Wall clock time and date at job start Mon Mar 30 2020 03:35:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42904 * 113.99583 * 2 1 4 4 C 1.53004 * 109.47003 * 179.97438 * 3 2 1 5 5 H 1.09002 * 109.47075 * 55.00170 * 4 3 2 6 6 C 1.52994 * 109.46897 * 294.99872 * 4 3 2 7 7 C 1.53001 * 109.46929 * 174.99982 * 4 3 2 8 8 H 1.08992 * 109.48192 * 59.97672 * 7 4 3 9 9 C 1.53096 * 109.48000 * 180.02562 * 7 4 3 10 10 C 1.53178 * 109.16278 * 177.60185 * 9 7 4 11 11 C 1.53178 * 109.03511 * 303.01594 * 10 9 7 12 12 C 1.53093 * 109.16255 * 56.98447 * 11 10 9 13 13 H 1.09002 * 109.48198 * 62.37219 * 12 11 10 14 14 C 1.50700 * 109.47903 * 182.39629 * 12 11 10 15 15 H 1.07997 * 119.99922 * 359.97151 * 14 12 11 16 16 C 1.37882 * 119.99816 * 179.97438 * 14 12 11 17 17 N 1.31510 * 119.99683 * 179.97438 * 16 14 12 18 18 Si 1.86804 * 119.99958 * 0.02562 * 16 14 12 19 19 H 1.48504 * 109.46890 * 89.99738 * 18 16 14 20 20 H 1.48497 * 109.46778 * 209.99545 * 18 16 14 21 21 H 1.48499 * 109.47193 * 330.00003 * 18 16 14 22 22 O 1.42904 * 109.42351 * 302.38111 * 12 11 10 23 23 H 1.08993 * 109.47595 * 299.99933 * 1 2 3 24 24 H 1.08997 * 109.46893 * 60.00786 * 1 2 3 25 25 H 1.09004 * 109.46723 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47671 * 59.99667 * 3 2 1 27 27 H 1.09002 * 109.46896 * 299.99394 * 3 2 1 28 28 H 1.09002 * 109.47455 * 299.99482 * 6 4 3 29 29 H 1.08996 * 109.47470 * 60.00488 * 6 4 3 30 30 H 1.09002 * 109.46834 * 180.02562 * 6 4 3 31 31 H 1.08999 * 109.52155 * 57.69394 * 9 7 4 32 32 H 1.09004 * 109.51758 * 297.50939 * 9 7 4 33 33 H 1.09002 * 109.54068 * 183.15004 * 10 9 7 34 34 H 1.08992 * 109.61712 * 62.93144 * 10 9 7 35 35 H 1.09000 * 109.52619 * 297.07706 * 11 10 9 36 36 H 1.08997 * 109.57176 * 176.91900 * 11 10 9 37 37 H 0.97003 * 119.99956 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 1 3.8515 0.5684 -0.8410 6 6 3.9951 0.5371 1.3083 7 6 4.1572 2.5771 -0.1251 8 1 3.8410 3.1938 0.7161 9 6 5.6835 2.4565 -0.1251 10 6 6.2977 3.8473 -0.3114 11 6 5.7630 4.4598 -1.6096 12 6 4.2337 4.5030 -1.5523 13 1 3.9188 5.1448 -0.7294 14 6 3.6975 5.0501 -2.8500 15 1 4.3786 5.3386 -3.6369 16 6 2.3372 5.1823 -3.0327 17 7 1.8693 5.6602 -4.1650 18 14 1.1592 4.6840 -1.6713 19 1 0.9029 5.8494 -0.7873 20 1 -0.1206 4.2243 -2.2679 21 1 1.7588 3.5822 -0.8765 22 8 3.7283 3.1822 -1.3469 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.6885 1.8465 0.8899 27 1 1.6886 1.8464 -0.8901 28 1 3.6792 1.1536 2.1499 29 1 3.5522 -0.4547 1.3979 30 1 5.0818 0.4515 1.3089 31 1 5.9975 1.8071 -0.9423 32 1 6.0155 2.0357 0.8240 33 1 7.3829 3.7620 -0.3684 34 1 6.0258 4.4833 0.5309 35 1 6.0786 3.8509 -2.4568 36 1 6.1520 5.4716 -1.7233 37 1 0.9123 5.7536 -4.2935 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389202044.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:35:18 Heat of formation + Delta-G solvation = -128.652714 kcal Electronic energy + Delta-G solvation = -17182.734865 eV Core-core repulsion = 14537.868195 eV Total energy + Delta-G solvation = -2644.866669 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 228.151 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.50823 -38.80995 -35.85826 -34.45822 -34.29116 -31.22512 -28.44012 -27.39453 -26.72838 -24.95021 -23.29544 -21.13228 -21.02879 -18.94390 -17.77072 -17.29141 -16.67343 -16.54623 -16.17483 -15.91988 -15.26860 -14.77504 -14.64465 -14.37731 -14.10287 -13.63490 -13.32312 -13.18446 -12.93562 -12.62146 -12.40750 -12.15323 -12.10488 -12.01354 -11.70717 -11.63431 -11.34141 -11.19923 -10.89587 -10.71588 -10.49025 -9.76814 -8.35474 -6.48483 1.35407 1.37783 1.63424 2.41883 2.78151 2.86420 3.44512 3.89151 4.03360 4.11780 4.15510 4.24507 4.38487 4.39882 4.45804 4.49701 4.54221 4.58722 4.70204 4.78734 4.85976 4.92441 4.95188 5.07341 5.09598 5.19170 5.20388 5.27365 5.36541 5.44096 5.58523 5.61904 6.20274 6.23550 6.56190 6.93111 7.28997 8.78153 Molecular weight = 228.15amu Principal moments of inertia in cm(-1) A = 0.019383 B = 0.013166 C = 0.008348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.229154 B = 2126.253696 C = 3353.102350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.060 3.940 4 C -0.077 4.077 5 H 0.068 0.932 6 C -0.132 4.132 7 C 0.078 3.922 8 H 0.051 0.949 9 C -0.138 4.138 10 C -0.115 4.115 11 C -0.133 4.133 12 C 0.191 3.809 13 H 0.013 0.987 14 C -0.528 4.528 15 H 0.037 0.963 16 C 0.024 3.976 17 N -0.943 5.943 18 Si 0.921 3.079 19 H -0.283 1.283 20 H -0.299 1.299 21 H -0.178 1.178 22 O -0.396 6.396 23 H 0.051 0.949 24 H 0.031 0.969 25 H 0.107 0.893 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.061 0.939 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.059 0.941 37 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.733 -10.272 14.469 17.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.326 6.326 3 C -0.016 4.016 4 C -0.096 4.096 5 H 0.087 0.913 6 C -0.189 4.189 7 C 0.020 3.980 8 H 0.069 0.931 9 C -0.175 4.175 10 C -0.153 4.153 11 C -0.171 4.171 12 C 0.135 3.865 13 H 0.031 0.969 14 C -0.565 4.565 15 H 0.055 0.945 16 C -0.175 4.175 17 N -0.582 5.582 18 Si 0.745 3.255 19 H -0.210 1.210 20 H -0.227 1.227 21 H -0.100 1.100 22 O -0.317 6.317 23 H 0.070 0.930 24 H 0.050 0.950 25 H 0.125 0.875 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.079 0.921 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.078 0.922 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.607 -10.494 14.247 17.886 hybrid contribution -0.937 0.794 -0.432 1.302 sum 1.670 -9.700 13.816 16.963 Atomic orbital electron populations 1.22918 0.80139 1.03938 1.00247 1.87776 1.20909 1.28375 1.95519 1.22831 0.94531 0.84073 1.00186 1.21072 0.92607 0.95314 1.00603 0.91329 1.21737 1.02037 1.00655 0.94477 1.22143 0.94416 0.93131 0.88269 0.93071 1.22156 0.94589 0.97521 1.03248 1.21617 1.00753 0.96276 0.96634 1.21981 0.96418 1.00471 0.98227 1.19855 0.91694 0.80885 0.94091 0.96904 1.21274 0.92497 1.41101 1.01590 0.94488 1.26001 1.00636 0.92804 0.98098 1.70078 1.14267 1.46659 1.27233 0.86404 0.76816 0.81446 0.80797 1.20977 1.22653 1.09975 1.88287 1.71842 1.31757 1.39772 0.93002 0.95027 0.87516 0.92882 0.94050 0.91978 0.91741 0.90638 0.92062 0.88292 0.90003 0.91388 0.93553 0.92227 0.92563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 11.01 113.37 1.25 1.82 16 2 O -0.41 -12.48 10.24 -148.98 -1.53 -14.01 16 3 C 0.06 1.95 4.54 71.98 0.33 2.28 16 4 C -0.08 -2.34 2.43 -10.79 -0.03 -2.36 16 5 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 6 C -0.13 -2.94 8.74 71.98 0.63 -2.31 16 7 C 0.08 2.61 2.08 30.63 0.06 2.67 16 8 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 9 C -0.14 -3.82 4.99 30.69 0.15 -3.67 16 10 C -0.12 -3.35 6.03 30.71 0.19 -3.17 16 11 C -0.13 -5.26 5.36 30.68 0.16 -5.09 16 12 C 0.19 9.00 1.99 29.88 0.06 9.06 16 13 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 14 C -0.53 -31.20 9.38 25.60 0.24 -30.96 16 15 H 0.04 2.41 7.99 -2.91 -0.02 2.38 16 16 C 0.02 1.42 5.47 84.66 0.46 1.88 16 17 N -0.94 -60.71 13.96 21.45 0.30 -60.42 16 18 Si 0.92 44.68 26.69 68.60 1.83 46.51 16 19 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 20 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 21 H -0.18 -7.69 2.51 99.48 0.25 -7.44 16 22 O -0.40 -17.58 6.43 -148.98 -0.96 -18.54 16 23 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 24 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 25 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.04 1.61 5.51 -2.39 -0.01 1.60 16 28 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.06 1.43 7.82 -2.39 -0.02 1.41 16 30 H 0.07 1.41 6.49 -2.39 -0.02 1.39 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.10 2.06 6.57 -2.39 -0.02 2.04 16 33 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.27 16.04 8.31 -92.71 -0.77 15.27 16 Total: -1.00 -69.12 283.99 3.71 -65.41 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 0.56 Total: 10.87 kcal Atomic # 6 Polarization: -33.34 SS G_CDS: 3.51 Total: -29.83 kcal Atomic # 7 Polarization: -60.71 SS G_CDS: 0.30 Total: -60.42 kcal Atomic # 8 Polarization: -30.06 SS G_CDS: -2.48 Total: -32.55 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 1.83 Total: 46.51 kcal Total: -69.12 3.71 -65.41 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389202044.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.240 kcal (2) G-P(sol) polarization free energy of solvation -69.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds