Wall clock time and date at job start Mon Mar 30 2020 03:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46804 * 2 1 4 4 H 1.09001 * 109.47144 * 55.00555 * 3 2 1 5 5 O 1.42891 * 109.47316 * 294.99983 * 3 2 1 6 6 C 1.42899 * 114.00276 * 150.00299 * 5 3 2 7 7 C 1.53005 * 109.46693 * 174.99985 * 3 2 1 8 8 H 1.09006 * 110.55173 * 59.30227 * 7 3 2 9 9 C 1.54995 * 110.61638 * 182.17770 * 7 3 2 10 10 C 1.54814 * 102.09154 * 155.52640 * 9 7 3 11 11 C 1.54097 * 104.18584 * 339.11909 * 10 9 7 12 12 C 1.52999 * 109.88023 * 238.54316 * 11 10 9 13 13 C 1.50701 * 109.87894 * 117.39362 * 11 10 9 14 14 H 1.08009 * 119.99678 * 4.66796 * 13 11 10 15 15 C 1.37878 * 120.00299 * 184.66398 * 13 11 10 16 16 N 1.31507 * 119.99677 * 6.46817 * 15 13 11 17 17 Si 1.86803 * 120.00063 * 186.46793 * 15 13 11 18 18 H 1.48500 * 109.47075 * 85.19988 * 17 15 13 19 19 H 1.48493 * 109.47050 * 205.20103 * 17 15 13 20 20 H 1.48500 * 109.47160 * 325.20232 * 17 15 13 21 21 O 1.43883 * 107.37820 * 358.10451 * 11 10 9 22 22 H 1.08993 * 109.46963 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46921 * 299.99781 * 1 2 3 24 24 H 1.08996 * 109.47268 * 59.99825 * 1 2 3 25 25 H 1.08997 * 109.46921 * 240.00219 * 2 1 3 26 26 H 1.08996 * 109.47268 * 120.00175 * 2 1 3 27 27 H 1.09008 * 109.46653 * 300.00208 * 6 5 3 28 28 H 1.09002 * 109.47332 * 59.99717 * 6 5 3 29 29 H 1.09001 * 109.47789 * 180.02562 * 6 5 3 30 30 H 1.09000 * 110.91130 * 273.72503 * 9 7 3 31 31 H 1.09004 * 110.90496 * 37.32864 * 9 7 3 32 32 H 1.08996 * 110.48602 * 97.80024 * 10 9 7 33 33 H 1.08994 * 110.48357 * 220.44514 * 10 9 7 34 34 H 1.09000 * 109.46970 * 54.40928 * 12 11 10 35 35 H 1.09001 * 109.47108 * 174.40176 * 12 11 10 36 36 H 1.08997 * 109.47228 * 294.40518 * 12 11 10 37 37 H 0.97005 * 119.99617 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8419 5 8 1.6620 2.0815 -1.2210 6 6 1.4559 3.4903 -1.1002 7 6 3.5649 1.4444 0.1257 8 1 4.0177 0.8985 -0.7020 9 6 4.1060 2.8957 0.1834 10 6 5.4538 2.7101 0.9221 11 6 5.2988 1.3654 1.6586 12 6 5.4852 1.5718 3.1631 13 6 6.3154 0.3791 1.1441 14 1 7.0563 0.6935 0.4237 15 6 6.2999 -0.9245 1.5928 16 7 5.3242 -1.3406 2.3701 17 14 7.6648 -2.0994 1.0967 18 1 8.8117 -1.9471 2.0276 19 1 7.1618 -3.4953 1.1552 20 1 8.1059 -1.7897 -0.2870 21 8 3.9714 0.8791 1.3905 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.6618 3.6808 -0.3782 28 1 2.3768 3.9645 -0.7609 29 1 1.1714 3.9004 -2.0693 30 1 4.2636 3.2923 -0.8196 31 1 3.4352 3.5385 0.7535 32 1 6.2764 2.6618 0.2086 33 1 5.6127 3.5193 1.6348 34 1 4.8000 2.3446 3.5115 35 1 5.2766 0.6386 3.6864 36 1 6.5116 1.8791 3.3633 37 1 5.3130 -2.2579 2.6855 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000386444474.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:00 Heat of formation + Delta-G solvation = -102.115952 kcal Electronic energy + Delta-G solvation = -17303.907944 eV Core-core repulsion = 14660.191995 eV Total energy + Delta-G solvation = -2643.715949 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.97373 -37.15304 -33.30680 -32.50617 -30.86007 -29.97498 -27.37690 -25.78990 -25.12977 -23.12711 -20.79877 -20.22763 -19.32167 -16.51729 -16.40751 -15.41729 -14.84482 -14.61263 -14.32187 -13.51807 -13.41610 -13.18792 -12.80597 -12.45130 -11.98366 -11.82096 -11.40794 -11.29570 -11.16155 -10.84463 -10.77419 -10.67833 -10.58407 -10.38430 -10.34587 -10.05791 -9.87634 -9.29657 -9.14114 -8.97622 -8.44840 -7.83980 -5.90510 -4.05571 3.32326 3.39324 3.41783 4.10705 4.45948 5.07823 5.19714 5.40642 5.53775 5.57357 5.60812 5.65204 5.73943 5.82857 5.84731 5.87799 6.08359 6.23518 6.34508 6.40378 6.47908 6.56839 6.63466 6.66228 6.76943 6.89277 6.90941 6.98070 7.09228 7.35966 7.64129 7.83030 7.98244 8.36245 8.62735 9.03857 9.64980 11.12174 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.028268 B = 0.009263 C = 0.008075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.289457 B = 3022.023760 C = 3466.776551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C 0.100 3.900 4 H 0.058 0.942 5 O -0.382 6.382 6 C 0.022 3.978 7 C 0.064 3.936 8 H 0.063 0.937 9 C -0.150 4.150 10 C -0.142 4.142 11 C 0.225 3.775 12 C -0.124 4.124 13 C -0.546 4.546 14 H 0.055 0.945 15 C 0.083 3.917 16 N -0.854 5.854 17 Si 0.882 3.118 18 H -0.280 1.280 19 H -0.287 1.287 20 H -0.275 1.275 21 O -0.341 6.341 22 H 0.049 0.951 23 H 0.047 0.953 24 H 0.053 0.947 25 H 0.065 0.935 26 H 0.092 0.908 27 H 0.035 0.965 28 H 0.050 0.950 29 H 0.077 0.923 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.015 0.985 35 H 0.075 0.925 36 H 0.041 0.959 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.553 6.616 -3.465 9.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.153 4.153 3 C 0.042 3.958 4 H 0.076 0.924 5 O -0.301 6.301 6 C -0.075 4.075 7 C 0.005 3.995 8 H 0.080 0.920 9 C -0.188 4.188 10 C -0.180 4.180 11 C 0.188 3.812 12 C -0.181 4.181 13 C -0.584 4.584 14 H 0.073 0.927 15 C -0.123 4.123 16 N -0.489 5.489 17 Si 0.710 3.290 18 H -0.206 1.206 19 H -0.213 1.213 20 H -0.200 1.200 21 O -0.260 6.260 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.111 0.889 27 H 0.054 0.946 28 H 0.069 0.931 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.034 0.966 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -6.774 6.211 -3.382 9.793 hybrid contribution 1.011 -0.321 -0.220 1.083 sum -5.763 5.890 -3.601 8.993 Atomic orbital electron populations 1.21728 0.96450 1.00975 1.01223 1.21563 0.94978 0.94883 1.03873 1.22118 0.93817 0.94068 0.85754 0.92363 1.87860 1.89053 1.19932 1.33214 1.22938 1.00116 0.82832 1.01587 1.23170 0.92907 0.91930 0.91499 0.91952 1.23211 0.97936 0.98110 0.99550 1.23088 0.96297 0.99497 0.99140 1.19639 0.81689 0.88222 0.91686 1.21702 0.97969 1.00683 0.97786 1.21412 1.14789 0.95297 1.26897 0.92666 1.24973 0.94864 0.97920 0.94542 1.70065 1.29500 1.16345 1.33013 0.86797 0.82723 0.80465 0.79049 1.20606 1.21264 1.20032 1.89041 1.33227 1.70389 1.33353 0.93149 0.93413 0.92790 0.91659 0.88928 0.94636 0.93112 0.90411 0.92012 0.92388 0.91814 0.93012 0.96574 0.90647 0.93969 0.93267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.81 37.16 0.36 -1.80 16 2 C -0.12 -2.09 5.59 -26.72 -0.15 -2.24 16 3 C 0.10 1.84 2.10 -26.72 -0.06 1.78 16 4 H 0.06 1.05 7.79 -51.93 -0.40 0.64 16 5 O -0.38 -6.47 9.83 -35.23 -0.35 -6.81 16 6 C 0.02 0.29 10.56 101.05 1.07 1.36 16 7 C 0.06 1.38 3.00 -25.67 -0.08 1.30 16 8 H 0.06 1.48 8.14 -51.93 -0.42 1.05 16 9 C -0.15 -2.85 4.74 -24.72 -0.12 -2.96 16 10 C -0.14 -3.01 6.26 -25.20 -0.16 -3.17 16 11 C 0.23 5.64 0.75 -91.20 -0.07 5.57 16 12 C -0.12 -2.98 8.44 37.16 0.31 -2.67 16 13 C -0.55 -15.02 8.15 -34.44 -0.28 -15.30 16 14 H 0.06 1.51 7.35 -52.48 -0.39 1.13 16 15 C 0.08 2.30 5.24 -17.82 -0.09 2.20 16 16 N -0.85 -24.43 11.26 55.43 0.62 -23.80 16 17 Si 0.88 21.29 29.54 -169.99 -5.02 16.27 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 O -0.34 -8.65 9.14 -35.23 -0.32 -8.97 16 22 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.77 7.82 -51.93 -0.41 0.36 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.09 1.89 7.70 -51.93 -0.40 1.49 16 27 H 0.04 0.43 8.09 -51.92 -0.42 0.01 16 28 H 0.05 0.67 4.82 -51.93 -0.25 0.42 16 29 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.06 1.06 7.63 -51.93 -0.40 0.67 16 31 H 0.06 1.01 7.16 -51.93 -0.37 0.63 16 32 H 0.06 1.35 7.40 -51.93 -0.38 0.97 16 33 H 0.05 1.00 7.70 -51.93 -0.40 0.60 16 34 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 1.99 6.78 -51.93 -0.35 1.64 16 36 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 291.25 15.07 4.39 4.39 Total: -1.00 -29.15 291.25 -6.20 -35.35 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -6.26 Total: -0.49 kcal Atomic # 6 Polarization: -16.67 SS G_CDS: 0.74 Total: -15.93 kcal Atomic # 7 Polarization: -24.43 SS G_CDS: 0.62 Total: -23.80 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -0.67 Total: -15.79 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.15 -6.20 -35.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386444474.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.768 kcal (2) G-P(sol) polarization free energy of solvation -29.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds