Wall clock time and date at job start Mon Mar 30 2020 03:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 113.99924 * 2 1 4 4 C 1.53001 * 109.47203 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47058 * 65.59526 * 4 3 2 6 6 C 1.37190 * 119.99826 * 84.57904 * 5 4 3 7 7 H 1.08009 * 119.99776 * 306.08113 * 6 5 4 8 8 C 1.38874 * 120.00523 * 125.80657 * 6 5 4 9 9 N 1.31473 * 120.00790 * 159.56696 * 8 6 5 10 10 Si 1.86805 * 119.99656 * 339.57043 * 8 6 5 11 11 H 1.48497 * 109.47457 * 95.45924 * 10 8 6 12 12 H 1.48500 * 109.47258 * 215.46123 * 10 8 6 13 13 H 1.48506 * 109.47149 * 335.45735 * 10 8 6 14 14 C 1.34769 * 120.00156 * 264.57221 * 5 4 3 15 15 O 1.21588 * 120.00264 * 0.02562 * 14 5 4 16 16 N 1.34775 * 120.00069 * 180.02562 * 14 5 4 17 17 C 1.46505 * 120.00007 * 180.02562 * 16 14 5 18 18 C 1.52997 * 117.49741 * 223.74645 * 17 16 14 19 19 C 1.53001 * 117.49869 * 155.08722 * 17 16 14 20 20 H 1.09000 * 109.47291 * 180.02562 * 1 2 3 21 21 H 1.09000 * 109.47087 * 300.00274 * 1 2 3 22 22 H 1.08998 * 109.47438 * 59.99792 * 1 2 3 23 23 H 1.09003 * 109.47371 * 60.00215 * 3 2 1 24 24 H 1.09001 * 109.47228 * 300.00091 * 3 2 1 25 25 H 1.09002 * 109.46992 * 305.59648 * 4 3 2 26 26 H 1.08998 * 109.47505 * 185.59881 * 4 3 2 27 27 H 0.97000 * 120.00549 * 179.97438 * 9 8 6 28 28 H 0.96998 * 120.00143 * 0.02562 * 16 14 5 29 29 H 1.08999 * 115.54865 * 9.41581 * 17 16 14 30 30 H 1.09001 * 117.50274 * 0.02562 * 18 17 16 31 31 H 1.09001 * 117.50049 * 145.01534 * 18 17 16 32 32 H 1.08993 * 117.50025 * 214.97740 * 19 17 16 33 33 H 1.09003 * 117.49716 * 359.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9766 0.5775 -1.2588 6 6 4.1613 1.3600 -2.3704 7 1 3.3645 2.0009 -2.7180 8 6 5.3747 1.3323 -3.0454 9 7 5.4421 1.7393 -4.2937 10 14 6.9112 0.7167 -2.1795 11 1 7.1170 -0.7192 -2.4974 12 1 8.0862 1.4990 -2.6405 13 1 6.7520 0.8810 -0.7122 14 6 4.2013 -0.7498 -1.3241 15 8 4.0373 -1.4434 -0.3390 16 7 4.6077 -1.3083 -2.4814 17 6 4.8513 -2.7512 -2.5525 18 6 6.1106 -3.2197 -3.2843 19 6 4.7342 -3.4207 -3.9233 20 1 -0.3634 -1.0276 0.0005 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 1.6886 1.8464 0.8900 24 1 1.6885 1.8464 -0.8900 25 1 3.8507 0.5596 0.8348 26 1 3.9784 2.1755 0.0996 27 1 6.2897 1.7203 -4.7650 28 1 4.7389 -0.7550 -3.2672 29 1 4.5314 -3.3254 -1.6830 30 1 6.7581 -2.4545 -3.7124 31 1 6.6191 -4.1024 -2.8964 32 1 4.3377 -4.4354 -3.9556 33 1 4.4755 -2.7876 -4.7721 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000316566443.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:38 Heat of formation + Delta-G solvation = -53.442761 kcal Electronic energy + Delta-G solvation = -16850.281303 eV Core-core repulsion = 14105.135639 eV Total energy + Delta-G solvation = -2745.145664 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 228.126 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.09589 -38.81584 -37.94652 -36.51858 -34.27231 -33.27302 -30.55055 -27.20435 -26.53318 -24.17788 -23.28775 -22.46353 -21.29234 -20.24925 -17.85268 -17.66923 -17.22209 -16.97525 -16.26950 -16.16460 -15.60284 -15.32401 -15.22622 -14.84988 -14.12517 -13.81655 -13.46292 -13.29609 -12.91880 -12.71515 -12.56285 -12.30184 -12.15514 -12.02547 -11.88556 -11.40474 -11.08253 -10.83340 -10.47752 -9.66576 -9.18721 -8.53145 -6.31201 1.25345 1.31543 1.41567 2.11368 2.22975 2.33177 2.82617 3.02978 3.14127 3.54570 3.90056 4.12202 4.15059 4.27459 4.37560 4.48378 4.57642 4.58337 4.71581 4.73266 4.82661 4.87253 5.00454 5.07496 5.22078 5.67677 5.83148 5.93717 6.39232 6.42470 6.61890 7.00488 7.68251 8.10355 8.58282 Molecular weight = 228.13amu Principal moments of inertia in cm(-1) A = 0.021741 B = 0.012667 C = 0.009549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.566941 B = 2209.884637 C = 2931.395347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.407 6.407 3 C 0.057 3.943 4 C 0.119 3.881 5 N -0.503 5.503 6 C -0.341 4.341 7 H 0.071 0.929 8 C 0.043 3.957 9 N -0.888 5.888 10 Si 0.906 3.094 11 H -0.249 1.249 12 H -0.282 1.282 13 H -0.282 1.282 14 C 0.688 3.312 15 O -0.645 6.645 16 N -0.719 5.719 17 C 0.069 3.931 18 C -0.195 4.195 19 C -0.169 4.169 20 H 0.086 0.914 21 H 0.058 0.942 22 H 0.038 0.962 23 H 0.080 0.920 24 H 0.042 0.958 25 H 0.064 0.936 26 H 0.097 0.903 27 H 0.281 0.719 28 H 0.406 0.594 29 H 0.124 0.876 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.910 -4.431 2.822 6.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.327 6.327 3 C -0.021 4.021 4 C -0.004 4.004 5 N -0.230 5.230 6 C -0.469 4.469 7 H 0.089 0.911 8 C -0.162 4.162 9 N -0.524 5.524 10 Si 0.731 3.269 11 H -0.174 1.174 12 H -0.208 1.208 13 H -0.208 1.208 14 C 0.391 3.609 15 O -0.530 6.530 16 N -0.375 5.375 17 C -0.038 4.038 18 C -0.234 4.234 19 C -0.207 4.207 20 H 0.104 0.896 21 H 0.076 0.924 22 H 0.057 0.943 23 H 0.098 0.902 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.115 0.885 27 H 0.091 0.909 28 H 0.245 0.755 29 H 0.141 0.859 30 H 0.099 0.901 31 H 0.141 0.859 32 H 0.148 0.852 33 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.823 -4.991 3.342 6.637 hybrid contribution 0.642 0.711 -0.255 0.991 sum -2.181 -4.280 3.088 5.710 Atomic orbital electron populations 1.22838 0.80506 1.03013 1.00449 1.88062 1.20667 1.28536 1.95414 1.22929 0.93996 0.84608 1.00554 1.21567 0.93230 0.98784 0.86845 1.42813 1.66579 1.03249 1.10371 1.18734 0.99132 1.25541 1.03512 0.91128 1.25977 0.99419 0.95630 0.95202 1.69841 1.27912 1.45690 1.08982 0.86359 0.80799 0.80190 0.79554 1.17351 1.20849 1.20768 1.16134 0.78779 0.82919 0.83062 1.90702 1.63105 1.62439 1.36711 1.44839 1.72302 1.07758 1.12597 1.21505 1.02990 0.81379 0.97938 1.23514 0.91538 1.03705 1.04644 1.23423 0.99336 1.02894 0.95095 0.89561 0.92374 0.94313 0.90187 0.93925 0.91748 0.88462 0.90875 0.75548 0.85854 0.90111 0.85891 0.85198 0.89063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.83 11.01 113.37 1.25 2.08 16 2 O -0.41 -16.64 10.25 -148.98 -1.53 -18.17 16 3 C 0.06 2.10 6.25 71.98 0.45 2.55 16 4 C 0.12 5.12 5.84 86.38 0.50 5.62 16 5 N -0.50 -25.27 1.87 -652.39 -1.22 -26.49 16 6 C -0.34 -18.05 9.17 84.01 0.77 -17.28 16 7 H 0.07 4.00 8.06 -2.91 -0.02 3.98 16 8 C 0.04 2.26 3.81 84.90 0.32 2.58 16 9 N -0.89 -47.63 13.96 21.65 0.30 -47.33 16 10 Si 0.91 42.90 25.53 68.60 1.75 44.65 16 11 H -0.25 -11.37 5.80 99.48 0.58 -10.79 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 13 H -0.28 -14.16 7.11 99.48 0.71 -13.45 16 14 C 0.69 35.66 6.40 179.06 1.15 36.81 16 15 O -0.64 -35.60 15.22 -3.99 -0.06 -35.66 16 16 N -0.72 -33.85 3.79 -457.81 -1.73 -35.59 16 17 C 0.07 2.66 6.43 44.99 0.29 2.95 16 18 C -0.20 -6.18 10.28 30.62 0.31 -5.87 16 19 C -0.17 -5.03 10.46 30.62 0.32 -4.71 16 20 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 21 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 24 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.06 2.87 7.26 -2.39 -0.02 2.85 16 26 H 0.10 3.74 8.08 -2.39 -0.02 3.72 16 27 H 0.28 14.07 8.31 -92.71 -0.77 13.30 16 28 H 0.41 19.78 5.62 -92.71 -0.52 19.26 16 29 H 0.12 4.91 7.40 -2.39 -0.02 4.89 16 30 H 0.08 2.79 7.25 -2.39 -0.02 2.78 16 31 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 32 H 0.13 2.99 8.14 -2.39 -0.02 2.97 16 33 H 0.09 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -65.30 277.40 3.33 -61.97 By element: Atomic # 1 Polarization: 31.41 SS G_CDS: 0.45 Total: 31.86 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: 5.37 Total: 24.74 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -2.65 Total: -109.40 kcal Atomic # 8 Polarization: -52.24 SS G_CDS: -1.59 Total: -53.83 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 1.75 Total: 44.65 kcal Total: -65.30 3.33 -61.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000316566443.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.532 kcal (2) G-P(sol) polarization free energy of solvation -65.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds