Wall clock time and date at job start Mon Mar 30 2020 03:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42903 * 113.99880 * 2 1 4 4 C 1.53008 * 109.46666 * 179.97438 * 3 2 1 5 5 C 1.52997 * 109.46662 * 179.97438 * 4 3 2 6 6 C 1.52999 * 110.27380 * 57.91196 * 5 4 3 7 7 C 1.54949 * 110.30968 * 179.97438 * 5 4 3 8 8 C 1.55304 * 100.94191 * 155.36008 * 7 5 4 9 9 C 1.54385 * 102.25220 * 325.86919 * 8 7 5 10 10 C 1.53002 * 109.82673 * 140.96350 * 9 8 7 11 11 C 1.50696 * 109.82974 * 261.84099 * 9 8 7 12 12 H 1.08003 * 120.00258 * 357.26250 * 11 9 8 13 13 C 1.37880 * 120.00023 * 177.26444 * 11 9 8 14 14 N 1.31508 * 119.99829 * 352.75130 * 13 11 9 15 15 Si 1.86801 * 119.99978 * 172.75196 * 13 11 9 16 16 H 1.48497 * 109.47132 * 265.11434 * 15 13 11 17 17 H 1.48501 * 109.46952 * 145.11330 * 15 13 11 18 18 H 1.48500 * 109.46960 * 25.11450 * 15 13 11 19 19 O 1.43237 * 107.58796 * 21.35938 * 9 8 7 20 20 H 1.08998 * 109.47064 * 179.97438 * 1 2 3 21 21 H 1.09000 * 109.47299 * 299.99879 * 1 2 3 22 22 H 1.08997 * 109.46747 * 60.00498 * 1 2 3 23 23 H 1.08995 * 109.46938 * 60.00422 * 3 2 1 24 24 H 1.08991 * 109.47227 * 299.99428 * 3 2 1 25 25 H 1.09005 * 109.46926 * 60.00531 * 4 3 2 26 26 H 1.08991 * 109.47117 * 299.99847 * 4 3 2 27 27 H 1.09005 * 109.47169 * 182.08583 * 6 5 4 28 28 H 1.09004 * 109.47456 * 302.08811 * 6 5 4 29 29 H 1.09005 * 109.47277 * 62.08859 * 6 5 4 30 30 H 1.09003 * 111.12004 * 37.44348 * 7 5 4 31 31 H 1.09000 * 111.12259 * 273.28432 * 7 5 4 32 32 H 1.08999 * 110.84665 * 207.67985 * 8 7 5 33 33 H 1.09007 * 111.01974 * 84.14001 * 8 7 5 34 34 H 1.09004 * 109.46638 * 180.48041 * 10 9 8 35 35 H 1.09003 * 109.46808 * 300.47147 * 10 9 8 36 36 H 1.08998 * 109.47436 * 60.47341 * 10 9 8 37 37 H 0.97000 * 119.99843 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 6 3.6764 3.3775 1.2153 7 6 5.7041 2.4826 0.0013 8 6 6.0879 3.8462 -0.6352 9 6 4.9371 4.0749 -1.6387 10 6 4.5410 5.5527 -1.6460 11 6 5.3719 3.6556 -3.0193 12 1 6.3801 3.3057 -3.1850 13 6 4.4824 3.7185 -4.0710 14 7 3.2190 4.0067 -3.8472 15 14 5.0720 3.3943 -5.8136 16 1 5.3995 4.6837 -6.4733 17 1 4.0017 2.7049 -6.5781 18 1 6.2836 2.5364 -5.7746 19 8 3.8275 3.2746 -1.2145 20 1 -0.3633 -1.0276 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8900 23 1 1.6886 1.8463 0.8900 24 1 1.6887 1.8463 -0.8900 25 1 3.8575 0.6436 -0.8892 26 1 3.8567 0.6439 0.8908 27 1 4.0978 4.3822 1.1822 28 1 2.5882 3.4392 1.2014 29 1 4.0004 2.8775 2.1282 30 1 6.0446 1.6512 -0.6160 31 1 6.0915 2.4000 1.0168 32 1 7.0452 3.7773 -1.1519 33 1 6.1104 4.6359 0.1159 34 1 3.7228 5.7060 -2.3498 35 1 4.2208 5.8480 -0.6467 36 1 5.3970 6.1569 -1.9466 37 1 2.5933 4.0513 -4.5871 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308709817.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:10:45 Heat of formation + Delta-G solvation = -121.407209 kcal Electronic energy + Delta-G solvation = -17228.962007 eV Core-core repulsion = 14584.409526 eV Total energy + Delta-G solvation = -2644.552480 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.60307 -38.71031 -35.61133 -33.65533 -32.67914 -30.67032 -29.05165 -27.27810 -27.06265 -25.36581 -23.09190 -21.46449 -20.30359 -18.62232 -17.42421 -16.93703 -16.57183 -16.13992 -15.96027 -15.62772 -14.88674 -14.54466 -14.26920 -14.00261 -13.54707 -13.33107 -13.16090 -12.83846 -12.74010 -12.66583 -12.54787 -12.23988 -12.16804 -12.06584 -11.93797 -11.81013 -11.18775 -11.08305 -10.80005 -10.53969 -10.53219 -9.64009 -7.99358 -6.18799 1.39304 1.41247 1.50021 2.44978 2.85962 3.13898 3.54946 3.96702 4.06019 4.26515 4.28354 4.32530 4.47955 4.54073 4.58060 4.60067 4.70875 4.77099 4.80872 4.89865 4.94995 5.05605 5.09811 5.11201 5.17282 5.17763 5.30493 5.41057 5.54037 5.64552 5.74740 6.08325 6.25576 6.40513 6.73044 7.27278 7.56314 9.02506 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.022516 B = 0.010004 C = 0.007971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.251246 B = 2798.342356 C = 3511.768072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.074 3.926 4 C -0.096 4.096 5 C 0.087 3.913 6 C -0.153 4.153 7 C -0.129 4.129 8 C -0.137 4.137 9 C 0.215 3.785 10 C -0.129 4.129 11 C -0.550 4.550 12 H 0.051 0.949 13 C 0.034 3.966 14 N -0.883 5.883 15 Si 0.940 3.060 16 H -0.274 1.274 17 H -0.288 1.288 18 H -0.270 1.270 19 O -0.368 6.368 20 H 0.104 0.896 21 H 0.055 0.945 22 H 0.033 0.967 23 H 0.065 0.935 24 H 0.027 0.973 25 H 0.045 0.955 26 H 0.094 0.906 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.097 0.903 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.033 0.967 36 H 0.042 0.958 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.886 -3.429 10.063 10.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.337 6.337 3 C -0.002 4.002 4 C -0.134 4.134 5 C 0.047 3.953 6 C -0.210 4.210 7 C -0.167 4.167 8 C -0.174 4.174 9 C 0.177 3.823 10 C -0.186 4.186 11 C -0.588 4.588 12 H 0.069 0.931 13 C -0.168 4.168 14 N -0.520 5.520 15 Si 0.766 3.234 16 H -0.200 1.200 17 H -0.215 1.215 18 H -0.195 1.195 19 O -0.288 6.288 20 H 0.122 0.878 21 H 0.073 0.927 22 H 0.052 0.948 23 H 0.083 0.917 24 H 0.045 0.955 25 H 0.064 0.936 26 H 0.112 0.888 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.052 0.948 36 H 0.061 0.939 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -1.144 -3.569 9.869 10.557 hybrid contribution 0.048 0.225 -1.386 1.405 sum -1.096 -3.344 8.484 9.184 Atomic orbital electron populations 1.22906 0.79826 1.03819 1.00438 1.87779 1.21391 1.28965 1.95564 1.22449 0.94216 0.83684 0.99897 1.21488 0.93380 0.96190 1.02314 1.22321 0.93828 0.91428 0.87730 1.22213 1.01266 1.00272 0.97293 1.23104 0.94885 0.97350 1.01358 1.23098 0.99305 0.97040 0.98001 1.19681 0.82884 0.88086 0.91665 1.21846 1.00432 0.97571 0.98799 1.21634 0.97290 1.45870 0.93988 0.93106 1.25666 0.94816 0.94355 1.02004 1.70201 1.02798 1.47650 1.31382 0.85855 0.78014 0.78286 0.81273 1.19960 1.21455 1.19497 1.88754 1.39677 1.62005 1.38396 0.87796 0.92672 0.94815 0.91738 0.95467 0.93612 0.88787 0.92938 0.92758 0.89730 0.92334 0.88467 0.91892 0.91080 0.93787 0.94827 0.93918 0.93688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 11.01 113.37 1.25 1.92 16 2 O -0.42 -14.32 10.70 -148.98 -1.59 -15.91 16 3 C 0.07 2.66 5.45 71.98 0.39 3.05 16 4 C -0.10 -3.50 4.92 30.60 0.15 -3.35 16 5 C 0.09 3.33 0.85 -10.13 -0.01 3.32 16 6 C -0.15 -4.79 8.49 71.98 0.61 -4.18 16 7 C -0.13 -4.59 6.05 32.05 0.19 -4.39 16 8 C -0.14 -5.44 5.69 31.86 0.18 -5.26 16 9 C 0.21 10.61 0.82 -11.07 -0.01 10.60 16 10 C -0.13 -6.20 8.55 71.98 0.62 -5.59 16 11 C -0.55 -30.59 8.21 25.60 0.21 -30.38 16 12 H 0.05 2.80 7.48 -2.91 -0.02 2.78 16 13 C 0.03 1.93 5.20 84.66 0.44 2.37 16 14 N -0.88 -52.32 11.18 21.45 0.24 -52.08 16 15 Si 0.94 44.55 29.54 68.60 2.03 46.58 16 16 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 18 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 19 O -0.37 -18.54 8.80 -148.98 -1.31 -19.85 16 20 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 21 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 22 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 23 H 0.06 2.02 6.41 -2.39 -0.02 2.01 16 24 H 0.03 1.18 7.84 -2.39 -0.02 1.16 16 25 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 26 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 27 H 0.05 1.68 7.34 -2.38 -0.02 1.66 16 28 H 0.05 1.70 6.36 -2.38 -0.02 1.69 16 29 H 0.08 2.06 8.14 -2.38 -0.02 2.04 16 30 H 0.06 2.21 8.06 -2.39 -0.02 2.19 16 31 H 0.10 2.68 8.03 -2.39 -0.02 2.66 16 32 H 0.06 2.51 7.59 -2.39 -0.02 2.49 16 33 H 0.07 2.49 7.54 -2.38 -0.02 2.48 16 34 H 0.04 2.39 6.53 -2.38 -0.02 2.37 16 35 H 0.03 1.43 7.94 -2.39 -0.02 1.41 16 36 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 Total: -1.00 -64.79 293.21 4.40 -60.39 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: 1.02 Total: 12.76 kcal Atomic # 6 Polarization: -35.91 SS G_CDS: 4.03 Total: -31.89 kcal Atomic # 7 Polarization: -52.32 SS G_CDS: 0.24 Total: -52.08 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -2.91 Total: -35.76 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -64.79 4.40 -60.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308709817.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.017 kcal (2) G-P(sol) polarization free energy of solvation -64.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds