Wall clock time and date at job start Mon Mar 30 2020 03:12:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47087 * 2 1 4 4 C 1.53002 * 109.47087 * 179.97438 * 3 2 1 5 5 C 1.53005 * 110.35389 * 307.14665 * 4 3 2 6 6 C 1.54947 * 110.31059 * 185.00119 * 4 3 2 7 7 C 1.55307 * 100.94091 * 204.63808 * 6 4 3 8 8 H 1.09004 * 110.84466 * 152.52381 * 7 6 4 9 9 O 1.42900 * 110.85033 * 275.94028 * 7 6 4 10 10 C 1.54382 * 102.25087 * 34.13633 * 7 6 4 11 11 H 1.09001 * 109.83043 * 98.15720 * 10 7 6 12 12 C 1.53002 * 109.82670 * 219.12521 * 10 7 6 13 13 C 1.50704 * 109.46950 * 184.99858 * 12 10 7 14 14 H 1.07996 * 120.00145 * 0.02562 * 13 12 10 15 15 C 1.37879 * 119.99950 * 180.02562 * 13 12 10 16 16 N 1.31505 * 120.00011 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99891 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47092 * 89.99917 * 17 15 13 19 19 H 1.48502 * 109.47113 * 209.99953 * 17 15 13 20 20 H 1.48502 * 109.47442 * 330.00274 * 17 15 13 21 21 O 1.43237 * 107.59016 * 338.63715 * 10 7 6 22 22 H 1.09000 * 109.47058 * 179.97438 * 1 2 3 23 23 H 1.09006 * 109.46926 * 299.99811 * 1 2 3 24 24 H 1.09005 * 109.46865 * 59.99678 * 1 2 3 25 25 H 1.09006 * 109.46926 * 240.00189 * 2 1 3 26 26 H 1.09002 * 109.47007 * 119.99804 * 2 1 3 27 27 H 1.09006 * 109.47083 * 60.00285 * 3 2 1 28 28 H 1.08995 * 109.47662 * 299.99945 * 3 2 1 29 29 H 1.09002 * 109.46878 * 297.85335 * 5 4 3 30 30 H 1.08996 * 109.47283 * 57.85311 * 5 4 3 31 31 H 1.08999 * 109.47209 * 177.86011 * 5 4 3 32 32 H 1.09003 * 111.12327 * 86.71898 * 6 4 3 33 33 H 1.08996 * 111.12316 * 322.55989 * 6 4 3 34 34 H 0.96696 * 114.00054 * 298.55463 * 9 7 6 35 35 H 1.08995 * 109.47462 * 304.99952 * 12 10 7 36 36 H 1.09003 * 109.46811 * 65.00183 * 12 10 7 37 37 H 0.97002 * 120.00161 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.1017 0.5764 1.1444 6 6 4.1078 2.8901 0.1273 7 6 5.5102 2.7416 -0.5232 8 1 5.8386 3.6861 -0.9569 9 8 6.4636 2.2623 0.4274 10 6 5.2519 1.6879 -1.6215 11 1 5.1036 2.1829 -2.5813 12 6 6.4399 0.7277 -1.7092 13 6 6.2355 -0.2203 -2.8628 14 1 5.3474 -0.1451 -3.4727 15 6 7.1823 -1.1836 -3.1396 16 7 7.0043 -2.0104 -4.1465 17 14 8.7188 -1.3132 -2.0851 18 1 8.4658 -2.2412 -0.9537 19 1 9.8417 -1.8303 -2.9078 20 1 9.0703 0.0288 -1.5553 21 8 4.0692 0.9658 -1.2591 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8901 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9563 0.8901 28 1 1.6767 1.9564 -0.8899 29 1 3.7775 0.9943 2.0975 30 1 3.7155 -0.4377 1.0422 31 1 5.1909 0.5558 1.1086 32 1 4.1891 3.1889 1.1725 33 1 3.4873 3.5900 -0.4322 34 1 6.5947 2.8504 1.1836 35 1 7.3564 1.2967 -1.8645 36 1 6.5173 0.1600 -0.7818 37 1 7.6705 -2.6879 -4.3415 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388792130.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:12:58 Heat of formation + Delta-G solvation = -113.730893 kcal Electronic energy + Delta-G solvation = -17082.643180 eV Core-core repulsion = 14438.423569 eV Total energy + Delta-G solvation = -2644.219610 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.83644 -36.04125 -34.71851 -32.84153 -31.38003 -30.38263 -28.67578 -26.53825 -24.98618 -22.20521 -21.06865 -20.37731 -19.01203 -17.25556 -16.53034 -15.70772 -15.37390 -14.56163 -14.33210 -13.80436 -13.42741 -13.34806 -12.98780 -12.66559 -12.35711 -11.98718 -11.90740 -11.77500 -11.41976 -11.27761 -11.18240 -11.09629 -10.72707 -10.41018 -10.33718 -10.06606 -9.92264 -9.46625 -9.43968 -9.03105 -8.58744 -8.38290 -5.88629 -3.83707 3.42311 3.48111 3.55436 4.28467 4.48422 4.59760 4.76807 4.87606 5.21469 5.24458 5.31270 5.39044 5.46761 5.51598 5.68106 5.73189 5.81172 5.86413 5.96860 5.99353 6.09478 6.16123 6.24389 6.38055 6.40589 6.50937 6.63196 6.70674 6.84844 7.30792 7.57169 7.84858 7.89560 8.07671 8.71616 9.19649 9.74415 11.25267 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.026193 B = 0.008841 C = 0.007446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.712754 B = 3166.151824 C = 3759.545891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C -0.106 4.106 4 C 0.107 3.893 5 C -0.166 4.166 6 C -0.180 4.180 7 C 0.069 3.931 8 H 0.067 0.933 9 O -0.541 6.541 10 C 0.103 3.897 11 H 0.080 0.920 12 C -0.009 4.009 13 C -0.506 4.506 14 H 0.073 0.927 15 C 0.064 3.936 16 N -0.908 5.908 17 Si 0.877 3.123 18 H -0.279 1.279 19 H -0.291 1.291 20 H -0.265 1.265 21 O -0.347 6.347 22 H 0.051 0.949 23 H 0.047 0.953 24 H 0.051 0.949 25 H 0.075 0.925 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.365 0.635 35 H 0.023 0.977 36 H 0.025 0.975 37 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.028 10.279 11.738 17.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.164 4.164 3 C -0.143 4.143 4 C 0.067 3.933 5 C -0.223 4.223 6 C -0.218 4.218 7 C 0.010 3.990 8 H 0.084 0.916 9 O -0.345 6.345 10 C 0.046 3.954 11 H 0.098 0.902 12 C -0.047 4.047 13 C -0.544 4.544 14 H 0.091 0.909 15 C -0.136 4.136 16 N -0.548 5.548 17 Si 0.705 3.295 18 H -0.205 1.205 19 H -0.217 1.217 20 H -0.189 1.189 21 O -0.266 6.266 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.070 0.930 25 H 0.093 0.907 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.096 0.904 33 H 0.098 0.902 34 H 0.211 0.789 35 H 0.041 0.959 36 H 0.044 0.956 37 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.002 9.466 11.089 16.631 hybrid contribution 0.880 0.490 1.005 1.423 sum -7.122 9.956 12.094 17.208 Atomic orbital electron populations 1.21782 0.96545 1.01278 1.01144 1.21576 0.94814 0.96864 1.03166 1.21657 0.93489 0.97610 1.01575 1.22175 0.93267 0.91332 0.86532 1.22311 1.03526 1.00259 0.96220 1.23988 0.98027 0.98190 1.01608 1.23473 0.87288 0.97511 0.90716 0.91556 1.86737 1.61914 1.50109 1.35778 1.22825 0.87307 0.91406 0.93854 0.90207 1.19682 0.92174 0.94961 0.97849 1.21146 1.06797 1.14026 1.12397 0.90913 1.24990 0.98071 0.95504 0.95059 1.69922 1.35666 1.19872 1.29376 0.86809 0.83275 0.78847 0.80553 1.20496 1.21712 1.18915 1.88609 1.41788 1.60956 1.35269 0.92988 0.93371 0.92960 0.90669 0.91869 0.91783 0.91607 0.93228 0.91876 0.90333 0.90431 0.90160 0.78926 0.95893 0.95628 0.93026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.13 -1.78 5.33 -26.73 -0.14 -1.92 16 3 C -0.11 -1.45 4.58 -26.73 -0.12 -1.57 16 4 C 0.11 1.71 0.86 -89.59 -0.08 1.64 16 5 C -0.17 -2.63 8.27 37.16 0.31 -2.33 16 6 C -0.18 -2.40 5.81 -24.48 -0.14 -2.54 16 7 C 0.07 1.10 4.18 -24.78 -0.10 1.00 16 8 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 9 O -0.54 -8.65 10.01 -35.23 -0.35 -9.00 16 10 C 0.10 2.18 3.44 -26.01 -0.09 2.09 16 11 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 12 C -0.01 -0.24 2.92 -27.88 -0.08 -0.32 16 13 C -0.51 -15.24 9.49 -34.44 -0.33 -15.57 16 14 H 0.07 2.38 7.99 -52.49 -0.42 1.96 16 15 C 0.06 1.95 5.47 -17.82 -0.10 1.85 16 16 N -0.91 -29.29 13.96 55.43 0.77 -28.51 16 17 Si 0.88 23.04 27.47 -169.99 -4.67 18.37 16 18 H -0.28 -7.26 7.11 56.52 0.40 -6.86 16 19 H -0.29 -7.50 7.11 56.52 0.40 -7.09 16 20 H -0.26 -6.73 6.54 56.52 0.37 -6.36 16 21 O -0.35 -7.38 9.96 -35.23 -0.35 -7.73 16 22 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 23 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.07 1.27 7.99 -51.93 -0.42 0.85 16 26 H 0.06 0.86 6.35 -51.93 -0.33 0.53 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.04 6.29 -51.93 -0.33 0.72 16 31 H 0.08 1.41 6.02 -51.93 -0.31 1.10 16 32 H 0.08 0.85 8.03 -51.93 -0.42 0.43 16 33 H 0.08 0.97 8.06 -51.93 -0.42 0.55 16 34 H 0.36 3.82 9.11 45.56 0.42 4.24 16 35 H 0.02 0.59 7.20 -51.93 -0.37 0.22 16 36 H 0.03 0.68 6.92 -51.93 -0.36 0.32 16 37 H 0.26 7.85 8.31 -40.82 -0.34 7.51 16 LS Contribution 289.83 15.07 4.37 4.37 Total: -1.00 -34.05 289.83 -6.24 -40.30 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -5.51 Total: 1.23 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -0.51 Total: -19.02 kcal Atomic # 7 Polarization: -29.29 SS G_CDS: 0.77 Total: -28.51 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.70 Total: -16.74 kcal Atomic # 14 Polarization: 23.04 SS G_CDS: -4.67 Total: 18.37 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -34.05 -6.24 -40.30 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388792130.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.435 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds