Wall clock time and date at job start Mon Mar 30 2020 03:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 120.00061 * 2 1 4 4 H 1.48495 * 109.47183 * 269.99773 * 3 2 1 5 5 H 1.48500 * 109.47428 * 30.00186 * 3 2 1 6 6 H 1.48507 * 109.47116 * 150.00106 * 3 2 1 7 7 C 1.37877 * 120.00110 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00429 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99874 * 359.97438 * 7 2 1 10 10 O 1.42901 * 109.47348 * 180.02562 * 9 7 2 11 11 C 1.42897 * 113.99948 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46665 * 179.97438 * 11 10 9 13 13 N 1.46903 * 109.47313 * 62.32071 * 12 11 10 14 14 C 1.46848 * 111.00017 * 52.03437 * 13 12 11 15 15 C 1.53030 * 109.52339 * 185.84139 * 14 13 12 16 16 C 1.53123 * 109.27949 * 300.81594 * 15 14 13 17 17 C 1.53119 * 109.15574 * 57.65609 * 16 15 14 18 18 H 1.08999 * 109.50454 * 62.28770 * 17 16 15 19 19 N 1.46898 * 109.50491 * 182.40383 * 17 16 15 20 20 C 1.46842 * 110.99734 * 176.24077 * 13 12 11 21 21 H 0.97003 * 120.00023 * 0.02562 * 1 2 3 22 22 H 1.09003 * 109.47210 * 300.00451 * 9 7 2 23 23 H 1.08996 * 109.47211 * 60.00204 * 9 7 2 24 24 H 1.09000 * 109.47327 * 299.99895 * 11 10 9 25 25 H 1.08996 * 109.47374 * 60.00029 * 11 10 9 26 26 H 1.09008 * 109.46702 * 182.32084 * 12 11 10 27 27 H 1.08996 * 109.47156 * 302.31667 * 12 11 10 28 28 H 1.09002 * 109.46100 * 305.85946 * 14 13 12 29 29 H 1.08997 * 109.46504 * 65.82173 * 14 13 12 30 30 H 1.09006 * 109.50450 * 180.87596 * 15 14 13 31 31 H 1.09003 * 109.53749 * 60.77766 * 15 14 13 32 32 H 1.08998 * 109.52298 * 297.75383 * 16 15 14 33 33 H 1.08998 * 109.52382 * 177.55409 * 16 15 14 34 34 H 1.00902 * 111.00226 * 299.80734 * 19 17 16 35 35 H 1.00909 * 110.99882 * 63.75614 * 19 17 16 36 36 H 1.08995 * 109.46850 * 294.17363 * 20 13 12 37 37 H 1.09004 * 109.46553 * 54.15976 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 8 2.1796 -3.5853 -0.0005 11 6 1.5650 -4.8754 -0.0011 12 6 2.6480 -5.9562 -0.0017 13 7 3.4492 -5.8473 1.2248 14 6 2.5896 -5.8320 2.4153 15 6 3.4427 -5.5722 3.6588 16 6 4.5010 -6.6716 3.7847 17 6 5.3517 -6.6982 2.5118 18 1 5.8727 -5.7470 2.4024 19 7 6.3327 -7.7881 2.6002 20 6 4.4432 -6.9254 1.3014 21 1 -0.4850 0.8401 -0.0004 22 1 0.6246 -2.5571 0.8897 23 1 0.6241 -2.5567 -0.8903 24 1 0.9445 -4.9827 0.8886 25 1 0.9452 -4.9822 -0.8913 26 1 2.1797 -6.9396 -0.0438 27 1 3.2932 -5.8235 -0.8701 28 1 1.8441 -5.0431 2.3149 29 1 2.0881 -6.7948 2.5136 30 1 2.8066 -5.5764 4.5440 31 1 3.9337 -4.6032 3.5681 32 1 4.0104 -7.6362 3.9151 33 1 5.1386 -6.4668 4.6447 34 1 6.9446 -7.6606 3.3923 35 1 5.8733 -8.6857 2.6391 36 1 3.9331 -7.8831 1.4050 37 1 5.0443 -6.9305 0.3922 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385186457.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:38:25 Heat of formation + Delta-G solvation = -76.032737 kcal Electronic energy + Delta-G solvation = -16316.510365 eV Core-core repulsion = 13706.218220 eV Total energy + Delta-G solvation = -2610.292145 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.158 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.36142 -38.45024 -35.93267 -34.82212 -33.30153 -30.80097 -29.14875 -28.43590 -25.27077 -24.44692 -23.65008 -21.92359 -20.78117 -18.60765 -17.59815 -17.39044 -17.05626 -16.44608 -15.98104 -15.61296 -15.52357 -15.12830 -14.65211 -14.52574 -14.33021 -13.71845 -13.58855 -13.18740 -12.98873 -12.78953 -12.57131 -12.38754 -12.16721 -12.01829 -11.76338 -11.65766 -11.33470 -11.21541 -10.83806 -10.17245 -9.58852 -9.15385 -8.31360 -6.43117 1.39875 1.42787 1.55034 2.35605 2.82432 3.02375 3.22439 3.70508 3.81605 3.91505 4.05632 4.10296 4.23170 4.30915 4.40308 4.46413 4.57326 4.64400 4.68279 4.75918 4.82942 4.93839 4.97465 5.00250 5.10852 5.19259 5.20193 5.39322 5.56364 5.98004 6.13252 6.16775 6.29713 6.57238 6.63808 6.86524 7.29134 8.81066 Molecular weight = 228.16amu Principal moments of inertia in cm(-1) A = 0.034838 B = 0.005505 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.529863 B = 5084.854263 C = 5374.532291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.007 3.993 3 Si 0.982 3.018 4 H -0.267 1.267 5 H -0.273 1.273 6 H -0.266 1.266 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.209 3.791 10 O -0.393 6.393 11 C 0.052 3.948 12 C 0.071 3.929 13 N -0.548 5.548 14 C 0.053 3.947 15 C -0.113 4.113 16 C -0.141 4.141 17 C 0.097 3.903 18 H 0.067 0.933 19 N -0.844 5.844 20 C 0.069 3.931 21 H 0.270 0.730 22 H -0.018 1.018 23 H -0.016 1.016 24 H 0.043 0.957 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.057 0.943 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.051 0.949 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.352 0.648 35 H 0.346 0.654 36 H 0.041 0.959 37 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.393 -16.000 6.719 18.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.192 1.192 5 H -0.198 1.198 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.134 3.866 10 O -0.313 6.313 11 C -0.026 4.026 12 C -0.056 4.056 13 N -0.274 5.274 14 C -0.075 4.075 15 C -0.152 4.152 16 C -0.181 4.181 17 C -0.015 4.015 18 H 0.085 0.915 19 N -0.375 5.375 20 C -0.059 4.059 21 H 0.079 0.921 22 H 0.000 1.000 23 H 0.001 0.999 24 H 0.061 0.939 25 H 0.066 0.934 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.166 0.834 35 H 0.160 0.840 36 H 0.059 0.941 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 7.963 -15.178 5.981 18.154 hybrid contribution -1.308 0.003 0.793 1.530 sum 6.655 -15.176 6.774 17.902 Atomic orbital electron populations 1.70068 1.07723 1.28585 1.50699 1.25934 0.95937 1.03287 0.93928 0.85205 0.78359 0.77110 0.78872 1.19228 1.19791 1.19039 1.21367 0.93980 0.90920 1.51999 0.92315 1.19788 0.88653 0.85003 0.93132 1.87929 1.34576 1.13740 1.95043 1.22689 0.95573 0.84721 0.99579 1.22048 0.94614 0.95776 0.93205 1.61666 1.16907 1.46877 1.01970 1.22131 0.95238 0.99806 0.90307 1.21497 0.97793 0.99184 0.96709 1.22359 0.98017 0.98935 0.98764 1.21293 0.91721 0.95217 0.93250 0.91460 1.58773 1.22824 1.04849 1.51032 1.21982 0.93363 0.91398 0.99130 0.92070 0.99978 0.99876 0.93931 0.93418 0.91349 0.90314 0.92477 0.93991 0.90380 0.92999 0.91175 0.90747 0.83382 0.84047 0.94123 0.90877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 2 C 0.01 0.44 5.46 84.66 0.46 0.90 16 3 Si 0.98 45.39 29.54 68.60 2.03 47.42 16 4 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 5 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 7 C -0.55 -33.50 9.43 25.60 0.24 -33.25 16 8 H 0.06 3.61 7.81 -2.91 -0.02 3.59 16 9 C 0.21 12.15 5.69 71.24 0.41 12.56 16 10 O -0.39 -20.02 10.23 -148.98 -1.52 -21.55 16 11 C 0.05 1.98 5.56 71.98 0.40 2.38 16 12 C 0.07 2.17 5.52 86.30 0.48 2.65 16 13 N -0.55 -16.90 4.67 -896.36 -4.19 -21.09 16 14 C 0.05 1.52 5.04 86.32 0.44 1.96 16 15 C -0.11 -2.86 6.09 30.65 0.19 -2.67 16 16 C -0.14 -2.73 5.57 30.67 0.17 -2.56 16 17 C 0.10 2.12 3.41 44.97 0.15 2.28 16 18 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 19 N -0.84 -14.18 9.26 -168.45 -1.56 -15.74 16 20 C 0.07 1.69 5.00 86.33 0.43 2.12 16 21 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 22 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 23 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 24 H 0.04 1.59 6.05 -2.39 -0.01 1.58 16 25 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 26 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 28 H 0.06 1.99 5.79 -2.39 -0.01 1.97 16 29 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.35 4.76 9.04 -89.69 -0.81 3.95 16 35 H 0.35 4.65 8.98 -89.69 -0.81 3.84 16 36 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.07 1.88 8.12 -2.39 -0.02 1.86 16 Total: -1.00 -68.47 296.91 -2.16 -70.63 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -0.57 Total: 10.60 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: 3.36 Total: -13.64 kcal Atomic # 7 Polarization: -88.01 SS G_CDS: -5.46 Total: -93.47 kcal Atomic # 8 Polarization: -20.02 SS G_CDS: -1.52 Total: -21.55 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -68.47 -2.16 -70.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385186457.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.399 kcal (2) G-P(sol) polarization free energy of solvation -68.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds