Wall clock time and date at job start Mon Mar 30 2020 03:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47395 * 2 1 4 4 H 1.08997 * 109.47136 * 55.00041 * 3 2 1 5 5 O 1.42901 * 109.47323 * 294.99933 * 3 2 1 6 6 C 1.42891 * 114.00029 * 151.91255 * 5 3 2 7 7 C 1.52998 * 109.47104 * 174.99814 * 3 2 1 8 8 H 1.08998 * 110.27842 * 187.31404 * 7 3 2 9 9 C 1.54948 * 110.30877 * 65.22201 * 7 3 2 10 10 C 1.55303 * 100.94113 * 204.63785 * 9 7 3 11 11 C 1.54382 * 102.25407 * 34.13808 * 10 9 7 12 12 C 1.52992 * 109.83432 * 98.24647 * 11 10 9 13 13 C 1.50704 * 109.82859 * 219.12675 * 11 10 9 14 14 H 1.08002 * 119.99731 * 0.02562 * 13 11 10 15 15 C 1.37876 * 119.99948 * 179.97438 * 13 11 10 16 16 N 1.31515 * 120.00149 * 179.97438 * 15 13 11 17 17 Si 1.86800 * 119.99945 * 0.02562 * 15 13 11 18 18 H 1.48507 * 109.47343 * 89.99432 * 17 15 13 19 19 H 1.48498 * 109.47003 * 209.99268 * 17 15 13 20 20 H 1.48502 * 109.47212 * 329.99414 * 17 15 13 21 21 O 1.43235 * 107.58730 * 338.63695 * 11 10 9 22 22 H 1.09004 * 109.47018 * 59.99652 * 1 2 3 23 23 H 1.08998 * 109.47501 * 179.97438 * 1 2 3 24 24 H 1.08999 * 109.46813 * 299.99927 * 1 2 3 25 25 H 1.08997 * 109.46838 * 239.99534 * 2 1 3 26 26 H 1.09004 * 109.47018 * 120.00348 * 2 1 3 27 27 H 1.09003 * 109.47170 * 184.80996 * 6 5 3 28 28 H 1.08998 * 109.47435 * 304.81371 * 6 5 3 29 29 H 1.09008 * 109.47343 * 64.81302 * 6 5 3 30 30 H 1.08997 * 111.12757 * 322.55753 * 9 7 3 31 31 H 1.09000 * 111.12111 * 86.72036 * 9 7 3 32 32 H 1.09007 * 110.84460 * 152.32689 * 10 9 7 33 33 H 1.09000 * 110.85165 * 275.73727 * 10 9 7 34 34 H 1.08998 * 109.47350 * 59.99423 * 12 11 10 35 35 H 1.09001 * 109.47082 * 180.02562 * 12 11 10 36 36 H 1.09003 * 109.47092 * 299.99869 * 12 11 10 37 37 H 0.96993 * 119.99754 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 8 1.6621 2.0814 -1.2210 6 6 1.4982 3.4965 -1.1100 7 6 3.5649 1.4442 0.1258 8 1 3.9319 2.4621 0.2570 9 6 4.2085 0.7977 -1.1267 10 6 5.5681 0.3213 -0.5467 11 6 5.1898 -0.0667 0.8989 12 6 4.9766 -1.5788 0.9917 13 6 6.2854 0.3539 1.8444 14 1 7.1666 0.8489 1.4638 15 6 6.1623 0.1077 3.1954 16 7 7.1186 0.4743 4.0205 17 14 4.6378 -0.7478 3.8537 18 1 4.8575 -2.2166 3.8586 19 1 4.3683 -0.2831 5.2381 20 1 3.4756 -0.4241 2.9878 21 8 3.9754 0.6182 1.2271 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8933 -0.5139 -0.8899 26 1 1.8933 -0.5139 0.8900 27 1 1.1292 3.8948 -2.0551 28 1 0.7827 3.7184 -0.3181 29 1 2.4576 3.9559 -0.8720 30 1 3.6160 -0.0453 -1.4821 31 1 4.3550 1.5337 -1.9173 32 1 5.9422 -0.5434 -1.0951 33 1 6.2988 1.1301 -0.5561 34 1 5.8951 -2.0933 0.7095 35 1 4.7095 -1.8460 2.0142 36 1 4.1728 -1.8745 0.3175 37 1 7.0321 0.3007 4.9709 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386444469.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:56 Heat of formation + Delta-G solvation = -114.290353 kcal Electronic energy + Delta-G solvation = -17448.366123 eV Core-core repulsion = 14804.122252 eV Total energy + Delta-G solvation = -2644.243870 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.87127 -38.79099 -35.14830 -34.17776 -33.01080 -32.15482 -28.75435 -27.33345 -27.06365 -24.70971 -23.37188 -21.33321 -21.10583 -18.64214 -17.57033 -17.41817 -16.96136 -16.53282 -15.74639 -15.41320 -14.86798 -14.65616 -14.60781 -14.22181 -14.02205 -13.83641 -13.47142 -13.07672 -12.82174 -12.64102 -12.32655 -12.27878 -11.99560 -11.97490 -11.88077 -11.78875 -11.53003 -11.05698 -10.79603 -10.79168 -10.56051 -9.84689 -8.33217 -6.43812 1.33021 1.40776 1.66524 2.41063 2.66848 3.04638 3.47890 3.77563 3.86421 4.07495 4.19601 4.27618 4.39450 4.46089 4.53703 4.56950 4.64071 4.71957 4.75518 4.78194 4.85847 4.91609 4.99742 5.03548 5.09800 5.19496 5.21770 5.25731 5.33989 5.50902 5.62355 5.67750 6.17582 6.26371 6.56458 6.77400 7.33898 8.81743 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.030264 B = 0.009912 C = 0.009103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.957966 B = 2824.270561 C = 3075.334922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.117 4.117 3 C 0.101 3.899 4 H 0.057 0.943 5 O -0.383 6.383 6 C 0.023 3.977 7 C 0.046 3.954 8 H 0.041 0.959 9 C -0.125 4.125 10 C -0.130 4.130 11 C 0.188 3.812 12 C -0.144 4.144 13 C -0.529 4.529 14 H 0.034 0.966 15 C 0.026 3.974 16 N -0.946 5.946 17 Si 0.943 3.057 18 H -0.277 1.277 19 H -0.313 1.313 20 H -0.207 1.207 21 O -0.384 6.384 22 H 0.062 0.938 23 H 0.064 0.936 24 H 0.049 0.951 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.106 0.894 28 H 0.048 0.952 29 H 0.035 0.965 30 H 0.087 0.913 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.031 0.969 36 H 0.068 0.932 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.878 0.344 -11.027 17.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.155 4.155 3 C 0.043 3.957 4 H 0.075 0.925 5 O -0.302 6.302 6 C -0.074 4.074 7 C -0.012 4.012 8 H 0.059 0.941 9 C -0.162 4.162 10 C -0.168 4.168 11 C 0.151 3.849 12 C -0.201 4.201 13 C -0.566 4.566 14 H 0.052 0.948 15 C -0.172 4.172 16 N -0.586 5.586 17 Si 0.771 3.229 18 H -0.204 1.204 19 H -0.242 1.242 20 H -0.130 1.130 21 O -0.305 6.305 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.124 0.876 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.106 0.894 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.069 0.931 34 H 0.083 0.917 35 H 0.050 0.950 36 H 0.087 0.913 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.956 0.234 -10.870 17.691 hybrid contribution 0.495 0.264 1.081 1.218 sum -13.461 0.499 -9.789 16.652 Atomic orbital electron populations 1.21681 0.94149 1.02181 1.01862 1.21573 0.97093 0.94034 1.02766 1.22040 0.91719 0.95252 0.86719 0.92470 1.87864 1.89008 1.21028 1.32255 1.22979 1.00159 0.80653 1.03573 1.23358 0.95464 0.94506 0.87890 0.94116 1.23054 0.95123 1.01063 0.96947 1.22982 0.97523 1.01173 0.95091 1.19993 0.82153 0.89934 0.92867 1.22223 1.01557 0.96275 1.00085 1.21562 1.03293 1.39122 0.92627 0.94816 1.25882 0.98770 0.95239 0.97316 1.70072 1.35570 1.48934 1.03994 0.86044 0.83107 0.77572 0.76192 1.20367 1.24178 1.12977 1.88633 1.42714 1.60875 1.38301 0.91938 0.91692 0.93174 0.90903 0.91346 0.87553 0.93321 0.94630 0.89447 0.89830 0.89765 0.93073 0.91683 0.95016 0.91340 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.20 9.81 71.98 0.71 -2.49 16 2 C -0.12 -3.31 5.21 30.59 0.16 -3.15 16 3 C 0.10 3.06 2.24 30.59 0.07 3.13 16 4 H 0.06 1.75 7.74 -2.39 -0.02 1.73 16 5 O -0.38 -10.25 9.42 -148.98 -1.40 -11.65 16 6 C 0.02 0.47 10.86 113.37 1.23 1.71 16 7 C 0.05 1.69 3.49 31.26 0.11 1.80 16 8 H 0.04 1.59 8.08 -2.39 -0.02 1.57 16 9 C -0.12 -4.03 6.04 32.05 0.19 -3.84 16 10 C -0.13 -5.02 6.07 31.85 0.19 -4.83 16 11 C 0.19 8.68 0.78 -11.07 -0.01 8.67 16 12 C -0.14 -5.96 8.22 71.98 0.59 -5.37 16 13 C -0.53 -30.72 8.83 25.60 0.23 -30.50 16 14 H 0.03 2.16 7.77 -2.91 -0.02 2.14 16 15 C 0.03 1.58 5.45 84.65 0.46 2.04 16 16 N -0.95 -60.75 13.96 21.45 0.30 -60.45 16 17 Si 0.94 47.03 23.91 68.60 1.64 48.67 16 18 H -0.28 -13.13 6.87 99.48 0.68 -12.45 16 19 H -0.31 -15.87 7.11 99.48 0.71 -15.16 16 20 H -0.21 -9.66 5.38 99.48 0.54 -9.13 16 21 O -0.38 -17.26 6.32 -148.98 -0.94 -18.20 16 22 H 0.06 1.34 7.82 -2.39 -0.02 1.32 16 23 H 0.06 1.28 8.14 -2.39 -0.02 1.27 16 24 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 25 H 0.07 1.96 6.55 -2.39 -0.02 1.95 16 26 H 0.07 2.21 7.33 -2.39 -0.02 2.19 16 27 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.05 0.93 7.97 -2.39 -0.02 0.91 16 29 H 0.03 0.79 8.08 -2.38 -0.02 0.77 16 30 H 0.09 2.57 6.27 -2.39 -0.01 2.55 16 31 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.08 2.87 7.82 -2.38 -0.02 2.85 16 33 H 0.05 2.13 7.66 -2.39 -0.02 2.11 16 34 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.03 1.39 3.18 -2.39 -0.01 1.38 16 36 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.26 15.99 8.31 -92.71 -0.77 15.22 16 Total: -1.00 -67.54 283.41 4.35 -63.19 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.83 Total: 11.28 kcal Atomic # 6 Polarization: -36.77 SS G_CDS: 3.93 Total: -32.84 kcal Atomic # 7 Polarization: -60.75 SS G_CDS: 0.30 Total: -60.45 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -2.35 Total: -29.85 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 1.64 Total: 48.67 kcal Total: -67.54 4.35 -63.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386444469.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.103 kcal (2) G-P(sol) polarization free energy of solvation -67.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds