Wall clock time and date at job start Mon Mar 30 2020 03:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53007 * 109.46804 * 2 1 4 4 H 1.09001 * 109.47144 * 55.00555 * 3 2 1 5 5 O 1.42891 * 109.47316 * 294.99983 * 3 2 1 6 6 C 1.42899 * 114.00276 * 150.00299 * 5 3 2 7 7 C 1.53005 * 109.46693 * 174.99985 * 3 2 1 8 8 H 1.09006 * 110.55173 * 59.30227 * 7 3 2 9 9 C 1.54995 * 110.61638 * 182.17770 * 7 3 2 10 10 C 1.54814 * 102.09154 * 155.52640 * 9 7 3 11 11 C 1.54097 * 104.18584 * 339.11909 * 10 9 7 12 12 C 1.52999 * 109.88023 * 238.54316 * 11 10 9 13 13 C 1.50701 * 109.87894 * 117.39362 * 11 10 9 14 14 H 1.08009 * 119.99678 * 4.66796 * 13 11 10 15 15 C 1.37878 * 120.00299 * 184.66398 * 13 11 10 16 16 N 1.31507 * 119.99677 * 6.46817 * 15 13 11 17 17 Si 1.86803 * 120.00063 * 186.46793 * 15 13 11 18 18 H 1.48500 * 109.47075 * 85.19988 * 17 15 13 19 19 H 1.48493 * 109.47050 * 205.20103 * 17 15 13 20 20 H 1.48500 * 109.47160 * 325.20232 * 17 15 13 21 21 O 1.43883 * 107.37820 * 358.10451 * 11 10 9 22 22 H 1.08993 * 109.46963 * 179.97438 * 1 2 3 23 23 H 1.08997 * 109.46921 * 299.99781 * 1 2 3 24 24 H 1.08996 * 109.47268 * 59.99825 * 1 2 3 25 25 H 1.08997 * 109.46921 * 240.00219 * 2 1 3 26 26 H 1.08996 * 109.47268 * 120.00175 * 2 1 3 27 27 H 1.09008 * 109.46653 * 300.00208 * 6 5 3 28 28 H 1.09002 * 109.47332 * 59.99717 * 6 5 3 29 29 H 1.09001 * 109.47789 * 180.02562 * 6 5 3 30 30 H 1.09000 * 110.91130 * 273.72503 * 9 7 3 31 31 H 1.09004 * 110.90496 * 37.32864 * 9 7 3 32 32 H 1.08996 * 110.48602 * 97.80024 * 10 9 7 33 33 H 1.08994 * 110.48357 * 220.44514 * 10 9 7 34 34 H 1.09000 * 109.46970 * 54.40928 * 12 11 10 35 35 H 1.09001 * 109.47108 * 174.40176 * 12 11 10 36 36 H 1.08997 * 109.47228 * 294.40518 * 12 11 10 37 37 H 0.97005 * 119.99617 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8419 5 8 1.6620 2.0815 -1.2210 6 6 1.4559 3.4903 -1.1002 7 6 3.5649 1.4444 0.1257 8 1 4.0177 0.8985 -0.7020 9 6 4.1060 2.8957 0.1834 10 6 5.4538 2.7101 0.9221 11 6 5.2988 1.3654 1.6586 12 6 5.4852 1.5718 3.1631 13 6 6.3154 0.3791 1.1441 14 1 7.0563 0.6935 0.4237 15 6 6.2999 -0.9245 1.5928 16 7 5.3242 -1.3406 2.3701 17 14 7.6648 -2.0994 1.0967 18 1 8.8117 -1.9471 2.0276 19 1 7.1618 -3.4953 1.1552 20 1 8.1059 -1.7897 -0.2870 21 8 3.9714 0.8791 1.3905 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8900 26 1 1.8934 -0.5138 0.8899 27 1 0.6618 3.6808 -0.3782 28 1 2.3768 3.9645 -0.7609 29 1 1.1714 3.9004 -2.0693 30 1 4.2636 3.2923 -0.8196 31 1 3.4352 3.5385 0.7535 32 1 6.2764 2.6618 0.2086 33 1 5.6127 3.5193 1.6348 34 1 4.8000 2.3446 3.5115 35 1 5.2766 0.6386 3.6864 36 1 6.5116 1.8791 3.3633 37 1 5.3130 -2.2579 2.6855 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000386444474.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:59 Heat of formation + Delta-G solvation = -119.917095 kcal Electronic energy + Delta-G solvation = -17304.679860 eV Core-core repulsion = 14660.191995 eV Total energy + Delta-G solvation = -2644.487864 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.58380 -38.67680 -34.96263 -34.23111 -32.63132 -31.76203 -28.71859 -27.31007 -27.03079 -24.65002 -22.36397 -21.77279 -21.17142 -18.46334 -17.89980 -16.87877 -16.69056 -16.10744 -15.86970 -15.30545 -14.86767 -14.51609 -14.32120 -14.24116 -13.55955 -13.31838 -13.17415 -12.94803 -12.82454 -12.72173 -12.47780 -12.27469 -12.09993 -11.98179 -11.97438 -11.58828 -11.48973 -11.08069 -10.96913 -10.59028 -10.35835 -9.76672 -8.00483 -6.21772 1.39138 1.40421 1.48603 2.43447 2.78468 3.20017 3.58641 3.76066 4.03834 4.13072 4.26401 4.32071 4.48381 4.53278 4.59180 4.61308 4.73836 4.80578 4.88601 4.92616 4.94708 5.03790 5.06124 5.11224 5.20699 5.20773 5.23416 5.35687 5.47433 5.52455 5.71292 6.01064 6.28520 6.34979 6.68795 7.03770 7.52483 9.00667 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.028268 B = 0.009263 C = 0.008075 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.289457 B = 3022.023760 C = 3466.776551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.116 4.116 3 C 0.112 3.888 4 H 0.067 0.933 5 O -0.392 6.392 6 C 0.012 3.988 7 C 0.056 3.944 8 H 0.028 0.972 9 C -0.136 4.136 10 C -0.140 4.140 11 C 0.208 3.792 12 C -0.117 4.117 13 C -0.563 4.563 14 H 0.047 0.953 15 C 0.036 3.964 16 N -0.880 5.880 17 Si 0.940 3.060 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.274 1.274 21 O -0.366 6.366 22 H 0.060 0.940 23 H 0.056 0.944 24 H 0.063 0.937 25 H 0.051 0.949 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.052 0.948 29 H 0.102 0.898 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.037 0.963 35 H 0.044 0.956 36 H 0.048 0.952 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.254 8.092 -4.055 11.599 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.154 4.154 3 C 0.054 3.946 4 H 0.085 0.915 5 O -0.311 6.311 6 C -0.084 4.084 7 C -0.003 4.003 8 H 0.046 0.954 9 C -0.174 4.174 10 C -0.178 4.178 11 C 0.170 3.830 12 C -0.175 4.175 13 C -0.601 4.601 14 H 0.065 0.935 15 C -0.167 4.167 16 N -0.517 5.517 17 Si 0.766 3.234 18 H -0.197 1.197 19 H -0.212 1.212 20 H -0.199 1.199 21 O -0.286 6.286 22 H 0.080 0.920 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.121 0.879 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.471 7.702 -3.980 11.445 hybrid contribution 1.223 -0.740 -0.079 1.431 sum -6.248 6.963 -4.059 10.198 Atomic orbital electron populations 1.21645 0.93491 1.02085 1.02116 1.21495 0.97555 0.94688 1.01639 1.21876 0.91527 0.94402 0.86786 0.91479 1.87853 1.88820 1.22160 1.32255 1.23217 1.00810 0.80646 1.03686 1.23311 0.95062 0.92975 0.88950 0.95373 1.23159 0.96778 0.96663 1.00751 1.23007 0.97387 0.98041 0.99338 1.19795 0.81191 0.89596 0.92418 1.21603 0.98877 0.99769 0.97204 1.21771 1.15369 0.96320 1.26657 0.93465 1.25652 0.96793 0.99490 0.94737 1.70194 1.30931 1.16469 1.34065 0.85885 0.80363 0.78439 0.78755 1.19725 1.21155 1.19881 1.88996 1.33153 1.71509 1.34941 0.92045 0.92442 0.91809 0.92970 0.92137 0.93067 0.92962 0.87940 0.90067 0.90074 0.92489 0.90870 0.94403 0.93720 0.93320 0.93493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.80 9.81 71.98 0.71 -3.09 16 2 C -0.12 -4.22 5.59 30.60 0.17 -4.05 16 3 C 0.11 4.01 2.10 30.60 0.06 4.07 16 4 H 0.07 2.28 7.79 -2.39 -0.02 2.26 16 5 O -0.39 -12.43 9.83 -148.98 -1.46 -13.90 16 6 C 0.01 0.28 10.56 113.37 1.20 1.48 16 7 C 0.06 2.40 3.00 31.28 0.09 2.49 16 8 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 9 C -0.14 -4.86 4.74 31.90 0.15 -4.71 16 10 C -0.14 -5.72 6.26 31.58 0.20 -5.52 16 11 C 0.21 10.41 0.75 -11.17 -0.01 10.40 16 12 C -0.12 -5.60 8.44 71.98 0.61 -5.00 16 13 C -0.56 -31.44 8.15 25.60 0.21 -31.23 16 14 H 0.05 2.63 7.35 -2.91 -0.02 2.61 16 15 C 0.04 2.05 5.24 84.66 0.44 2.49 16 16 N -0.88 -51.65 11.26 21.45 0.24 -51.41 16 17 Si 0.94 44.36 29.54 68.60 2.03 46.39 16 18 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 20 H -0.27 -12.74 7.11 99.48 0.71 -12.03 16 21 O -0.37 -18.84 9.14 -148.98 -1.36 -20.21 16 22 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 23 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 24 H 0.06 1.66 7.82 -2.39 -0.02 1.64 16 25 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.06 2.57 7.70 -2.39 -0.02 2.55 16 27 H 0.05 1.03 8.09 -2.38 -0.02 1.01 16 28 H 0.05 1.19 4.82 -2.39 -0.01 1.18 16 29 H 0.10 1.86 8.14 -2.39 -0.02 1.85 16 30 H 0.08 2.58 7.63 -2.39 -0.02 2.56 16 31 H 0.08 2.53 7.16 -2.38 -0.02 2.52 16 32 H 0.06 2.36 7.40 -2.39 -0.02 2.35 16 33 H 0.07 2.64 7.70 -2.39 -0.02 2.62 16 34 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.04 2.39 6.78 -2.39 -0.02 2.37 16 36 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.26 14.40 8.31 -92.70 -0.77 13.63 16 Total: -1.00 -63.22 291.25 4.29 -58.93 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 1.02 Total: 12.87 kcal Atomic # 6 Polarization: -36.50 SS G_CDS: 3.83 Total: -32.67 kcal Atomic # 7 Polarization: -51.65 SS G_CDS: 0.24 Total: -51.41 kcal Atomic # 8 Polarization: -31.28 SS G_CDS: -2.83 Total: -34.10 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.39 kcal Total: -63.22 4.29 -58.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000386444474.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.986 kcal (2) G-P(sol) polarization free energy of solvation -63.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds