Wall clock time and date at job start Mon Mar 30 2020 03:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99631 * 2 1 4 4 H 1.48505 * 109.46841 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47387 * 299.99683 * 3 2 1 6 6 H 1.48499 * 109.47458 * 59.99857 * 3 2 1 7 7 C 1.37871 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00063 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99602 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46781 * 180.02562 * 11 10 9 13 13 O 1.42896 * 109.47357 * 65.00467 * 12 11 10 14 14 C 1.42896 * 114.00446 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.46906 * 89.99887 * 14 13 12 16 16 C 1.52999 * 109.47317 * 179.97438 * 15 14 13 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 19 19 C 1.53000 * 109.47231 * 209.99746 * 14 13 12 20 20 H 0.97003 * 120.00305 * 0.02562 * 1 2 3 21 21 H 1.09008 * 109.47030 * 60.00102 * 9 7 2 22 22 H 1.08999 * 109.47250 * 300.00130 * 9 7 2 23 23 H 1.09003 * 109.46862 * 60.00769 * 11 10 9 24 24 H 1.08998 * 109.47864 * 300.00561 * 11 10 9 25 25 H 1.08999 * 109.47594 * 305.00042 * 12 11 10 26 26 H 1.09000 * 109.47045 * 185.00320 * 12 11 10 27 27 H 1.09002 * 109.46984 * 330.00066 * 14 13 12 28 28 H 1.08996 * 109.47853 * 300.00254 * 15 14 13 29 29 H 1.09002 * 109.47153 * 60.00282 * 15 14 13 30 30 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 31 31 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 32 32 H 1.09002 * 109.46935 * 299.99411 * 17 16 15 33 33 H 1.09001 * 109.46812 * 179.97438 * 17 16 15 34 34 H 1.08993 * 109.47194 * 179.97438 * 18 17 16 35 35 H 1.09002 * 109.46695 * 59.99734 * 18 17 16 36 36 H 1.08992 * 109.47399 * 300.00058 * 19 14 13 37 37 H 1.09004 * 109.46724 * 60.00544 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5853 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6482 -5.9561 0.0017 13 8 3.3874 -5.8890 1.2228 14 6 4.4291 -6.8618 1.3259 15 6 5.7247 -6.2843 0.7525 16 6 6.8402 -7.3256 0.8634 17 6 7.0517 -7.6917 2.3339 18 6 5.7561 -8.2692 2.9072 19 6 4.6409 -7.2284 2.7961 20 1 -0.4851 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8898 22 1 0.6241 -2.5567 0.8903 23 1 0.9449 -4.9827 -0.8887 24 1 0.9453 -4.9822 0.8912 25 1 3.3218 -5.7960 -0.8401 26 1 2.1822 -6.9374 -0.0875 27 1 4.1497 -7.7540 0.7655 28 1 5.5739 -6.0231 -0.2949 29 1 6.0040 -5.3921 1.3129 30 1 7.7634 -6.9140 0.4554 31 1 6.5611 -8.2180 0.3033 32 1 7.3309 -6.7992 2.8940 33 1 7.8462 -8.4339 2.4128 34 1 5.9070 -8.5304 3.9546 35 1 5.4770 -9.1616 2.3470 36 1 4.9202 -6.3363 3.3564 37 1 3.7178 -7.6399 3.2045 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385300343.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:56 Heat of formation + Delta-G solvation = -125.565544 kcal Electronic energy + Delta-G solvation = -15928.697559 eV Core-core repulsion = 13283.964760 eV Total energy + Delta-G solvation = -2644.732799 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.10684 -37.00368 -35.81941 -32.69424 -30.86773 -30.40005 -28.63384 -26.71188 -22.79484 -22.37430 -22.24313 -21.68870 -19.84675 -16.78268 -16.39788 -15.83257 -15.51438 -14.72497 -14.54217 -14.36294 -14.17157 -13.72066 -13.59621 -12.96199 -12.69560 -12.28557 -12.08613 -11.70773 -11.43954 -11.18675 -11.02338 -10.81873 -10.78717 -10.73616 -10.46884 -10.39050 -10.25968 -9.93977 -9.19117 -9.02822 -8.78556 -8.12100 -6.06844 -4.07890 3.32197 3.38329 3.45513 3.84721 4.38754 4.64471 4.67909 4.87536 4.91940 5.12363 5.16344 5.28097 5.29709 5.42448 5.43491 5.49789 5.52842 5.64556 5.69034 5.89318 5.90983 6.01031 6.05981 6.11954 6.14761 6.16305 6.26027 6.33984 6.39084 7.14587 7.47747 7.55983 7.84696 8.20265 8.63632 9.06298 9.56799 11.04949 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.036561 B = 0.004756 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.657807 B = 5886.088961 C = 6302.854164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.907 3.093 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.511 4.511 8 H 0.067 0.933 9 C 0.193 3.807 10 O -0.388 6.388 11 C 0.064 3.936 12 C 0.069 3.931 13 O -0.368 6.368 14 C 0.090 3.910 15 C -0.143 4.143 16 C -0.116 4.116 17 C -0.122 4.122 18 C -0.115 4.115 19 C -0.117 4.117 20 H 0.263 0.737 21 H 0.004 0.996 22 H 0.006 0.994 23 H 0.051 0.949 24 H 0.045 0.955 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.053 0.947 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.000 -16.975 2.681 19.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.550 4.550 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.308 6.308 11 C -0.014 4.014 12 C -0.008 4.008 13 O -0.287 6.287 14 C 0.032 3.968 15 C -0.181 4.181 16 C -0.154 4.154 17 C -0.160 4.160 18 C -0.153 4.153 19 C -0.155 4.155 20 H 0.072 0.928 21 H 0.022 0.978 22 H 0.024 0.976 23 H 0.069 0.931 24 H 0.063 0.937 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 10.007 -16.682 2.825 19.657 hybrid contribution -0.003 0.699 -0.279 0.753 sum 10.004 -15.983 2.545 19.026 Atomic orbital electron populations 1.69976 1.06102 1.26979 1.50886 1.24947 0.94971 0.99415 0.95220 0.86287 0.80059 0.82610 0.77581 1.19473 1.20873 1.20834 1.21107 0.94129 0.89356 1.50373 0.91495 1.20217 0.88829 0.83737 0.95325 1.87918 1.35107 1.12625 1.95146 1.22258 0.93753 0.85703 0.99703 1.22588 0.93839 0.96973 0.87405 1.88062 1.46879 1.55723 1.38041 1.22032 0.87659 0.90763 0.96370 1.22042 0.94937 0.99258 1.01815 1.21500 0.98576 0.98837 0.96482 1.21581 0.97239 1.00893 0.96283 1.21487 0.94824 0.98035 1.00934 1.21576 0.98742 0.99551 0.95610 0.92761 0.97809 0.97644 0.93125 0.93729 0.92925 0.93020 0.92882 0.91691 0.90812 0.91837 0.92234 0.91706 0.92147 0.91642 0.92105 0.90919 0.91485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.91 22.33 29.54 -169.99 -5.02 17.31 16 4 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.51 -15.59 9.43 -34.44 -0.32 -15.92 16 8 H 0.07 2.04 7.81 -52.49 -0.41 1.63 16 9 C 0.19 5.53 5.69 36.01 0.20 5.73 16 10 O -0.39 -9.98 10.29 -40.08 -0.41 -10.40 16 11 C 0.06 1.26 6.32 37.16 0.23 1.49 16 12 C 0.07 1.12 6.13 37.16 0.23 1.35 16 13 O -0.37 -6.48 9.95 -40.08 -0.40 -6.88 16 14 C 0.09 1.20 2.61 -26.73 -0.07 1.13 16 15 C -0.14 -1.82 5.54 -26.73 -0.15 -1.97 16 16 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 17 C -0.12 -1.10 5.92 -26.73 -0.16 -1.26 16 18 C -0.12 -1.04 5.92 -26.76 -0.16 -1.20 16 19 C -0.12 -1.37 5.57 -26.76 -0.15 -1.52 16 20 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 21 H 0.00 0.12 8.14 -51.92 -0.42 -0.30 16 22 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 23 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 24 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 25 H 0.05 0.84 7.87 -51.93 -0.41 0.43 16 26 H 0.05 0.67 8.08 -51.93 -0.42 0.25 16 27 H 0.05 0.63 7.79 -51.93 -0.40 0.22 16 28 H 0.06 0.86 7.87 -51.93 -0.41 0.46 16 29 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 302.49 15.07 4.56 4.56 Total: -1.00 -32.57 302.49 -7.82 -40.39 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -6.68 Total: -6.28 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: -0.60 Total: -11.93 kcal Atomic # 7 Polarization: -27.51 SS G_CDS: 0.74 Total: -26.77 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.81 Total: -17.28 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.57 -7.82 -40.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385300343.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.178 kcal (2) G-P(sol) polarization free energy of solvation -32.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds