Wall clock time and date at job start Mon Mar 30 2020 03:22:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42906 * 113.99750 * 2 1 4 4 H 1.09000 * 109.46776 * 16.35808 * 3 2 1 5 5 C 1.53000 * 109.47080 * 256.36100 * 3 2 1 6 6 C 1.52993 * 109.47236 * 305.34891 * 5 3 2 7 7 C 1.53007 * 109.47127 * 65.34641 * 5 3 2 8 8 C 1.53000 * 109.47141 * 136.36089 * 3 2 1 9 9 H 1.08999 * 109.81817 * 57.65239 * 8 3 2 10 10 C 1.54378 * 109.82892 * 296.76788 * 8 3 2 11 11 C 1.55306 * 102.24849 * 219.04057 * 10 8 3 12 12 C 1.54946 * 100.94710 * 34.13025 * 11 10 8 13 13 H 1.09002 * 110.30513 * 82.56695 * 12 11 10 14 14 C 1.50699 * 110.31376 * 204.63975 * 12 11 10 15 15 H 1.08004 * 119.99531 * 0.02562 * 14 12 11 16 16 C 1.37876 * 120.00099 * 179.97438 * 14 12 11 17 17 N 1.31514 * 119.99747 * 359.97438 * 16 14 12 18 18 Si 1.86801 * 119.99909 * 180.02562 * 16 14 12 19 19 H 1.48491 * 109.46865 * 269.99936 * 18 16 14 20 20 H 1.48499 * 109.47250 * 30.00103 * 18 16 14 21 21 H 1.48500 * 109.47052 * 149.99798 * 18 16 14 22 22 O 1.43231 * 109.90307 * 178.58456 * 8 3 2 23 23 H 1.09005 * 109.46948 * 174.40653 * 1 2 3 24 24 H 1.09002 * 109.47126 * 294.40656 * 1 2 3 25 25 H 1.08999 * 109.46989 * 54.40611 * 1 2 3 26 26 H 1.08994 * 109.47223 * 185.34247 * 5 3 2 27 27 H 1.08998 * 109.47598 * 54.39456 * 6 5 3 28 28 H 1.09002 * 109.47329 * 174.40151 * 6 5 3 29 29 H 1.09003 * 109.46665 * 294.39733 * 6 5 3 30 30 H 1.09007 * 109.47168 * 294.86991 * 7 5 3 31 31 H 1.08999 * 109.46946 * 54.86748 * 7 5 3 32 32 H 1.08996 * 109.47313 * 174.87121 * 7 5 3 33 33 H 1.08997 * 110.85375 * 100.85048 * 10 8 3 34 34 H 1.09004 * 111.02283 * 337.30023 * 10 8 3 35 35 H 1.09006 * 111.12538 * 276.21006 * 11 10 8 36 36 H 1.09001 * 111.12645 * 152.05047 * 11 10 8 37 37 H 0.96997 * 120.00600 * 0.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2571 2.0384 0.2894 5 6 2.5284 1.6331 -1.4018 6 6 3.4856 0.5318 -1.8620 7 6 1.3496 1.7229 -2.3732 8 6 3.1714 1.3469 0.9955 9 1 3.9085 0.5873 0.7352 10 6 2.6447 1.0974 2.4250 11 6 3.4960 2.0865 3.2671 12 6 3.6552 3.2611 2.2692 13 1 2.7750 3.9035 2.2976 14 6 4.8934 4.0573 2.5916 15 1 5.5193 3.7691 3.4233 16 6 5.2277 5.1529 1.8242 17 7 4.4663 5.5027 0.8106 18 14 6.7630 6.1393 2.2234 19 1 6.4201 7.2239 3.1779 20 1 7.7805 5.2462 2.8336 21 1 7.3089 6.7319 0.9760 22 8 3.7819 2.6424 0.9790 23 1 -0.3633 -1.0228 -0.1002 24 1 -0.3633 0.4246 0.9358 25 1 -0.3633 0.5981 -0.8357 26 1 3.0552 2.5870 -1.3807 27 1 2.9888 -0.4356 -1.7883 28 1 3.7771 0.7127 -2.8966 29 1 4.3729 0.5338 -1.2289 30 1 0.8779 0.7444 -2.4637 31 1 0.6230 2.4431 -1.9971 32 1 1.7081 2.0452 -3.3508 33 1 2.8290 0.0681 2.7323 34 1 1.5842 1.3386 2.4987 35 1 4.4634 1.6537 3.5220 36 1 2.9606 2.4017 4.1627 37 1 3.6693 4.9903 0.6030 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386417831.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:14 Heat of formation + Delta-G solvation = -115.985349 kcal Electronic energy + Delta-G solvation = -17198.098029 eV Core-core repulsion = 14553.780658 eV Total energy + Delta-G solvation = -2644.317371 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.25994 -37.34764 -34.22479 -32.74195 -31.04382 -29.35648 -27.06761 -26.51567 -25.12598 -23.30696 -20.84316 -20.46638 -19.33013 -17.08814 -16.58129 -15.59268 -15.36050 -14.68229 -14.12550 -13.71123 -13.64068 -13.40976 -13.17364 -12.79382 -12.31568 -12.13356 -11.81908 -11.45457 -11.22951 -11.03136 -10.78382 -10.74474 -10.66740 -10.46539 -10.30071 -10.19308 -10.08463 -9.80919 -9.13207 -8.80705 -8.46797 -7.96030 -6.35761 -4.13213 3.43900 3.48787 3.64513 3.95426 4.54014 4.91318 5.10579 5.26449 5.34524 5.45399 5.46709 5.47188 5.56850 5.64991 5.71480 5.72959 5.89405 5.96585 6.14088 6.16186 6.17677 6.21528 6.27478 6.38676 6.48745 6.52653 6.66191 6.71284 6.76721 6.83650 7.30281 7.53749 8.09344 8.34287 8.57799 8.88584 9.69098 11.05672 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.033295 B = 0.008123 C = 0.007131 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.756272 B = 3445.999214 C = 3925.660696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.379 6.379 3 C 0.088 3.912 4 H 0.058 0.942 5 C -0.109 4.109 6 C -0.137 4.137 7 C -0.145 4.145 8 C 0.078 3.922 9 H 0.069 0.931 10 C -0.145 4.145 11 C -0.140 4.140 12 C 0.191 3.809 13 H 0.019 0.981 14 C -0.607 4.607 15 H 0.055 0.945 16 C 0.031 3.969 17 N -0.891 5.891 18 Si 1.072 2.928 19 H -0.287 1.287 20 H -0.288 1.288 21 H -0.283 1.283 22 O -0.366 6.366 23 H 0.079 0.921 24 H 0.036 0.964 25 H 0.041 0.959 26 H 0.092 0.908 27 H 0.056 0.944 28 H 0.045 0.955 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.067 0.933 36 H 0.061 0.939 37 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.720 -8.997 -2.231 11.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.298 6.298 3 C 0.030 3.970 4 H 0.076 0.924 5 C -0.128 4.128 6 C -0.194 4.194 7 C -0.202 4.202 8 C 0.019 3.981 9 H 0.087 0.913 10 C -0.183 4.183 11 C -0.178 4.178 12 C 0.136 3.864 13 H 0.036 0.964 14 C -0.644 4.644 15 H 0.074 0.926 16 C -0.177 4.177 17 N -0.526 5.526 18 Si 0.900 3.100 19 H -0.214 1.214 20 H -0.214 1.214 21 H -0.209 1.209 22 O -0.286 6.286 23 H 0.097 0.903 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.111 0.889 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.080 0.920 37 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.627 -7.768 -2.885 10.016 hybrid contribution -1.349 -1.276 0.676 1.976 sum -6.976 -9.044 -2.209 11.633 Atomic orbital electron populations 1.22818 0.82111 1.01957 0.99812 1.87828 1.18670 1.28329 1.95003 1.22578 0.95315 0.83635 0.95485 0.92387 1.21468 0.96565 1.00834 0.93901 1.21680 0.99196 0.98442 1.00086 1.21880 0.98233 1.00894 0.99243 1.22528 0.93150 0.89580 0.92861 0.91284 1.23038 0.99444 0.99841 0.95993 1.23213 0.98967 0.96925 0.98706 1.20722 0.97169 0.89749 0.78737 0.96358 1.22010 1.11652 1.13369 1.17366 0.92636 1.25870 1.02510 0.96068 0.93215 1.70650 1.14602 1.41290 1.26044 0.83526 0.74972 0.75539 0.75996 1.21420 1.21423 1.20907 1.88771 1.76693 1.26870 1.36313 0.90286 0.94547 0.94018 0.88931 0.92528 0.93574 0.92456 0.92919 0.93307 0.92868 0.91522 0.92228 0.91430 0.92027 0.91031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.38 101.05 1.05 1.42 16 2 O -0.38 -6.04 8.83 -35.23 -0.31 -6.35 16 3 C 0.09 1.56 1.58 -26.73 -0.04 1.52 16 4 H 0.06 1.06 7.65 -51.93 -0.40 0.66 16 5 C -0.11 -1.89 2.67 -90.62 -0.24 -2.13 16 6 C -0.14 -2.21 8.71 37.15 0.32 -1.88 16 7 C -0.15 -2.09 8.08 37.16 0.30 -1.78 16 8 C 0.08 1.59 3.00 -26.01 -0.08 1.51 16 9 H 0.07 1.42 6.84 -51.93 -0.36 1.06 16 10 C -0.15 -2.72 6.29 -24.79 -0.16 -2.88 16 11 C -0.14 -3.00 6.53 -24.48 -0.16 -3.16 16 12 C 0.19 4.96 2.78 -26.86 -0.07 4.88 16 13 H 0.02 0.51 7.95 -51.93 -0.41 0.10 16 14 C -0.61 -17.43 8.79 -34.44 -0.30 -17.73 16 15 H 0.06 1.57 7.76 -52.48 -0.41 1.16 16 16 C 0.03 0.91 5.43 -17.82 -0.10 0.82 16 17 N -0.89 -27.31 13.58 55.43 0.75 -26.56 16 18 Si 1.07 25.42 29.90 -169.99 -5.08 20.33 16 19 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 22 O -0.37 -9.30 8.98 -35.23 -0.32 -9.62 16 23 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 24 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.04 0.48 6.36 -51.93 -0.33 0.15 16 26 H 0.09 1.90 7.50 -51.93 -0.39 1.51 16 27 H 0.06 0.87 7.37 -51.93 -0.38 0.48 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 1.00 6.91 -51.93 -0.36 0.64 16 30 H 0.05 0.69 6.93 -51.93 -0.36 0.33 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.06 1.05 7.84 -51.93 -0.41 0.64 16 35 H 0.07 1.46 8.04 -51.93 -0.42 1.04 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.28 8.59 6.65 -40.82 -0.27 8.32 16 LS Contribution 291.66 15.07 4.40 4.40 Total: -1.00 -30.68 291.66 -6.29 -36.97 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -6.24 Total: 0.24 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 0.52 Total: -19.41 kcal Atomic # 7 Polarization: -27.31 SS G_CDS: 0.75 Total: -26.56 kcal Atomic # 8 Polarization: -15.34 SS G_CDS: -0.63 Total: -15.96 kcal Atomic # 14 Polarization: 25.42 SS G_CDS: -5.08 Total: 20.33 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.68 -6.29 -36.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386417831.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.014 kcal (2) G-P(sol) polarization free energy of solvation -30.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.971 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds