Wall clock time and date at job start Mon Mar 30 2020 03:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99924 * 2 1 4 4 C 1.53001 * 109.47203 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47058 * 65.59526 * 4 3 2 6 6 C 1.37190 * 119.99826 * 84.57904 * 5 4 3 7 7 H 1.08009 * 119.99776 * 306.08113 * 6 5 4 8 8 C 1.38874 * 120.00523 * 125.80657 * 6 5 4 9 9 N 1.31473 * 120.00790 * 159.56696 * 8 6 5 10 10 Si 1.86805 * 119.99656 * 339.57043 * 8 6 5 11 11 H 1.48497 * 109.47457 * 95.45924 * 10 8 6 12 12 H 1.48500 * 109.47258 * 215.46123 * 10 8 6 13 13 H 1.48506 * 109.47149 * 335.45735 * 10 8 6 14 14 C 1.34769 * 120.00156 * 264.57221 * 5 4 3 15 15 O 1.21588 * 120.00264 * 0.02562 * 14 5 4 16 16 N 1.34775 * 120.00069 * 180.02562 * 14 5 4 17 17 C 1.46505 * 120.00007 * 180.02562 * 16 14 5 18 18 C 1.52997 * 117.49741 * 223.74645 * 17 16 14 19 19 C 1.53001 * 117.49869 * 155.08722 * 17 16 14 20 20 H 1.09000 * 109.47291 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47087 * 300.00274 * 1 2 3 22 22 H 1.08998 * 109.47438 * 59.99792 * 1 2 3 23 23 H 1.09003 * 109.47371 * 60.00215 * 3 2 1 24 24 H 1.09001 * 109.47228 * 300.00091 * 3 2 1 25 25 H 1.09002 * 109.46992 * 305.59648 * 4 3 2 26 26 H 1.08998 * 109.47505 * 185.59881 * 4 3 2 27 27 H 0.97000 * 120.00549 * 179.97438 * 9 8 6 28 28 H 0.96998 * 120.00143 * 0.02562 * 16 14 5 29 29 H 1.08999 * 115.54865 * 9.41581 * 17 16 14 30 30 H 1.09001 * 117.50274 * 0.02562 * 18 17 16 31 31 H 1.09001 * 117.50049 * 145.01534 * 18 17 16 32 32 H 1.08993 * 117.50025 * 214.97740 * 19 17 16 33 33 H 1.09003 * 117.49716 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9766 0.5775 -1.2588 6 6 4.1613 1.3600 -2.3704 7 1 3.3645 2.0009 -2.7180 8 6 5.3747 1.3323 -3.0454 9 7 5.4421 1.7393 -4.2937 10 14 6.9112 0.7167 -2.1795 11 1 7.1170 -0.7192 -2.4974 12 1 8.0862 1.4990 -2.6405 13 1 6.7520 0.8810 -0.7122 14 6 4.2013 -0.7498 -1.3241 15 8 4.0373 -1.4434 -0.3390 16 7 4.6077 -1.3083 -2.4814 17 6 4.8513 -2.7512 -2.5525 18 6 6.1106 -3.2197 -3.2843 19 6 4.7342 -3.4207 -3.9233 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.6886 1.8464 0.8900 24 1 1.6885 1.8464 -0.8900 25 1 3.8507 0.5596 0.8348 26 1 3.9784 2.1755 0.0996 27 1 6.2897 1.7203 -4.7650 28 1 4.7389 -0.7550 -3.2672 29 1 4.5314 -3.3254 -1.6830 30 1 6.7581 -2.4545 -3.7124 31 1 6.6191 -4.1024 -2.8964 32 1 4.3377 -4.4354 -3.9556 33 1 4.4755 -2.7876 -4.7721 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000316566443.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:39 Heat of formation + Delta-G solvation = -32.559091 kcal Electronic energy + Delta-G solvation = -16849.375719 eV Core-core repulsion = 14105.135639 eV Total energy + Delta-G solvation = -2744.240080 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.23145 -37.31878 -36.41162 -34.54932 -32.39843 -31.41701 -28.91342 -25.83627 -24.56900 -22.56005 -21.96934 -20.85017 -19.41242 -18.36510 -16.11064 -15.79700 -15.68941 -15.37633 -14.64779 -14.50309 -13.82518 -13.76703 -13.56171 -12.88317 -12.29546 -12.22129 -11.84646 -11.76895 -11.25908 -11.12747 -10.91764 -10.69079 -10.46594 -10.31341 -10.12417 -9.99445 -9.10434 -9.07200 -8.77453 -7.82017 -7.35089 -6.48108 -4.24494 3.19708 3.28413 3.38861 3.88932 4.12400 4.18995 4.41301 4.62121 4.91213 5.23343 5.37658 5.50520 5.59289 5.60514 5.69226 5.89924 5.96765 6.00302 6.00421 6.07523 6.20876 6.35183 6.49504 6.52282 6.71162 7.62305 7.67414 7.77711 7.89167 8.36792 8.60343 9.05273 9.64164 10.05132 10.60260 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.021741 B = 0.012667 C = 0.009549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.566941 B = 2209.884637 C = 2931.395347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.368 6.368 3 C 0.050 3.950 4 C 0.129 3.871 5 N -0.496 5.496 6 C -0.341 4.341 7 H 0.093 0.907 8 C 0.062 3.938 9 N -0.864 5.864 10 Si 0.863 3.137 11 H -0.257 1.257 12 H -0.290 1.290 13 H -0.265 1.265 14 C 0.699 3.301 15 O -0.622 6.622 16 N -0.716 5.716 17 C 0.113 3.887 18 C -0.208 4.208 19 C -0.198 4.198 20 H 0.077 0.923 21 H 0.031 0.969 22 H 0.034 0.966 23 H 0.041 0.959 24 H 0.050 0.950 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.275 0.725 28 H 0.411 0.589 29 H 0.131 0.869 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.096 0.904 33 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.981 -3.648 2.837 5.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.286 6.286 3 C -0.028 4.028 4 C 0.004 3.996 5 N -0.223 5.223 6 C -0.469 4.469 7 H 0.110 0.890 8 C -0.145 4.145 9 N -0.499 5.499 10 Si 0.688 3.312 11 H -0.182 1.182 12 H -0.216 1.216 13 H -0.189 1.189 14 C 0.402 3.598 15 O -0.505 6.505 16 N -0.373 5.373 17 C 0.004 3.996 18 C -0.247 4.247 19 C -0.236 4.236 20 H 0.096 0.904 21 H 0.049 0.951 22 H 0.053 0.947 23 H 0.060 0.940 24 H 0.069 0.931 25 H 0.093 0.907 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.252 0.748 29 H 0.149 0.851 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.892 -4.198 3.373 6.113 hybrid contribution 0.735 0.483 -0.255 0.916 sum -2.157 -3.715 3.118 5.308 Atomic orbital electron populations 1.22635 0.82998 1.01838 0.98950 1.88126 1.17795 1.27588 1.95090 1.23017 0.95928 0.84731 0.99137 1.21328 0.91060 0.98489 0.88711 1.42677 1.66551 1.03400 1.09680 1.18920 0.99512 1.25808 1.02613 0.88981 1.25713 0.98102 0.95551 0.95147 1.69809 1.27050 1.44762 1.08316 0.86998 0.82642 0.79960 0.81562 1.18217 1.21635 1.18889 1.15865 0.78558 0.82722 0.82674 1.90740 1.61884 1.61982 1.35846 1.44768 1.72651 1.06182 1.13673 1.21217 0.99391 0.83096 0.95848 1.23458 0.91851 1.03386 1.06034 1.23338 1.00479 1.01893 0.97929 0.90449 0.95064 0.94749 0.94050 0.93146 0.90743 0.90062 0.91519 0.74844 0.85120 0.88817 0.88794 0.88576 0.88687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.37 -7.64 10.25 -35.23 -0.36 -8.00 16 3 C 0.05 0.95 6.25 37.16 0.23 1.18 16 4 C 0.13 2.77 5.84 -4.04 -0.02 2.75 16 5 N -0.50 -12.40 1.87 -120.18 -0.22 -12.62 16 6 C -0.34 -8.94 9.17 -14.92 -0.14 -9.08 16 7 H 0.09 2.56 8.06 -52.48 -0.42 2.13 16 8 C 0.06 1.62 3.81 -17.47 -0.07 1.55 16 9 N -0.86 -23.30 13.96 55.49 0.77 -22.53 16 10 Si 0.86 20.94 25.53 -169.99 -4.34 16.60 16 11 H -0.26 -6.08 5.80 56.52 0.33 -5.75 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.26 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.70 18.01 6.40 -86.93 -0.56 17.46 16 15 O -0.62 -17.02 15.22 5.29 0.08 -16.94 16 16 N -0.72 -16.92 3.79 -58.68 -0.22 -17.15 16 17 C 0.11 2.25 6.43 -67.93 -0.44 1.81 16 18 C -0.21 -3.56 10.28 -26.70 -0.27 -3.83 16 19 C -0.20 -3.20 10.46 -26.69 -0.28 -3.48 16 20 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 21 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 22 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 23 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 25 H 0.07 1.65 7.26 -51.93 -0.38 1.27 16 26 H 0.08 1.58 8.08 -51.93 -0.42 1.16 16 27 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 28 H 0.41 10.05 5.62 -40.82 -0.23 9.82 16 29 H 0.13 2.63 7.40 -51.93 -0.38 2.25 16 30 H 0.09 1.72 7.25 -51.93 -0.38 1.34 16 31 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 LS Contribution 277.40 15.07 4.18 4.18 Total: -1.00 -30.64 277.40 -5.34 -35.99 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -4.80 Total: 10.48 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: -0.43 Total: 9.99 kcal Atomic # 7 Polarization: -52.63 SS G_CDS: 0.33 Total: -52.30 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.28 Total: -24.94 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.34 Total: 16.60 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.64 -5.34 -35.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316566443.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.427 kcal (2) G-P(sol) polarization free energy of solvation -30.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds