Wall clock time and date at job start Mon Mar 30 2020 03:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99583 * 2 1 4 4 C 1.53004 * 109.47003 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47075 * 55.00170 * 4 3 2 6 6 C 1.52994 * 109.46897 * 294.99872 * 4 3 2 7 7 C 1.53001 * 109.46929 * 174.99982 * 4 3 2 8 8 H 1.08992 * 109.48192 * 59.97672 * 7 4 3 9 9 C 1.53096 * 109.48000 * 180.02562 * 7 4 3 10 10 C 1.53178 * 109.16278 * 177.60185 * 9 7 4 11 11 C 1.53178 * 109.03511 * 303.01594 * 10 9 7 12 12 C 1.53093 * 109.16255 * 56.98447 * 11 10 9 13 13 H 1.09002 * 109.48198 * 62.37219 * 12 11 10 14 14 C 1.50700 * 109.47903 * 182.39629 * 12 11 10 15 15 H 1.07997 * 119.99922 * 359.97151 * 14 12 11 16 16 C 1.37882 * 119.99816 * 179.97438 * 14 12 11 17 17 N 1.31510 * 119.99683 * 179.97438 * 16 14 12 18 18 Si 1.86804 * 119.99958 * 0.02562 * 16 14 12 19 19 H 1.48504 * 109.46890 * 89.99738 * 18 16 14 20 20 H 1.48497 * 109.46778 * 209.99545 * 18 16 14 21 21 H 1.48499 * 109.47193 * 330.00003 * 18 16 14 22 22 O 1.42904 * 109.42351 * 302.38111 * 12 11 10 23 23 H 1.08993 * 109.47595 * 299.99933 * 1 2 3 24 24 H 1.08997 * 109.46893 * 60.00786 * 1 2 3 25 25 H 1.09004 * 109.46723 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47671 * 59.99667 * 3 2 1 27 27 H 1.09002 * 109.46896 * 299.99394 * 3 2 1 28 28 H 1.09002 * 109.47455 * 299.99482 * 6 4 3 29 29 H 1.08996 * 109.47470 * 60.00488 * 6 4 3 30 30 H 1.09002 * 109.46834 * 180.02562 * 6 4 3 31 31 H 1.08999 * 109.52155 * 57.69394 * 9 7 4 32 32 H 1.09004 * 109.51758 * 297.50939 * 9 7 4 33 33 H 1.09002 * 109.54068 * 183.15004 * 10 9 7 34 34 H 1.08992 * 109.61712 * 62.93144 * 10 9 7 35 35 H 1.09000 * 109.52619 * 297.07706 * 11 10 9 36 36 H 1.08997 * 109.57176 * 176.91900 * 11 10 9 37 37 H 0.97003 * 119.99956 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8515 0.5684 -0.8410 6 6 3.9951 0.5371 1.3083 7 6 4.1572 2.5771 -0.1251 8 1 3.8410 3.1938 0.7161 9 6 5.6835 2.4565 -0.1251 10 6 6.2977 3.8473 -0.3114 11 6 5.7630 4.4598 -1.6096 12 6 4.2337 4.5030 -1.5523 13 1 3.9188 5.1448 -0.7294 14 6 3.6975 5.0501 -2.8500 15 1 4.3786 5.3386 -3.6369 16 6 2.3372 5.1823 -3.0327 17 7 1.8693 5.6602 -4.1650 18 14 1.1592 4.6840 -1.6713 19 1 0.9029 5.8494 -0.7873 20 1 -0.1206 4.2243 -2.2679 21 1 1.7588 3.5822 -0.8765 22 8 3.7283 3.1822 -1.3469 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8465 0.8899 27 1 1.6886 1.8464 -0.8901 28 1 3.6792 1.1536 2.1499 29 1 3.5522 -0.4547 1.3979 30 1 5.0818 0.4515 1.3089 31 1 5.9975 1.8071 -0.9423 32 1 6.0155 2.0357 0.8240 33 1 7.3829 3.7620 -0.3684 34 1 6.0258 4.4833 0.5309 35 1 6.0786 3.8509 -2.4568 36 1 6.1520 5.4716 -1.7233 37 1 0.9123 5.7536 -4.2935 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389202044.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:18 Heat of formation + Delta-G solvation = -108.388051 kcal Electronic energy + Delta-G solvation = -17181.856123 eV Core-core repulsion = 14537.868195 eV Total energy + Delta-G solvation = -2643.987927 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.00782 -37.50230 -34.37959 -32.83579 -32.34661 -29.57457 -27.23050 -25.68599 -25.54941 -23.47155 -21.60420 -19.79364 -19.48430 -16.80190 -16.38906 -15.86254 -15.26483 -14.98521 -14.90520 -14.14051 -13.76650 -13.34006 -13.19564 -12.81185 -12.43397 -12.34617 -12.07691 -11.72171 -11.47991 -11.04915 -10.93360 -10.87411 -10.57619 -10.50236 -10.17782 -9.94891 -9.78065 -9.56617 -9.27877 -9.01888 -8.53812 -8.08423 -6.10618 -4.18446 3.35329 3.42108 3.58468 3.99012 4.51439 4.62960 5.13369 5.26796 5.31682 5.42315 5.45303 5.49449 5.53652 5.63824 5.67875 5.74636 5.82090 5.87108 5.92759 6.08953 6.11155 6.17968 6.29337 6.34740 6.43906 6.54505 6.60413 6.65278 6.70153 6.78840 7.22220 7.41044 7.65317 8.43783 8.57102 8.92851 9.53426 10.99574 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.013166 C = 0.008348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.229154 B = 2126.253696 C = 3353.102350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.396 6.396 3 C 0.060 3.940 4 C -0.079 4.079 5 H 0.083 0.917 6 C -0.141 4.141 7 C 0.088 3.912 8 H 0.042 0.958 9 C -0.142 4.142 10 C -0.123 4.123 11 C -0.134 4.134 12 C 0.186 3.814 13 H 0.011 0.989 14 C -0.515 4.515 15 H 0.078 0.922 16 C 0.083 3.917 17 N -0.892 5.892 18 Si 0.861 3.139 19 H -0.289 1.289 20 H -0.294 1.294 21 H -0.209 1.209 22 O -0.372 6.372 23 H 0.036 0.964 24 H 0.041 0.959 25 H 0.081 0.919 26 H 0.041 0.959 27 H 0.074 0.926 28 H 0.049 0.951 29 H 0.061 0.939 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.061 0.939 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.146 -8.618 11.132 14.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.315 6.315 3 C -0.016 4.016 4 C -0.097 4.097 5 H 0.101 0.899 6 C -0.199 4.199 7 C 0.030 3.970 8 H 0.060 0.940 9 C -0.180 4.180 10 C -0.160 4.160 11 C -0.172 4.172 12 C 0.130 3.870 13 H 0.028 0.972 14 C -0.551 4.551 15 H 0.096 0.904 16 C -0.121 4.121 17 N -0.530 5.530 18 Si 0.689 3.311 19 H -0.216 1.216 20 H -0.221 1.221 21 H -0.133 1.133 22 O -0.293 6.293 23 H 0.055 0.945 24 H 0.059 0.941 25 H 0.099 0.901 26 H 0.059 0.941 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.996 -8.828 10.897 14.166 hybrid contribution -0.781 0.304 0.670 1.073 sum 1.215 -8.524 11.567 14.420 Atomic orbital electron populations 1.22674 0.81727 1.02061 0.99969 1.87793 1.19129 1.29050 1.95501 1.22920 0.93732 0.83645 1.01278 1.21058 0.93195 0.96376 0.99089 0.89888 1.21799 1.00898 1.00786 0.96371 1.21788 0.92406 0.92558 0.90282 0.93981 1.22166 0.96654 0.97753 1.01445 1.21643 0.99192 0.96189 0.98990 1.22056 0.98793 1.00244 0.96082 1.20126 0.89606 0.80388 0.96865 0.97162 1.20941 0.92840 1.40869 1.00479 0.90358 1.25054 0.98611 0.92789 0.95670 1.69931 1.13863 1.44390 1.24777 0.87293 0.79578 0.80775 0.83501 1.21579 1.22079 1.13260 1.88418 1.71165 1.32631 1.37043 0.94533 0.94077 0.90065 0.94119 0.90780 0.93160 0.91991 0.92459 0.91466 0.92058 0.92767 0.92717 0.91938 0.92073 0.92593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.54 16 2 O -0.40 -6.54 10.24 -35.23 -0.36 -6.90 16 3 C 0.06 1.05 4.54 37.16 0.17 1.22 16 4 C -0.08 -1.30 2.43 -90.62 -0.22 -1.52 16 5 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 6 C -0.14 -1.88 8.74 37.15 0.32 -1.56 16 7 C 0.09 1.61 2.08 -26.68 -0.06 1.55 16 8 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 9 C -0.14 -2.26 4.99 -26.59 -0.13 -2.39 16 10 C -0.12 -2.00 6.03 -26.55 -0.16 -2.16 16 11 C -0.13 -2.70 5.36 -26.59 -0.14 -2.84 16 12 C 0.19 4.41 1.99 -27.84 -0.06 4.35 16 13 H 0.01 0.26 7.57 -51.93 -0.39 -0.14 16 14 C -0.51 -14.66 9.38 -34.44 -0.32 -14.98 16 15 H 0.08 2.39 7.99 -52.49 -0.42 1.98 16 16 C 0.08 2.42 5.47 -17.82 -0.10 2.32 16 17 N -0.89 -27.52 13.96 55.43 0.77 -26.75 16 18 Si 0.86 21.28 26.69 -169.99 -4.54 16.74 16 19 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 20 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 21 H -0.21 -4.73 2.51 56.52 0.14 -4.58 16 22 O -0.37 -8.47 6.43 -35.23 -0.23 -8.69 16 23 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 24 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.49 5.51 -51.93 -0.29 1.20 16 28 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.81 7.82 -51.93 -0.41 0.40 16 30 H 0.06 0.68 6.49 -51.93 -0.34 0.35 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.06 0.82 6.57 -51.93 -0.34 0.48 16 33 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 283.99 15.07 4.28 4.28 Total: -1.00 -30.63 283.99 -6.30 -36.93 By element: Atomic # 1 Polarization: 5.51 SS G_CDS: -6.65 Total: -1.15 kcal Atomic # 6 Polarization: -14.89 SS G_CDS: 0.42 Total: -14.47 kcal Atomic # 7 Polarization: -27.52 SS G_CDS: 0.77 Total: -26.75 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: -0.59 Total: -15.59 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.54 Total: 16.74 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -30.63 -6.30 -36.93 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389202044.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.454 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds