Wall clock time and date at job start Mon Mar 30 2020 03:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46895 * 2 1 4 4 C 1.53004 * 109.47219 * 294.80794 * 3 2 1 5 5 O 1.42903 * 109.47363 * 174.80551 * 3 2 1 6 6 C 1.42898 * 113.99692 * 59.99953 * 5 3 2 7 7 C 1.53001 * 109.46986 * 54.80627 * 3 2 1 8 8 H 1.09007 * 110.27490 * 297.26437 * 7 3 2 9 9 C 1.54947 * 110.30943 * 175.17520 * 7 3 2 10 10 C 1.55312 * 100.94196 * 204.63835 * 9 7 3 11 11 C 1.54378 * 102.25070 * 34.13370 * 10 9 7 12 12 H 1.08998 * 109.83055 * 98.24729 * 11 10 9 13 13 C 1.50699 * 109.82845 * 219.13162 * 11 10 9 14 14 H 1.08004 * 120.00430 * 359.97438 * 13 11 10 15 15 C 1.37886 * 120.00048 * 180.02562 * 13 11 10 16 16 N 1.31514 * 119.99892 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 119.99931 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.46994 * 90.00472 * 17 15 13 19 19 H 1.48497 * 109.47057 * 209.99756 * 17 15 13 20 20 H 1.48499 * 109.47664 * 330.00044 * 17 15 13 21 21 O 1.43243 * 107.58786 * 338.64000 * 11 10 9 22 22 H 1.09001 * 109.46906 * 181.62490 * 1 2 3 23 23 H 1.08997 * 109.47610 * 301.61979 * 1 2 3 24 24 H 1.08999 * 109.47145 * 61.62619 * 1 2 3 25 25 H 1.08995 * 109.47491 * 240.00536 * 2 1 3 26 26 H 1.09001 * 109.47376 * 119.99690 * 2 1 3 27 27 H 1.08994 * 109.47096 * 179.97438 * 4 3 2 28 28 H 1.09006 * 109.46633 * 299.99822 * 4 3 2 29 29 H 1.08999 * 109.46945 * 59.99492 * 4 3 2 30 30 H 1.08998 * 109.47225 * 60.00081 * 6 5 3 31 31 H 1.08996 * 109.46652 * 180.02562 * 6 5 3 32 32 H 1.08998 * 109.47416 * 299.99848 * 6 5 3 33 33 H 1.09000 * 111.12532 * 86.71912 * 9 7 3 34 34 H 1.08998 * 111.12467 * 322.55476 * 9 7 3 35 35 H 1.08998 * 110.84557 * 275.94343 * 10 9 7 36 36 H 1.08998 * 111.02019 * 152.40340 * 10 9 7 37 37 H 0.96997 * 119.99987 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.6393 2.1252 -1.3094 5 8 3.4637 1.4445 0.1220 6 6 4.1385 0.7588 -0.9346 7 6 1.4261 2.2005 1.1788 8 1 0.3422 2.2487 1.0736 9 6 2.0217 3.6280 1.2692 10 6 1.8064 3.9425 2.7749 11 6 1.9985 2.5576 3.4295 12 1 3.0119 2.4713 3.8216 13 6 1.0017 2.3768 4.5451 14 1 0.2979 3.1637 4.7733 15 6 0.9887 1.2073 5.2753 16 7 1.8460 0.2493 4.9979 17 14 -0.2465 0.9836 6.6586 18 1 -1.4867 0.3692 6.1203 19 1 0.3324 0.0980 7.7007 20 1 -0.5671 2.3053 7.2547 21 8 1.7808 1.5668 2.4181 22 1 -0.3633 -1.0273 0.0291 23 1 -0.3634 0.5388 0.8751 24 1 -0.3633 0.4884 -0.9042 25 1 1.8934 -0.5137 -0.8900 26 1 1.8934 -0.5138 0.8900 27 1 2.0022 3.1529 -1.3092 28 1 2.0767 1.5851 -2.1492 29 1 0.5533 2.1236 -1.4024 30 1 3.8966 1.2308 -1.8869 31 1 5.2147 0.8051 -0.7687 32 1 3.8188 -0.2831 -0.9540 33 1 1.4689 4.3250 0.6394 34 1 3.0818 3.6281 1.0156 35 1 0.7991 4.3191 2.9523 36 1 2.5525 4.6497 3.1371 37 1 1.8367 -0.5735 5.5113 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000319092355.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:14:05 Heat of formation + Delta-G solvation = -121.060597 kcal Electronic energy + Delta-G solvation = -17429.301873 eV Core-core repulsion = 14784.764422 eV Total energy + Delta-G solvation = -2644.537450 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.81851 -38.69136 -35.17393 -34.38879 -32.64508 -30.93150 -29.26473 -27.83892 -26.21678 -25.18599 -22.97873 -21.91545 -20.08710 -18.54488 -17.67701 -17.26131 -16.59506 -16.17112 -15.92240 -15.51863 -14.92582 -14.83141 -14.46612 -13.84630 -13.71197 -13.37045 -13.10020 -12.93263 -12.84651 -12.70963 -12.64764 -12.37067 -12.19232 -12.09909 -11.96548 -11.58201 -11.35864 -11.03623 -11.01883 -10.62431 -10.28053 -9.67055 -8.08621 -6.31177 1.38994 1.40434 1.51117 2.41806 2.97358 3.09500 3.51683 3.81866 3.95998 4.06574 4.18799 4.35641 4.42340 4.49429 4.54911 4.57303 4.66737 4.72226 4.75458 4.83117 4.87341 5.00249 5.00748 5.07311 5.11615 5.15578 5.24192 5.36750 5.44429 5.51480 5.66704 5.80354 6.23138 6.49802 6.66695 7.13780 7.46097 8.97770 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.032196 B = 0.008755 C = 0.008157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 869.462786 B = 3197.522417 C = 3431.875122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.118 3.882 4 C -0.169 4.169 5 O -0.399 6.399 6 C 0.020 3.980 7 C 0.079 3.921 8 H 0.066 0.934 9 C -0.135 4.135 10 C -0.139 4.139 11 C 0.201 3.799 12 H -0.009 1.009 13 C -0.563 4.563 14 H 0.061 0.939 15 C 0.022 3.978 16 N -0.902 5.902 17 Si 0.958 3.042 18 H -0.275 1.275 19 H -0.282 1.282 20 H -0.262 1.262 21 O -0.378 6.378 22 H 0.057 0.943 23 H 0.038 0.962 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.033 0.967 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.087 0.913 32 H 0.040 0.960 33 H 0.096 0.904 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.022 2.875 -14.026 14.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.174 4.174 3 C 0.079 3.921 4 C -0.226 4.226 5 O -0.319 6.319 6 C -0.076 4.076 7 C 0.021 3.979 8 H 0.084 0.916 9 C -0.172 4.172 10 C -0.177 4.177 11 C 0.145 3.855 12 H 0.008 0.992 13 C -0.600 4.600 14 H 0.079 0.921 15 C -0.180 4.180 16 N -0.539 5.539 17 Si 0.782 3.218 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.186 1.186 21 O -0.297 6.297 22 H 0.076 0.924 23 H 0.057 0.943 24 H 0.099 0.901 25 H 0.097 0.903 26 H 0.052 0.948 27 H 0.088 0.912 28 H 0.097 0.903 29 H 0.100 0.900 30 H 0.082 0.918 31 H 0.105 0.895 32 H 0.059 0.941 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.836 2.581 -13.790 14.054 hybrid contribution -0.391 -0.465 0.975 1.149 sum -1.227 2.116 -12.815 13.046 Atomic orbital electron populations 1.21767 0.94379 1.01988 1.02019 1.21924 0.97596 0.96859 1.01068 1.21674 0.80726 0.94812 0.94910 1.22366 1.03302 1.01459 0.95448 1.88033 1.18700 1.76344 1.48795 1.22911 0.97652 0.96171 0.90839 1.23015 0.96936 0.91972 0.86024 0.91629 1.23147 1.01764 0.96406 0.95917 1.23081 1.01487 0.97666 0.95430 1.20098 0.93769 0.84822 0.86850 0.99161 1.21834 1.19541 1.02287 1.16386 0.92076 1.25955 0.97108 0.95603 0.99299 1.70222 1.36878 1.06248 1.40591 0.85586 0.79019 0.78440 0.78710 1.20053 1.20752 1.18570 1.88684 1.89712 1.33187 1.18143 0.92438 0.94264 0.90077 0.90295 0.94786 0.91167 0.90280 0.89993 0.91847 0.89489 0.94141 0.88513 0.90996 0.91429 0.91232 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.42 9.20 71.98 0.66 -3.76 16 2 C -0.14 -4.67 4.39 30.59 0.13 -4.53 16 3 C 0.12 4.02 0.40 -10.79 0.00 4.01 16 4 C -0.17 -4.02 7.84 71.98 0.56 -3.45 16 5 O -0.40 -14.83 9.26 -141.97 -1.31 -16.15 16 6 C 0.02 0.54 10.21 113.37 1.16 1.69 16 7 C 0.08 3.24 2.14 31.26 0.07 3.30 16 8 H 0.07 2.64 6.52 -2.38 -0.02 2.62 16 9 C -0.13 -4.95 5.58 32.05 0.18 -4.77 16 10 C -0.14 -5.99 6.53 31.86 0.21 -5.78 16 11 C 0.20 11.17 3.35 30.32 0.10 11.28 16 12 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 13 C -0.56 -33.19 8.75 25.60 0.22 -32.97 16 14 H 0.06 3.45 7.52 -2.91 -0.02 3.42 16 15 C 0.02 1.31 5.41 84.66 0.46 1.76 16 16 N -0.90 -57.18 12.93 21.45 0.28 -56.90 16 17 Si 0.96 45.58 29.54 68.60 2.03 47.61 16 18 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 20 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 21 O -0.38 -20.78 9.60 -141.97 -1.36 -22.14 16 22 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.04 1.43 6.31 -2.39 -0.02 1.42 16 24 H 0.08 1.91 6.65 -2.39 -0.02 1.89 16 25 H 0.08 2.19 6.83 -2.39 -0.02 2.18 16 26 H 0.03 1.48 7.87 -2.39 -0.02 1.46 16 27 H 0.07 1.59 7.35 -2.39 -0.02 1.58 16 28 H 0.08 1.54 6.54 -2.38 -0.02 1.53 16 29 H 0.08 1.72 6.61 -2.39 -0.02 1.70 16 30 H 0.06 1.31 6.42 -2.39 -0.02 1.29 16 31 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 32 H 0.04 1.04 6.54 -2.39 -0.02 1.03 16 33 H 0.10 2.79 8.06 -2.39 -0.02 2.78 16 34 H 0.07 2.69 7.22 -2.39 -0.02 2.68 16 35 H 0.07 2.81 7.65 -2.39 -0.02 2.79 16 36 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 37 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -71.84 285.41 4.41 -67.43 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: 1.03 Total: 13.37 kcal Atomic # 6 Polarization: -36.97 SS G_CDS: 3.75 Total: -33.22 kcal Atomic # 7 Polarization: -57.18 SS G_CDS: 0.28 Total: -56.90 kcal Atomic # 8 Polarization: -35.61 SS G_CDS: -2.68 Total: -38.29 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.61 kcal Total: -71.84 4.41 -67.43 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000319092355.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.631 kcal (2) G-P(sol) polarization free energy of solvation -71.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds