Wall clock time and date at job start Mon Mar 30 2020 03:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 119.99631 * 2 1 4 4 H 1.48505 * 109.46841 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47387 * 299.99683 * 3 2 1 6 6 H 1.48499 * 109.47458 * 59.99857 * 3 2 1 7 7 C 1.37871 * 120.00182 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00139 * 179.97438 * 7 2 1 9 9 C 1.50702 * 120.00063 * 0.02562 * 7 2 1 10 10 O 1.42904 * 109.47044 * 179.97438 * 9 7 2 11 11 C 1.42901 * 113.99602 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.46781 * 180.02562 * 11 10 9 13 13 O 1.42896 * 109.47357 * 65.00467 * 12 11 10 14 14 C 1.42896 * 114.00446 * 179.97438 * 13 12 11 15 15 C 1.52997 * 109.46906 * 89.99887 * 14 13 12 16 16 C 1.52999 * 109.47317 * 179.97438 * 15 14 13 17 17 C 1.53005 * 109.47159 * 300.00546 * 16 15 14 18 18 C 1.52997 * 109.47452 * 59.99536 * 17 16 15 19 19 C 1.53000 * 109.47231 * 209.99746 * 14 13 12 20 20 H 0.97003 * 120.00305 * 0.02562 * 1 2 3 21 21 H 1.09008 * 109.47030 * 60.00102 * 9 7 2 22 22 H 1.08999 * 109.47250 * 300.00130 * 9 7 2 23 23 H 1.09003 * 109.46862 * 60.00769 * 11 10 9 24 24 H 1.08998 * 109.47864 * 300.00561 * 11 10 9 25 25 H 1.08999 * 109.47594 * 305.00042 * 12 11 10 26 26 H 1.09000 * 109.47045 * 185.00320 * 12 11 10 27 27 H 1.09002 * 109.46984 * 330.00066 * 14 13 12 28 28 H 1.08996 * 109.47853 * 300.00254 * 15 14 13 29 29 H 1.09002 * 109.47153 * 60.00282 * 15 14 13 30 30 H 1.09000 * 109.47486 * 180.02562 * 16 15 14 31 31 H 1.09002 * 109.46716 * 60.00091 * 16 15 14 32 32 H 1.09002 * 109.46935 * 299.99411 * 17 16 15 33 33 H 1.09001 * 109.46812 * 179.97438 * 17 16 15 34 34 H 1.08993 * 109.47194 * 179.97438 * 18 17 16 35 35 H 1.09002 * 109.46695 * 59.99734 * 18 17 16 36 36 H 1.08992 * 109.47399 * 300.00058 * 19 14 13 37 37 H 1.09004 * 109.46724 * 60.00544 * 19 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 8 2.1798 -3.5853 0.0005 11 6 1.5652 -4.8754 0.0011 12 6 2.6482 -5.9561 0.0017 13 8 3.3874 -5.8890 1.2228 14 6 4.4291 -6.8618 1.3259 15 6 5.7247 -6.2843 0.7525 16 6 6.8402 -7.3256 0.8634 17 6 7.0517 -7.6917 2.3339 18 6 5.7561 -8.2692 2.9072 19 6 4.6409 -7.2284 2.7961 20 1 -0.4851 0.8400 -0.0004 21 1 0.6247 -2.5571 -0.8898 22 1 0.6241 -2.5567 0.8903 23 1 0.9449 -4.9827 -0.8887 24 1 0.9453 -4.9822 0.8912 25 1 3.3218 -5.7960 -0.8401 26 1 2.1822 -6.9374 -0.0875 27 1 4.1497 -7.7540 0.7655 28 1 5.5739 -6.0231 -0.2949 29 1 6.0040 -5.3921 1.3129 30 1 7.7634 -6.9140 0.4554 31 1 6.5611 -8.2180 0.3033 32 1 7.3309 -6.7992 2.8940 33 1 7.8462 -8.4339 2.4128 34 1 5.9070 -8.5304 3.9546 35 1 5.4770 -9.1616 2.3470 36 1 4.9202 -6.3363 3.3564 37 1 3.7178 -7.6399 3.2045 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385300343.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:55 Heat of formation + Delta-G solvation = -146.116851 kcal Electronic energy + Delta-G solvation = -15929.588730 eV Core-core repulsion = 13283.964760 eV Total energy + Delta-G solvation = -2645.623971 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.17452 -38.66171 -37.17603 -34.94330 -31.82893 -31.61265 -30.01784 -28.75480 -24.57759 -23.81113 -23.29059 -22.94889 -20.72157 -18.67556 -18.00018 -17.59163 -16.66900 -16.56330 -16.06919 -15.66209 -15.48057 -14.98616 -14.75179 -14.27861 -14.11333 -13.52674 -13.26855 -13.15773 -13.09581 -12.78698 -12.70163 -12.38333 -12.06207 -12.00107 -11.80511 -11.45847 -11.36390 -11.28135 -11.19988 -10.90378 -10.31634 -10.25742 -8.34172 -6.46794 1.38387 1.40393 1.55214 2.33770 2.70932 2.99321 3.16604 3.76392 3.82498 4.05484 4.12908 4.20841 4.29251 4.31668 4.35054 4.54491 4.55129 4.57566 4.61542 4.69397 4.73581 4.86281 4.97094 5.09046 5.12896 5.15160 5.23920 5.25482 5.31000 5.40569 5.51948 5.52918 5.93700 6.38133 6.52420 6.80043 7.25293 8.78628 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.036561 B = 0.004756 C = 0.004441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.657807 B = 5886.088961 C = 6302.854164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.007 3.993 3 Si 0.985 3.015 4 H -0.266 1.266 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.550 4.550 8 H 0.058 0.942 9 C 0.207 3.793 10 O -0.408 6.408 11 C 0.051 3.949 12 C 0.074 3.926 13 O -0.405 6.405 14 C 0.083 3.917 15 C -0.143 4.143 16 C -0.111 4.111 17 C -0.123 4.123 18 C -0.109 4.109 19 C -0.117 4.117 20 H 0.272 0.728 21 H -0.009 1.009 22 H -0.016 1.016 23 H 0.069 0.931 24 H 0.042 0.958 25 H 0.054 0.946 26 H 0.094 0.906 27 H 0.075 0.925 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.134 -17.849 2.567 21.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.588 4.588 8 H 0.076 0.924 9 C 0.132 3.868 10 O -0.328 6.328 11 C -0.026 4.026 12 C -0.002 4.002 13 O -0.325 6.325 14 C 0.026 3.974 15 C -0.181 4.181 16 C -0.148 4.148 17 C -0.160 4.160 18 C -0.147 4.147 19 C -0.155 4.155 20 H 0.081 0.919 21 H 0.009 0.991 22 H 0.002 0.998 23 H 0.087 0.913 24 H 0.060 0.940 25 H 0.072 0.928 26 H 0.112 0.888 27 H 0.093 0.907 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.070 0.930 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.139 -17.587 2.711 20.993 hybrid contribution -0.401 0.894 -0.236 1.008 sum 10.738 -16.693 2.475 20.002 Atomic orbital electron populations 1.70072 1.07736 1.28677 1.50449 1.25972 0.96004 1.03387 0.93761 0.85116 0.78530 0.77157 0.78464 1.19045 1.19269 1.19499 1.21407 0.93993 0.90972 1.52415 0.92365 1.19861 0.88654 0.84750 0.93536 1.87871 1.35397 1.14314 1.95213 1.22664 0.95521 0.83960 1.00471 1.22591 0.93109 0.97318 0.87201 1.88017 1.48236 1.57686 1.38529 1.22311 0.86658 0.90617 0.97798 1.22039 0.96097 0.99403 1.00585 1.21486 0.97499 0.98352 0.97510 1.21601 0.97912 1.01119 0.95374 1.21480 0.93594 0.97447 1.02143 1.21610 0.99990 0.99634 0.94247 0.91932 0.99145 0.99838 0.91262 0.93973 0.92815 0.88813 0.90655 0.92739 0.93372 0.91241 0.90659 0.92749 0.89944 0.90307 0.90578 0.92955 0.91333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.23 13.29 21.45 0.28 -56.94 16 2 C 0.01 0.43 5.46 84.65 0.46 0.89 16 3 Si 0.98 45.66 29.54 68.60 2.03 47.69 16 4 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 5 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 7 C -0.55 -34.39 9.43 25.60 0.24 -34.15 16 8 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 9 C 0.21 12.29 5.69 71.24 0.41 12.69 16 10 O -0.41 -21.63 10.29 -144.34 -1.49 -23.12 16 11 C 0.05 2.02 6.32 71.98 0.45 2.47 16 12 C 0.07 2.35 6.13 71.98 0.44 2.79 16 13 O -0.40 -14.27 9.95 -144.34 -1.44 -15.71 16 14 C 0.08 2.15 2.61 30.59 0.08 2.23 16 15 C -0.14 -3.63 5.54 30.59 0.17 -3.46 16 16 C -0.11 -1.97 5.92 30.60 0.18 -1.79 16 17 C -0.12 -1.94 5.92 30.60 0.18 -1.76 16 18 C -0.11 -1.72 5.92 30.58 0.18 -1.54 16 19 C -0.12 -2.64 5.57 30.58 0.17 -2.47 16 20 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 21 H -0.01 -0.55 8.14 -2.38 -0.02 -0.57 16 22 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 23 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 24 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 25 H 0.05 1.68 7.87 -2.39 -0.02 1.66 16 26 H 0.09 2.19 8.08 -2.39 -0.02 2.17 16 27 H 0.08 1.60 7.79 -2.39 -0.02 1.58 16 28 H 0.05 1.45 7.87 -2.39 -0.02 1.44 16 29 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -71.18 302.49 3.36 -67.82 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: 1.00 Total: 4.34 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 2.97 Total: -24.08 kcal Atomic # 7 Polarization: -57.23 SS G_CDS: 0.28 Total: -56.94 kcal Atomic # 8 Polarization: -35.90 SS G_CDS: -2.92 Total: -38.83 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.69 kcal Total: -71.18 3.36 -67.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385300343.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.297 kcal (2) G-P(sol) polarization free energy of solvation -71.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds