Wall clock time and date at job start Mon Mar 30 2020 03:22:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42905 * 1
3 3 C 1.42906 * 113.99750 * 2 1
4 4 H 1.09000 * 109.46776 * 16.35808 * 3 2 1
5 5 C 1.53000 * 109.47080 * 256.36100 * 3 2 1
6 6 C 1.52993 * 109.47236 * 305.34891 * 5 3 2
7 7 C 1.53007 * 109.47127 * 65.34641 * 5 3 2
8 8 C 1.53000 * 109.47141 * 136.36089 * 3 2 1
9 9 H 1.08999 * 109.81817 * 57.65239 * 8 3 2
10 10 C 1.54378 * 109.82892 * 296.76788 * 8 3 2
11 11 C 1.55306 * 102.24849 * 219.04057 * 10 8 3
12 12 C 1.54946 * 100.94710 * 34.13025 * 11 10 8
13 13 H 1.09002 * 110.30513 * 82.56695 * 12 11 10
14 14 C 1.50699 * 110.31376 * 204.63975 * 12 11 10
15 15 H 1.08004 * 119.99531 * 0.02562 * 14 12 11
16 16 C 1.37876 * 120.00099 * 179.97438 * 14 12 11
17 17 N 1.31514 * 119.99747 * 359.97438 * 16 14 12
18 18 Si 1.86801 * 119.99909 * 180.02562 * 16 14 12
19 19 H 1.48491 * 109.46865 * 269.99936 * 18 16 14
20 20 H 1.48499 * 109.47250 * 30.00103 * 18 16 14
21 21 H 1.48500 * 109.47052 * 149.99798 * 18 16 14
22 22 O 1.43231 * 109.90307 * 178.58456 * 8 3 2
23 23 H 1.09005 * 109.46948 * 174.40653 * 1 2 3
24 24 H 1.09002 * 109.47126 * 294.40656 * 1 2 3
25 25 H 1.08999 * 109.46989 * 54.40611 * 1 2 3
26 26 H 1.08994 * 109.47223 * 185.34247 * 5 3 2
27 27 H 1.08998 * 109.47598 * 54.39456 * 6 5 3
28 28 H 1.09002 * 109.47329 * 174.40151 * 6 5 3
29 29 H 1.09003 * 109.46665 * 294.39733 * 6 5 3
30 30 H 1.09007 * 109.47168 * 294.86991 * 7 5 3
31 31 H 1.08999 * 109.46946 * 54.86748 * 7 5 3
32 32 H 1.08996 * 109.47313 * 174.87121 * 7 5 3
33 33 H 1.08997 * 110.85375 * 100.85048 * 10 8 3
34 34 H 1.09004 * 111.02283 * 337.30023 * 10 8 3
35 35 H 1.09006 * 111.12538 * 276.21006 * 11 10 8
36 36 H 1.09001 * 111.12645 * 152.05047 * 11 10 8
37 37 H 0.96997 * 120.00600 * 0.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 1 1.2571 2.0384 0.2894
5 6 2.5284 1.6331 -1.4018
6 6 3.4856 0.5318 -1.8620
7 6 1.3496 1.7229 -2.3732
8 6 3.1714 1.3469 0.9955
9 1 3.9085 0.5873 0.7352
10 6 2.6447 1.0974 2.4250
11 6 3.4960 2.0865 3.2671
12 6 3.6552 3.2611 2.2692
13 1 2.7750 3.9035 2.2976
14 6 4.8934 4.0573 2.5916
15 1 5.5193 3.7691 3.4233
16 6 5.2277 5.1529 1.8242
17 7 4.4663 5.5027 0.8106
18 14 6.7630 6.1393 2.2234
19 1 6.4201 7.2239 3.1779
20 1 7.7805 5.2462 2.8336
21 1 7.3089 6.7319 0.9760
22 8 3.7819 2.6424 0.9790
23 1 -0.3633 -1.0228 -0.1002
24 1 -0.3633 0.4246 0.9358
25 1 -0.3633 0.5981 -0.8357
26 1 3.0552 2.5870 -1.3807
27 1 2.9888 -0.4356 -1.7883
28 1 3.7771 0.7127 -2.8966
29 1 4.3729 0.5338 -1.2289
30 1 0.8779 0.7444 -2.4637
31 1 0.6230 2.4431 -1.9971
32 1 1.7081 2.0452 -3.3508
33 1 2.8290 0.0681 2.7323
34 1 1.5842 1.3386 2.4987
35 1 4.4634 1.6537 3.5220
36 1 2.9606 2.4017 4.1627
37 1 3.6693 4.9903 0.6030
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000386417831.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:22:14
Heat of formation + Delta-G solvation = -115.985349 kcal
Electronic energy + Delta-G solvation = -17198.098029 eV
Core-core repulsion = 14553.780658 eV
Total energy + Delta-G solvation = -2644.317371 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 228.151 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-39.25994 -37.34764 -34.22479 -32.74195 -31.04382 -29.35648 -27.06761 -26.51567
-25.12598 -23.30696 -20.84316 -20.46638 -19.33013 -17.08814 -16.58129 -15.59268
-15.36050 -14.68229 -14.12550 -13.71123 -13.64068 -13.40976 -13.17364 -12.79382
-12.31568 -12.13356 -11.81908 -11.45457 -11.22951 -11.03136 -10.78382 -10.74474
-10.66740 -10.46539 -10.30071 -10.19308 -10.08463 -9.80919 -9.13207 -8.80705
-8.46797 -7.96030 -6.35761 -4.13213 3.43900 3.48787 3.64513 3.95426
4.54014 4.91318 5.10579 5.26449 5.34524 5.45399 5.46709 5.47188
5.56850 5.64991 5.71480 5.72959 5.89405 5.96585 6.14088 6.16186
6.17677 6.21528 6.27478 6.38676 6.48745 6.52653 6.66191 6.71284
6.76721 6.83650 7.30281 7.53749 8.09344 8.34287 8.57799 8.88584
9.69098 11.05672
Molecular weight = 228.15amu
Principal moments of inertia in cm(-1)
A = 0.033295 B = 0.008123 C = 0.007131
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 840.756272 B = 3445.999214 C = 3925.660696
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.030 3.970
2 O -0.379 6.379
3 C 0.088 3.912
4 H 0.058 0.942
5 C -0.109 4.109
6 C -0.137 4.137
7 C -0.145 4.145
8 C 0.078 3.922
9 H 0.069 0.931
10 C -0.145 4.145
11 C -0.140 4.140
12 C 0.191 3.809
13 H 0.019 0.981
14 C -0.607 4.607
15 H 0.055 0.945
16 C 0.031 3.969
17 N -0.891 5.891
18 Si 1.072 2.928
19 H -0.287 1.287
20 H -0.288 1.288
21 H -0.283 1.283
22 O -0.366 6.366
23 H 0.079 0.921
24 H 0.036 0.964
25 H 0.041 0.959
26 H 0.092 0.908
27 H 0.056 0.944
28 H 0.045 0.955
29 H 0.056 0.944
30 H 0.052 0.948
31 H 0.048 0.952
32 H 0.052 0.948
33 H 0.066 0.934
34 H 0.059 0.941
35 H 0.067 0.933
36 H 0.061 0.939
37 H 0.278 0.722
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.720 -8.997 -2.231 11.450
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.067 4.067
2 O -0.298 6.298
3 C 0.030 3.970
4 H 0.076 0.924
5 C -0.128 4.128
6 C -0.194 4.194
7 C -0.202 4.202
8 C 0.019 3.981
9 H 0.087 0.913
10 C -0.183 4.183
11 C -0.178 4.178
12 C 0.136 3.864
13 H 0.036 0.964
14 C -0.644 4.644
15 H 0.074 0.926
16 C -0.177 4.177
17 N -0.526 5.526
18 Si 0.900 3.100
19 H -0.214 1.214
20 H -0.214 1.214
21 H -0.209 1.209
22 O -0.286 6.286
23 H 0.097 0.903
24 H 0.055 0.945
25 H 0.060 0.940
26 H 0.111 0.889
27 H 0.075 0.925
28 H 0.064 0.936
29 H 0.075 0.925
30 H 0.071 0.929
31 H 0.067 0.933
32 H 0.071 0.929
33 H 0.085 0.915
34 H 0.078 0.922
35 H 0.086 0.914
36 H 0.080 0.920
37 H 0.090 0.910
Dipole moment (debyes) X Y Z Total
from point charges -5.627 -7.768 -2.885 10.016
hybrid contribution -1.349 -1.276 0.676 1.976
sum -6.976 -9.044 -2.209 11.633
Atomic orbital electron populations
1.22818 0.82111 1.01957 0.99812 1.87828 1.18670 1.28329 1.95003
1.22578 0.95315 0.83635 0.95485 0.92387 1.21468 0.96565 1.00834
0.93901 1.21680 0.99196 0.98442 1.00086 1.21880 0.98233 1.00894
0.99243 1.22528 0.93150 0.89580 0.92861 0.91284 1.23038 0.99444
0.99841 0.95993 1.23213 0.98967 0.96925 0.98706 1.20722 0.97169
0.89749 0.78737 0.96358 1.22010 1.11652 1.13369 1.17366 0.92636
1.25870 1.02510 0.96068 0.93215 1.70650 1.14602 1.41290 1.26044
0.83526 0.74972 0.75539 0.75996 1.21420 1.21423 1.20907 1.88771
1.76693 1.26870 1.36313 0.90286 0.94547 0.94018 0.88931 0.92528
0.93574 0.92456 0.92919 0.93307 0.92868 0.91522 0.92228 0.91430
0.92027 0.91031
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.37 10.38 101.05 1.05 1.42 16
2 O -0.38 -6.04 8.83 -35.23 -0.31 -6.35 16
3 C 0.09 1.56 1.58 -26.73 -0.04 1.52 16
4 H 0.06 1.06 7.65 -51.93 -0.40 0.66 16
5 C -0.11 -1.89 2.67 -90.62 -0.24 -2.13 16
6 C -0.14 -2.21 8.71 37.15 0.32 -1.88 16
7 C -0.15 -2.09 8.08 37.16 0.30 -1.78 16
8 C 0.08 1.59 3.00 -26.01 -0.08 1.51 16
9 H 0.07 1.42 6.84 -51.93 -0.36 1.06 16
10 C -0.15 -2.72 6.29 -24.79 -0.16 -2.88 16
11 C -0.14 -3.00 6.53 -24.48 -0.16 -3.16 16
12 C 0.19 4.96 2.78 -26.86 -0.07 4.88 16
13 H 0.02 0.51 7.95 -51.93 -0.41 0.10 16
14 C -0.61 -17.43 8.79 -34.44 -0.30 -17.73 16
15 H 0.06 1.57 7.76 -52.48 -0.41 1.16 16
16 C 0.03 0.91 5.43 -17.82 -0.10 0.82 16
17 N -0.89 -27.31 13.58 55.43 0.75 -26.56 16
18 Si 1.07 25.42 29.90 -169.99 -5.08 20.33 16
19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16
20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16
21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16
22 O -0.37 -9.30 8.98 -35.23 -0.32 -9.62 16
23 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16
24 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16
25 H 0.04 0.48 6.36 -51.93 -0.33 0.15 16
26 H 0.09 1.90 7.50 -51.93 -0.39 1.51 16
27 H 0.06 0.87 7.37 -51.93 -0.38 0.48 16
28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16
29 H 0.06 1.00 6.91 -51.93 -0.36 0.64 16
30 H 0.05 0.69 6.93 -51.93 -0.36 0.33 16
31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16
32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16
33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16
34 H 0.06 1.05 7.84 -51.93 -0.41 0.64 16
35 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16
36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16
37 H 0.28 8.59 6.65 -40.82 -0.27 8.32 16
LS Contribution 291.66 15.07 4.40 4.40
Total: -1.00 -30.68 291.66 -6.29 -36.97
By element:
Atomic # 1 Polarization: 6.48 SS G_CDS: -6.24 Total: 0.24 kcal
Atomic # 6 Polarization: -19.93 SS G_CDS: 0.52 Total: -19.41 kcal
Atomic # 7 Polarization: -27.31 SS G_CDS: 0.75 Total: -26.56 kcal
Atomic # 8 Polarization: -15.34 SS G_CDS: -0.63 Total: -15.96 kcal
Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.33 kcal
Total LS contribution 4.40 Total: 4.40 kcal
Total: -30.68 -6.29 -36.97 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000386417831.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -79.014 kcal
(2) G-P(sol) polarization free energy of solvation -30.684 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.698 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.287 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.971 kcal
(6) G-S(sol) free energy of system = (1) + (5) -115.985 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds