Wall clock time and date at job start Mon Mar 30 2020 03:27:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 H 1.09006 * 109.47396 * 55.00290 * 3 2 1 5 5 O 1.42895 * 109.47629 * 294.99900 * 3 2 1 6 6 C 1.42892 * 114.00538 * 149.99576 * 5 3 2 7 7 C 1.53003 * 109.46992 * 174.99670 * 3 2 1 8 8 H 1.09000 * 110.55078 * 59.30503 * 7 3 2 9 9 C 1.54993 * 110.61818 * 182.17929 * 7 3 2 10 10 C 1.54806 * 102.09420 * 155.52824 * 9 7 3 11 11 C 1.54104 * 104.18757 * 339.11600 * 10 9 7 12 12 C 1.52995 * 109.87749 * 117.39256 * 11 10 9 13 13 C 1.50696 * 109.88321 * 238.54787 * 11 10 9 14 14 H 1.07999 * 119.99727 * 0.02562 * 13 11 10 15 15 C 1.37871 * 119.99997 * 179.97438 * 13 11 10 16 16 N 1.31520 * 120.00127 * 179.97438 * 15 13 11 17 17 Si 1.86800 * 120.00292 * 0.02562 * 15 13 11 18 18 H 1.48498 * 109.46855 * 89.99723 * 17 15 13 19 19 H 1.48498 * 109.47097 * 209.99963 * 17 15 13 20 20 H 1.48496 * 109.47018 * 330.00068 * 17 15 13 21 21 O 1.43890 * 107.37279 * 358.10705 * 11 10 9 22 22 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 23 23 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 25 25 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 26 26 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 27 27 H 1.08998 * 109.47286 * 180.02562 * 6 5 3 28 28 H 1.08996 * 109.47906 * 300.00862 * 6 5 3 29 29 H 1.09010 * 109.46914 * 60.00161 * 6 5 3 30 30 H 1.09001 * 110.91113 * 273.72523 * 9 7 3 31 31 H 1.09005 * 110.91070 * 37.32690 * 9 7 3 32 32 H 1.08993 * 110.49208 * 97.79735 * 10 9 7 33 33 H 1.09005 * 110.48769 * 220.44891 * 10 9 7 34 34 H 1.09008 * 109.47107 * 60.00311 * 12 11 10 35 35 H 1.08998 * 109.47199 * 180.02562 * 12 11 10 36 36 H 1.09000 * 109.47498 * 300.00847 * 12 11 10 37 37 H 0.96993 * 120.00288 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9816 0.8419 5 8 1.6621 2.0814 -1.2210 6 6 1.4560 3.4902 -1.1002 7 6 3.5649 1.4443 0.1258 8 1 4.0178 0.8984 -0.7019 9 6 4.1061 2.8955 0.1835 10 6 5.4538 2.7099 0.9222 11 6 5.2988 1.3653 1.6588 12 6 6.3309 0.3639 1.1364 13 6 5.4823 1.5685 3.1407 14 1 5.6889 2.5549 3.5289 15 6 5.3854 0.4954 4.0009 16 7 5.5460 0.6727 5.2942 17 14 5.0274 -1.2106 3.3295 18 1 6.3060 -1.8967 3.0142 19 1 4.2815 -1.9959 4.3455 20 1 4.2100 -1.0952 2.0951 21 8 3.9714 0.8790 1.3906 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5138 0.8900 26 1 1.8934 -0.5138 -0.8900 27 1 1.1716 3.9002 -2.0693 28 1 0.6620 3.6809 -0.3783 29 1 2.3770 3.9644 -0.7608 30 1 4.2637 3.2921 -0.8195 31 1 3.4354 3.5385 0.7535 32 1 6.2765 2.6616 0.2088 33 1 5.6128 3.5192 1.6350 34 1 7.3344 0.7540 1.3072 35 1 6.2151 -0.5843 1.6612 36 1 6.1784 0.2087 0.0684 37 1 5.4782 -0.0823 5.8993 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386444467.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:54 Heat of formation + Delta-G solvation = -113.477704 kcal Electronic energy + Delta-G solvation = -17369.265574 eV Core-core repulsion = 14725.056943 eV Total energy + Delta-G solvation = -2644.208631 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.85482 -38.83943 -35.10414 -34.32387 -32.86866 -32.27114 -28.94507 -27.48400 -27.03710 -24.82749 -22.43924 -21.90991 -21.13683 -19.01426 -17.89050 -17.32605 -16.45670 -16.33811 -15.85687 -15.50749 -14.92505 -14.74387 -14.54889 -14.45641 -14.06639 -13.98426 -13.24743 -13.11548 -12.88427 -12.65363 -12.46256 -12.19745 -12.14380 -11.95785 -11.81896 -11.56330 -11.49896 -11.38882 -10.86014 -10.71935 -10.42856 -10.03375 -8.34488 -6.45057 1.32058 1.40395 1.65682 2.39744 2.66319 3.01907 3.47196 3.68518 3.95235 4.07377 4.17937 4.20795 4.36768 4.45480 4.54005 4.56615 4.57615 4.69978 4.70198 4.76174 4.83111 4.92093 4.95277 4.99542 5.02647 5.14672 5.17230 5.21019 5.27755 5.44192 5.49524 5.66073 6.19414 6.27424 6.46933 6.73693 7.31584 8.79930 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.028338 B = 0.010327 C = 0.008722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.833418 B = 2710.754458 C = 3209.457659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.120 4.120 3 C 0.104 3.896 4 H 0.057 0.943 5 O -0.385 6.385 6 C 0.012 3.988 7 C 0.041 3.959 8 H 0.066 0.934 9 C -0.136 4.136 10 C -0.130 4.130 11 C 0.184 3.816 12 C -0.157 4.157 13 C -0.516 4.516 14 H 0.040 0.960 15 C 0.028 3.972 16 N -0.942 5.942 17 Si 0.939 3.061 18 H -0.279 1.279 19 H -0.311 1.311 20 H -0.208 1.208 21 O -0.383 6.383 22 H 0.064 0.936 23 H 0.064 0.936 24 H 0.048 0.952 25 H 0.063 0.937 26 H 0.070 0.930 27 H 0.105 0.895 28 H 0.044 0.956 29 H 0.052 0.948 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.056 0.944 34 H 0.064 0.936 35 H 0.031 0.969 36 H 0.063 0.937 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.390 1.822 -14.825 16.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.158 4.158 3 C 0.046 3.954 4 H 0.075 0.925 5 O -0.304 6.304 6 C -0.084 4.084 7 C -0.017 4.017 8 H 0.084 0.916 9 C -0.173 4.173 10 C -0.167 4.167 11 C 0.146 3.854 12 C -0.214 4.214 13 C -0.553 4.553 14 H 0.058 0.942 15 C -0.171 4.171 16 N -0.582 5.582 17 Si 0.767 3.233 18 H -0.206 1.206 19 H -0.240 1.240 20 H -0.131 1.131 21 O -0.303 6.303 22 H 0.083 0.917 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.124 0.876 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.115 0.885 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.082 0.918 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -7.531 1.532 -14.721 16.606 hybrid contribution 0.367 -0.358 0.835 0.980 sum -7.164 1.173 -13.886 15.669 Atomic orbital electron populations 1.21673 0.94031 1.02231 1.01932 1.21579 0.97473 0.94365 1.02338 1.21929 0.91748 0.94815 0.86880 0.92495 1.87840 1.88833 1.21910 1.31778 1.23204 1.00723 0.80802 1.03624 1.23650 0.95736 0.93664 0.88624 0.91585 1.23167 0.96392 0.96838 1.00952 1.22833 0.98078 0.97273 0.98559 1.20072 0.80772 0.91186 0.93365 1.22416 1.00178 0.98951 0.99834 1.21291 1.48322 0.94809 0.90903 0.94191 1.25864 0.92884 1.03668 0.94636 1.70049 1.51078 1.33016 1.04048 0.86123 0.78645 0.78674 0.79880 1.20634 1.24004 1.13087 1.89191 1.33813 1.70637 1.36708 0.91723 0.91664 0.93249 0.91870 0.91094 0.87633 0.93776 0.92935 0.88536 0.91468 0.90053 0.92476 0.91654 0.94993 0.91800 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 9.81 71.98 0.71 -2.75 16 2 C -0.12 -3.59 5.59 30.60 0.17 -3.42 16 3 C 0.10 3.26 2.10 30.59 0.06 3.33 16 4 H 0.06 1.88 7.79 -2.38 -0.02 1.86 16 5 O -0.38 -10.49 9.83 -148.98 -1.46 -11.95 16 6 C 0.01 0.26 10.56 113.37 1.20 1.46 16 7 C 0.04 1.46 3.01 31.28 0.09 1.55 16 8 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 9 C -0.14 -4.35 4.74 31.89 0.15 -4.20 16 10 C -0.13 -4.92 6.26 31.58 0.20 -4.72 16 11 C 0.18 8.47 0.70 -11.17 -0.01 8.46 16 12 C -0.16 -6.55 8.09 71.98 0.58 -5.97 16 13 C -0.52 -29.70 8.87 25.60 0.23 -29.48 16 14 H 0.04 2.52 7.58 -2.91 -0.02 2.50 16 15 C 0.03 1.69 5.45 84.65 0.46 2.15 16 16 N -0.94 -59.98 13.96 21.45 0.30 -59.69 16 17 Si 0.94 46.98 23.91 68.60 1.64 48.62 16 18 H -0.28 -13.38 6.87 99.48 0.68 -12.70 16 19 H -0.31 -15.78 7.11 99.48 0.71 -15.08 16 20 H -0.21 -9.82 5.38 99.48 0.54 -9.28 16 21 O -0.38 -17.24 7.11 -148.98 -1.06 -18.29 16 22 H 0.06 1.47 7.82 -2.39 -0.02 1.46 16 23 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 25 H 0.06 2.17 7.70 -2.39 -0.02 2.15 16 26 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 27 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.04 0.88 8.08 -2.39 -0.02 0.86 16 29 H 0.05 1.11 4.82 -2.38 -0.01 1.10 16 30 H 0.10 2.49 7.63 -2.39 -0.02 2.47 16 31 H 0.07 2.16 7.16 -2.38 -0.02 2.14 16 32 H 0.08 2.65 7.70 -2.39 -0.02 2.63 16 33 H 0.06 2.32 7.40 -2.38 -0.02 2.30 16 34 H 0.06 2.61 8.14 -2.38 -0.02 2.59 16 35 H 0.03 1.42 3.17 -2.39 -0.01 1.41 16 36 H 0.06 2.24 8.12 -2.39 -0.02 2.23 16 37 H 0.27 15.92 8.31 -92.71 -0.77 15.15 16 Total: -1.00 -66.76 281.45 4.09 -62.67 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.83 Total: 12.22 kcal Atomic # 6 Polarization: -37.42 SS G_CDS: 3.84 Total: -33.58 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: 0.30 Total: -59.69 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -2.52 Total: -30.24 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 1.64 Total: 48.62 kcal Total: -66.76 4.09 -62.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386444467.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.806 kcal (2) G-P(sol) polarization free energy of solvation -66.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds