Wall clock time and date at job start Mon Mar 30 2020 03:35:18
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 O 1.42902 * 1
3 3 C 1.42904 * 113.99583 * 2 1
4 4 C 1.53004 * 109.47003 * 179.97438 * 3 2 1
5 5 H 1.09002 * 109.47075 * 55.00170 * 4 3 2
6 6 C 1.52994 * 109.46897 * 294.99872 * 4 3 2
7 7 C 1.53001 * 109.46929 * 174.99982 * 4 3 2
8 8 H 1.08992 * 109.48192 * 59.97672 * 7 4 3
9 9 C 1.53096 * 109.48000 * 180.02562 * 7 4 3
10 10 C 1.53178 * 109.16278 * 177.60185 * 9 7 4
11 11 C 1.53178 * 109.03511 * 303.01594 * 10 9 7
12 12 C 1.53093 * 109.16255 * 56.98447 * 11 10 9
13 13 H 1.09002 * 109.48198 * 62.37219 * 12 11 10
14 14 C 1.50700 * 109.47903 * 182.39629 * 12 11 10
15 15 H 1.07997 * 119.99922 * 359.97151 * 14 12 11
16 16 C 1.37882 * 119.99816 * 179.97438 * 14 12 11
17 17 N 1.31510 * 119.99683 * 179.97438 * 16 14 12
18 18 Si 1.86804 * 119.99958 * 0.02562 * 16 14 12
19 19 H 1.48504 * 109.46890 * 89.99738 * 18 16 14
20 20 H 1.48497 * 109.46778 * 209.99545 * 18 16 14
21 21 H 1.48499 * 109.47193 * 330.00003 * 18 16 14
22 22 O 1.42904 * 109.42351 * 302.38111 * 12 11 10
23 23 H 1.08993 * 109.47595 * 299.99933 * 1 2 3
24 24 H 1.08997 * 109.46893 * 60.00786 * 1 2 3
25 25 H 1.09004 * 109.46723 * 180.02562 * 1 2 3
26 26 H 1.09003 * 109.47671 * 59.99667 * 3 2 1
27 27 H 1.09002 * 109.46896 * 299.99394 * 3 2 1
28 28 H 1.09002 * 109.47455 * 299.99482 * 6 4 3
29 29 H 1.08996 * 109.47470 * 60.00488 * 6 4 3
30 30 H 1.09002 * 109.46834 * 180.02562 * 6 4 3
31 31 H 1.08999 * 109.52155 * 57.69394 * 9 7 4
32 32 H 1.09004 * 109.51758 * 297.50939 * 9 7 4
33 33 H 1.09002 * 109.54068 * 183.15004 * 10 9 7
34 34 H 1.08992 * 109.61712 * 62.93144 * 10 9 7
35 35 H 1.09000 * 109.52619 * 297.07706 * 11 10 9
36 36 H 1.08997 * 109.57176 * 176.91900 * 11 10 9
37 37 H 0.97003 * 119.99956 * 180.02562 * 17 16 14
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 8 1.4290 0.0000 0.0000
3 6 2.0102 1.3055 0.0000
4 6 3.5354 1.1848 0.0006
5 1 3.8515 0.5684 -0.8410
6 6 3.9951 0.5371 1.3083
7 6 4.1572 2.5771 -0.1251
8 1 3.8410 3.1938 0.7161
9 6 5.6835 2.4565 -0.1251
10 6 6.2977 3.8473 -0.3114
11 6 5.7630 4.4598 -1.6096
12 6 4.2337 4.5030 -1.5523
13 1 3.9188 5.1448 -0.7294
14 6 3.6975 5.0501 -2.8500
15 1 4.3786 5.3386 -3.6369
16 6 2.3372 5.1823 -3.0327
17 7 1.8693 5.6602 -4.1650
18 14 1.1592 4.6840 -1.6713
19 1 0.9029 5.8494 -0.7873
20 1 -0.1206 4.2243 -2.2679
21 1 1.7588 3.5822 -0.8765
22 8 3.7283 3.1822 -1.3469
23 1 -0.3634 0.5138 0.8899
24 1 -0.3633 0.5137 -0.8900
25 1 -0.3633 -1.0277 0.0005
26 1 1.6885 1.8465 0.8899
27 1 1.6886 1.8464 -0.8901
28 1 3.6792 1.1536 2.1499
29 1 3.5522 -0.4547 1.3979
30 1 5.0818 0.4515 1.3089
31 1 5.9975 1.8071 -0.9423
32 1 6.0155 2.0357 0.8240
33 1 7.3829 3.7620 -0.3684
34 1 6.0258 4.4833 0.5309
35 1 6.0786 3.8509 -2.4568
36 1 6.1520 5.4716 -1.7233
37 1 0.9123 5.7536 -4.2935
RHF calculation, no. of doubly occupied orbitals= 44
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000389202044.mol2 37
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:35:18
Heat of formation + Delta-G solvation = -108.388051 kcal
Electronic energy + Delta-G solvation = -17181.856123 eV
Core-core repulsion = 14537.868195 eV
Total energy + Delta-G solvation = -2643.987927 eV
No. of doubly occupied orbitals = 44
Molecular weight
(most abundant/longest-lived isotopes) = 228.151 amu
Computer time = 0.25 seconds
Orbital eigenvalues (eV)
-39.00782 -37.50230 -34.37959 -32.83579 -32.34661 -29.57457 -27.23050 -25.68599
-25.54941 -23.47155 -21.60420 -19.79364 -19.48430 -16.80190 -16.38906 -15.86254
-15.26483 -14.98521 -14.90520 -14.14051 -13.76650 -13.34006 -13.19564 -12.81185
-12.43397 -12.34617 -12.07691 -11.72171 -11.47991 -11.04915 -10.93360 -10.87411
-10.57619 -10.50236 -10.17782 -9.94891 -9.78065 -9.56617 -9.27877 -9.01888
-8.53812 -8.08423 -6.10618 -4.18446 3.35329 3.42108 3.58468 3.99012
4.51439 4.62960 5.13369 5.26796 5.31682 5.42315 5.45303 5.49449
5.53652 5.63824 5.67875 5.74636 5.82090 5.87108 5.92759 6.08953
6.11155 6.17968 6.29337 6.34740 6.43906 6.54505 6.60413 6.65278
6.70153 6.78840 7.22220 7.41044 7.65317 8.43783 8.57102 8.92851
9.53426 10.99574
Molecular weight = 228.15amu
Principal moments of inertia in cm(-1)
A = 0.019383 B = 0.013166 C = 0.008348
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1444.229154 B = 2126.253696 C = 3353.102350
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.033 3.967
2 O -0.396 6.396
3 C 0.060 3.940
4 C -0.079 4.079
5 H 0.083 0.917
6 C -0.141 4.141
7 C 0.088 3.912
8 H 0.042 0.958
9 C -0.142 4.142
10 C -0.123 4.123
11 C -0.134 4.134
12 C 0.186 3.814
13 H 0.011 0.989
14 C -0.515 4.515
15 H 0.078 0.922
16 C 0.083 3.917
17 N -0.892 5.892
18 Si 0.861 3.139
19 H -0.289 1.289
20 H -0.294 1.294
21 H -0.209 1.209
22 O -0.372 6.372
23 H 0.036 0.964
24 H 0.041 0.959
25 H 0.081 0.919
26 H 0.041 0.959
27 H 0.074 0.926
28 H 0.049 0.951
29 H 0.061 0.939
30 H 0.056 0.944
31 H 0.067 0.933
32 H 0.061 0.939
33 H 0.054 0.946
34 H 0.054 0.946
35 H 0.062 0.938
36 H 0.061 0.939
37 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.146 -8.618 11.132 14.240
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.064 4.064
2 O -0.315 6.315
3 C -0.016 4.016
4 C -0.097 4.097
5 H 0.101 0.899
6 C -0.199 4.199
7 C 0.030 3.970
8 H 0.060 0.940
9 C -0.180 4.180
10 C -0.160 4.160
11 C -0.172 4.172
12 C 0.130 3.870
13 H 0.028 0.972
14 C -0.551 4.551
15 H 0.096 0.904
16 C -0.121 4.121
17 N -0.530 5.530
18 Si 0.689 3.311
19 H -0.216 1.216
20 H -0.221 1.221
21 H -0.133 1.133
22 O -0.293 6.293
23 H 0.055 0.945
24 H 0.059 0.941
25 H 0.099 0.901
26 H 0.059 0.941
27 H 0.092 0.908
28 H 0.068 0.932
29 H 0.080 0.920
30 H 0.075 0.925
31 H 0.085 0.915
32 H 0.079 0.921
33 H 0.072 0.928
34 H 0.073 0.927
35 H 0.081 0.919
36 H 0.079 0.921
37 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 1.996 -8.828 10.897 14.166
hybrid contribution -0.781 0.304 0.670 1.073
sum 1.215 -8.524 11.567 14.420
Atomic orbital electron populations
1.22674 0.81727 1.02061 0.99969 1.87793 1.19129 1.29050 1.95501
1.22920 0.93732 0.83645 1.01278 1.21058 0.93195 0.96376 0.99089
0.89888 1.21799 1.00898 1.00786 0.96371 1.21788 0.92406 0.92558
0.90282 0.93981 1.22166 0.96654 0.97753 1.01445 1.21643 0.99192
0.96189 0.98990 1.22056 0.98793 1.00244 0.96082 1.20126 0.89606
0.80388 0.96865 0.97162 1.20941 0.92840 1.40869 1.00479 0.90358
1.25054 0.98611 0.92789 0.95670 1.69931 1.13863 1.44390 1.24777
0.87293 0.79578 0.80775 0.83501 1.21579 1.22079 1.13260 1.88418
1.71165 1.32631 1.37043 0.94533 0.94077 0.90065 0.94119 0.90780
0.93160 0.91991 0.92459 0.91466 0.92058 0.92767 0.92717 0.91938
0.92073 0.92593
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.43 11.01 101.05 1.11 1.54 16
2 O -0.40 -6.54 10.24 -35.23 -0.36 -6.90 16
3 C 0.06 1.05 4.54 37.16 0.17 1.22 16
4 C -0.08 -1.30 2.43 -90.62 -0.22 -1.52 16
5 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16
6 C -0.14 -1.88 8.74 37.15 0.32 -1.56 16
7 C 0.09 1.61 2.08 -26.68 -0.06 1.55 16
8 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16
9 C -0.14 -2.26 4.99 -26.59 -0.13 -2.39 16
10 C -0.12 -2.00 6.03 -26.55 -0.16 -2.16 16
11 C -0.13 -2.70 5.36 -26.59 -0.14 -2.84 16
12 C 0.19 4.41 1.99 -27.84 -0.06 4.35 16
13 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16
14 C -0.51 -14.66 9.38 -34.44 -0.32 -14.98 16
15 H 0.08 2.39 7.99 -52.49 -0.42 1.98 16
16 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16
17 N -0.89 -27.52 13.96 55.43 0.77 -26.75 16
18 Si 0.86 21.28 26.69 -169.99 -4.54 16.74 16
19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16
20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16
21 H -0.21 -4.73 2.51 56.52 0.14 -4.58 16
22 O -0.37 -8.47 6.43 -35.23 -0.23 -8.69 16
23 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16
24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16
25 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16
26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16
27 H 0.07 1.49 5.51 -51.93 -0.29 1.20 16
28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16
29 H 0.06 0.81 7.82 -51.93 -0.41 0.40 16
30 H 0.06 0.68 6.49 -51.93 -0.34 0.35 16
31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16
32 H 0.06 0.82 6.57 -51.93 -0.34 0.48 16
33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16
34 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16
35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16
36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16
37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16
LS Contribution 283.99 15.07 4.28 4.28
Total: -1.00 -30.63 283.99 -6.30 -36.93
By element:
Atomic # 1 Polarization: 5.51 SS G_CDS: -6.65 Total: -1.15 kcal
Atomic # 6 Polarization: -14.89 SS G_CDS: 0.42 Total: -14.47 kcal
Atomic # 7 Polarization: -27.52 SS G_CDS: 0.77 Total: -26.75 kcal
Atomic # 8 Polarization: -15.01 SS G_CDS: -0.59 Total: -15.59 kcal
Atomic # 14 Polarization: 21.28 SS G_CDS: -4.54 Total: 16.74 kcal
Total LS contribution 4.28 Total: 4.28 kcal
Total: -30.63 -6.30 -36.93 kcal
The number of atoms in the molecule is 37
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000389202044.mol2 37
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -71.454 kcal
(2) G-P(sol) polarization free energy of solvation -30.632 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.085 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.303 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.934 kcal
(6) G-S(sol) free energy of system = (1) + (5) -108.388 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.26 seconds