0.08 2.06 6.53 -51.93 -0.34 1.72 16 35 H 0.01 0.30 7.94 -51.93 -0.41 -0.11 16 36 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 293.21 15.07 4.42 4.42 Total: -1.00 -29.63 293.21 -5.98 -35.62 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -6.31 Total: -0.79 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 1.00 Total: -15.47 kcal Atomic # 7 Polarization: -24.60 SS G_CDS: 0.62 Total: -23.98 kcal Atomic # 8 Polarization: -15.41 SS G_CDS: -0.69 Total: -16.10 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -29.63 -5.98 -35.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308709817.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.321 kcal (2) G-P(sol) polarization free energy of solvation -29.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds