Wall clock time and date at job start Mon Mar 30 2020 03:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00061 * 2 1 4 4 H 1.48495 * 109.47183 * 269.99773 * 3 2 1 5 5 H 1.48500 * 109.47428 * 30.00186 * 3 2 1 6 6 H 1.48507 * 109.47116 * 150.00106 * 3 2 1 7 7 C 1.37877 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00429 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99874 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.47348 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99948 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46665 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47313 * 62.32071 * 12 11 10 14 14 C 1.46848 * 111.00017 * 52.03437 * 13 12 11 15 15 C 1.53030 * 109.52339 * 185.84139 * 14 13 12 16 16 C 1.53123 * 109.27949 * 300.81594 * 15 14 13 17 17 C 1.53119 * 109.15574 * 57.65609 * 16 15 14 18 18 H 1.08999 * 109.50454 * 62.28770 * 17 16 15 19 19 N 1.46898 * 109.50491 * 182.40383 * 17 16 15 20 20 C 1.46842 * 110.99734 * 176.24077 * 13 12 11 21 21 H 0.97003 * 120.00023 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47210 * 300.00451 * 9 7 2 23 23 H 1.08996 * 109.47211 * 60.00204 * 9 7 2 24 24 H 1.09000 * 109.47327 * 299.99895 * 11 10 9 25 25 H 1.08996 * 109.47374 * 60.00029 * 11 10 9 26 26 H 1.09008 * 109.46702 * 182.32084 * 12 11 10 27 27 H 1.08996 * 109.47156 * 302.31667 * 12 11 10 28 28 H 1.09002 * 109.46100 * 305.85946 * 14 13 12 29 29 H 1.08997 * 109.46504 * 65.82173 * 14 13 12 30 30 H 1.09006 * 109.50450 * 180.87596 * 15 14 13 31 31 H 1.09003 * 109.53749 * 60.77766 * 15 14 13 32 32 H 1.08998 * 109.52298 * 297.75383 * 16 15 14 33 33 H 1.08998 * 109.52382 * 177.55409 * 16 15 14 34 34 H 1.00902 * 111.00226 * 299.80734 * 19 17 16 35 35 H 1.00909 * 110.99882 * 63.75614 * 19 17 16 36 36 H 1.08995 * 109.46850 * 294.17363 * 20 13 12 37 37 H 1.09004 * 109.46553 * 54.15976 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0017 13 7 3.4492 -5.8473 1.2248 14 6 2.5896 -5.8320 2.4153 15 6 3.4427 -5.5722 3.6588 16 6 4.5010 -6.6716 3.7847 17 6 5.3517 -6.6982 2.5118 18 1 5.8727 -5.7470 2.4024 19 7 6.3327 -7.7881 2.6002 20 6 4.4432 -6.9254 1.3014 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 0.8897 23 1 0.6241 -2.5567 -0.8903 24 1 0.9445 -4.9827 0.8886 25 1 0.9452 -4.9822 -0.8913 26 1 2.1797 -6.9396 -0.0438 27 1 3.2932 -5.8235 -0.8701 28 1 1.8441 -5.0431 2.3149 29 1 2.0881 -6.7948 2.5136 30 1 2.8066 -5.5764 4.5440 31 1 3.9337 -4.6032 3.5681 32 1 4.0104 -7.6362 3.9151 33 1 5.1386 -6.4668 4.6447 34 1 6.9446 -7.6606 3.3923 35 1 5.8733 -8.6857 2.6391 36 1 3.9331 -7.8831 1.4050 37 1 5.0443 -6.9305 0.3922 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385186457.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:26 Heat of formation + Delta-G solvation = -51.506340 kcal Electronic energy + Delta-G solvation = -16315.446820 eV Core-core repulsion = 13706.218220 eV Total energy + Delta-G solvation = -2609.228600 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.23868 -36.72212 -34.71079 -32.68794 -32.21438 -29.35661 -27.78579 -26.70050 -24.01986 -22.59620 -22.24568 -20.68478 -19.73470 -16.41522 -16.26416 -16.12913 -15.56564 -14.81694 -14.52754 -14.24866 -14.16085 -13.83255 -13.62380 -13.10374 -12.90822 -12.39098 -12.08706 -11.67067 -11.38968 -11.12017 -10.92594 -10.81794 -10.77169 -10.66777 -10.45858 -10.22520 -9.88785 -9.04031 -8.80498 -8.74440 -8.10570 -8.00398 -6.06209 -4.06948 3.33952 3.38697 3.44859 3.91725 4.39247 4.56249 4.77428 4.83580 4.96504 5.07334 5.26742 5.30428 5.35856 5.49924 5.56866 5.62536 5.66006 5.73408 5.89209 5.98660 6.05785 6.09539 6.10520 6.29573 6.33700 6.42986 6.97181 7.14504 7.23524 7.35065 7.36935 7.47962 7.86058 8.21867 8.66511 9.08022 9.57867 11.05518 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.034838 B = 0.005505 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.529863 B = 5084.854263 C = 5374.532291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.193 3.807 10 O -0.378 6.378 11 C 0.061 3.939 12 C 0.064 3.936 13 N -0.521 5.521 14 C 0.051 3.949 15 C -0.113 4.113 16 C -0.152 4.152 17 C 0.092 3.908 18 H 0.092 0.908 19 N -0.845 5.845 20 C 0.066 3.934 21 H 0.263 0.737 22 H 0.002 0.998 23 H 0.002 0.998 24 H 0.038 0.962 25 H 0.040 0.960 26 H 0.036 0.964 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.023 0.977 30 H 0.063 0.937 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.342 0.658 35 H 0.335 0.665 36 H 0.023 0.977 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.460 -15.236 6.116 17.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.145 4.145 3 Si 0.734 3.266 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.196 1.196 7 C -0.548 4.548 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.297 6.297 11 C -0.017 4.017 12 C -0.064 4.064 13 N -0.246 5.246 14 C -0.076 4.076 15 C -0.152 4.152 16 C -0.192 4.192 17 C -0.020 4.020 18 H 0.111 0.889 19 N -0.373 5.373 20 C -0.062 4.062 21 H 0.072 0.928 22 H 0.020 0.980 23 H 0.020 0.980 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.054 0.946 27 H 0.100 0.900 28 H 0.107 0.893 29 H 0.041 0.959 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.154 0.846 35 H 0.147 0.853 36 H 0.042 0.958 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 7.026 -14.378 5.374 16.881 hybrid contribution -0.986 -0.147 0.983 1.400 sum 6.041 -14.525 6.357 16.967 Atomic orbital electron populations 1.69966 1.06111 1.27033 1.50950 1.24941 0.94943 0.99388 0.95269 0.86353 0.79712 0.82324 0.78209 1.20505 1.21168 1.19594 1.21067 0.94118 0.89317 1.50269 0.91482 1.20183 0.88869 0.83980 0.95066 1.87976 1.34519 1.12214 1.94999 1.22351 0.93970 0.86441 0.98978 1.22124 0.95434 0.95830 0.93003 1.61711 1.16158 1.44930 1.01846 1.22189 0.95541 1.00029 0.89886 1.21506 0.97215 0.99541 0.96926 1.22439 0.98714 0.99230 0.98774 1.21482 0.91670 0.95553 0.93264 0.88945 1.58857 1.23231 1.04968 1.50220 1.21989 0.93888 0.91595 0.98778 0.92764 0.98010 0.98009 0.94430 0.94218 0.94627 0.89956 0.89348 0.95908 0.91786 0.90378 0.92785 0.92161 0.84591 0.85289 0.95845 0.90167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.91 22.19 29.54 -169.99 -5.02 17.17 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 6 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.51 -15.28 9.43 -34.44 -0.32 -15.60 16 8 H 0.07 2.01 7.81 -52.49 -0.41 1.60 16 9 C 0.19 5.40 5.69 36.01 0.20 5.60 16 10 O -0.38 -9.31 10.23 -35.23 -0.36 -9.67 16 11 C 0.06 1.15 5.56 37.16 0.21 1.35 16 12 C 0.06 1.00 5.52 -3.82 -0.02 0.98 16 13 N -0.52 -8.19 4.67 -234.67 -1.10 -9.28 16 14 C 0.05 0.75 5.04 -3.84 -0.02 0.73 16 15 C -0.11 -1.47 6.09 -26.65 -0.16 -1.63 16 16 C -0.15 -1.64 5.57 -26.61 -0.15 -1.79 16 17 C 0.09 1.07 3.41 -67.63 -0.23 0.84 16 18 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 19 N -0.84 -8.08 9.26 -4.60 -0.04 -8.12 16 20 C 0.07 0.86 5.00 -3.83 -0.02 0.84 16 21 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 23 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 24 H 0.04 0.69 6.05 -51.93 -0.31 0.37 16 25 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.04 0.48 8.14 -51.92 -0.42 0.05 16 27 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 28 H 0.09 1.50 5.79 -51.93 -0.30 1.20 16 29 H 0.02 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.34 2.72 9.04 -39.29 -0.36 2.37 16 35 H 0.34 2.76 8.98 -39.29 -0.35 2.41 16 36 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 1.08 8.12 -51.93 -0.42 0.66 16 LS Contribution 296.91 15.07 4.47 4.47 Total: -1.00 -31.58 296.91 -8.28 -39.86 By element: Atomic # 1 Polarization: 5.63 SS G_CDS: -6.36 Total: -0.74 kcal Atomic # 6 Polarization: -6.53 SS G_CDS: -0.61 Total: -7.14 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: -0.40 Total: -43.96 kcal Atomic # 8 Polarization: -9.31 SS G_CDS: -0.36 Total: -9.67 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.58 -8.28 -39.86 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385186457.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.643 kcal (2) G-P(sol) polarization free energy of solvation -31.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds